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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2n3y:A (-1.00) BS01 MH0 ? GO:0005515 ... P99999 28348229
    2 3wah:A (1.54) BS01 MH0 ? GO:0046872 ... G3XD33 24604808
    3 3wah:A (1.54) BS02 MH0 ? GO:0046872 ... G3XD33 24604808
    4 3wah:B (1.54) BS01 MH0 ? GO:0046872 ... G3XD33 24604808
    5 4js9:A (2.784) BS01 MH0 1.14.13.39 GO:0004517 ... P29477 N/A
    6 4js9:B (2.784) BS01 MH0 1.14.13.39 GO:0004517 ... P29477 N/A
    7 4l7y:A (1.8) BS01 MH0 ? GO:0004601 ... P69905 N/A
    8 4l7y:B (1.8) BS01 MH0 ? GO:0004601 ... P68871 N/A
    9 4l7y:C (1.8) BS01 MH0 ? GO:0004601 ... P69905 N/A
    10 4l7y:D (1.8) BS02 MH0 ? GO:0004601 ... P68871 N/A
    11 6vd3:A (1.67) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    12 6vd3:B (1.67) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    13 6vd4:A (1.954) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    14 6vd4:B (1.954) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    15 6vd5:A (1.64) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    16 6vd5:B (1.64) BS02 MH0 ? GO:0004601 ... Q9NAV7 N/A
    17 6vd6:A (1.563) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    18 6vd6:B (1.563) BS01 MH0 ? GO:0004601 ... Q9NAV7 N/A
    19 7y3u:A (2.5) BS01 MH0 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    20 7y3u:B (2.5) BS01 MH0 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    21 8u4z:A (2.39) BS01 MH0 N/A GO:0004601 ... N/A 38519509
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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