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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 78 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ipc:A (2.0) BS01 MGP ? GO:0000082 ... P06730 11879179 BindingDB: Ki=28nM
    2 1l8b:A (1.8) BS01 MGP ? GO:0003723 ... P63073 12054859 MOAD: Kd=0.14uM
    BindingDB: Kd=10nM
    3 1l8b:B (1.8) BS01 MGP ? GO:0003723 ... P63073 12054859 MOAD: Kd=0.14uM
    BindingDB: Kd=10nM
    4 2wmc:A (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    5 2wmc:B (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    6 2wmc:C (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    7 2wmc:D (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    8 2wmc:E (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    9 2wmc:F (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    10 2wmc:G (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    11 2wmc:H (2.2) BS01 MGP ? GO:0003723 ... Q0GRC4 21283665
    12 3am7:A (2.2) BS02 MGP ? GO:0003723 ... P06730 21661078 BindingDB: Ki=28nM
    13 3ctr:A (2.1) BS01 MGP 3.1.13.4 GO:0003676 ... O95453 18694759 MOAD: Kd=6.94uM
    PDBbind: -logKd/Ki=5.16, Kd=6.94uM
    14 3gdh:A (2.0) BS01 MGP 2.1.1.- GO:0001510 ... Q96RS0 19386620
    15 3gdh:B (2.0) BS01 MGP 2.1.1.- GO:0001510 ... Q96RS0 19386620
    16 3gdh:C (2.0) BS01 MGP 2.1.1.- GO:0001510 ... Q96RS0 19386620
    17 3qji:A (1.75) BS01 MGP 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    18 4emr:A (1.75) BS01 MGP 3.2.2.22 GO:0000166 ... D9J2T9 23280611 PDBbind: -logKd/Ki=7.49, Kd=32.1nM
    19 4tpw:A (1.5) BS01 MGP ? GO:0003723 ... P06730 25049413 BindingDB: Ki=28nM
    20 4tpw:B (1.5) BS01 MGP ? GO:0003723 ... P06730 25049413 BindingDB: Ki=28nM
    21 5abx:A (1.66) BS01 MGP ? GO:0003723 ... O61955 26294658
    22 5bxv:A (2.1) BS01 MGP ? GO:0003723 ... P63073 26170285 BindingDB: Kd=10nM
    23 5bxv:C (2.1) BS01 MGP ? GO:0003723 ... P63073 26170285 BindingDB: Kd=10nM
    24 5t46:A (1.53) BS01 MGP ? GO:0000082 ... P06730 27773676 BindingDB: Ki=28nM
    25 5t46:C (1.53) BS01 MGP ? GO:0000082 ... P06730 27773676 BindingDB: Ki=28nM
    26 5t48:A (2.19) BS01 MGP ? GO:0003723 ... P48598 27773676
    27 5tfb:A (1.87) BS02 MGP 5.6.1.6 GO:0005524 ... P13569 N/A
    28 5zjy:A (1.59) BS02 MGP ? GO:0003723 ... P06730 30881679 BindingDB: Ki=28nM
    29 5zk9:A (1.76) BS02 MGP ? GO:0003723 ... P06730 30881679 BindingDB: Ki=28nM
    30 6evk:C (2.9) BS02 MGP ? GO:0003723 ... H6QM90 29202182
    31 6fbz:A (1.496) BS01 MGP ? GO:0003723 ... G0SCU4 30053226
    32 6fc1:A (1.35) BS01 MGP ? GO:0003723 ... P07260 30053226
    33 6fc1:C (1.35) BS01 MGP ? GO:0003723 ... P07260 30053226
    34 6gkj:A (2.068) BS01 MGP ? GO:0003723 ... P63073 N/A BindingDB: Kd=10nM
    35 6gkj:B (2.068) BS01 MGP ? GO:0003723 ... P63073 N/A BindingDB: Kd=10nM
    36 6gkj:C (2.068) BS01 MGP ? GO:0003723 ... P63073 N/A BindingDB: Kd=10nM
    37 6gkj:D (2.068) BS01 MGP ? GO:0003723 ... P63073 N/A BindingDB: Kd=10nM
    38 6o80:A (2.1) BS01 MGP ? GO:0000340 ... A0A2V2VRR6 31066441 MOAD: Kd=21uM
    39 6scx:A (2.92) BS01 MGP 3.6.1.-
    3.6.1.22    		 GO:0016787 ... Q9BQG2 31875550
    40 6scx:A (2.92) BS02 MGP 3.6.1.-
    3.6.1.22    		 GO:0016787 ... Q9BQG2 31875550
    41 6scx:B (2.92) BS01 MGP 3.6.1.-
    3.6.1.22    		 GO:0016787 ... Q9BQG2 31875550
    42 6scx:B (2.92) BS02 MGP 3.6.1.-
    3.6.1.22    		 GO:0016787 ... Q9BQG2 31875550
    43 6scx:C (2.92) BS01 MGP 3.6.1.-
    3.6.1.22    		 GO:0016787 ... Q9BQG2 31875550
    44 6wrz:A (2.25) BS03 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 32994211
    45 6wvn:A (2.0) BS03 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 32994211
    46 6xya:B (1.35) BS01 MGP 2.7.7.48
    3.1.-.-    		 N/A I0DF35 32313945 MOAD: Kd=138uM
    47 7fgg:A (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    48 7fgg:B (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    49 7fgg:C (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    50 7fgg:D (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    51 7fgg:E (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    52 7fgg:F (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    53 7fgg:G (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    54 7fgg:H (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    55 7fgg:I (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    56 7fgg:J (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    57 7fgg:K (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    58 7fgg:L (2.19) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    59 7jhe:A (2.25) BS03 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 33972410
    60 7jib:A (2.65) BS05 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 33972410
    61 7meu:A (1.91) BS01 MGP ? GO:0003723 ... P06730 33892272 BindingDB: Ki=28nM
    62 7meu:B (1.91) BS01 MGP ? GO:0003723 ... P06730 33892272 BindingDB: Ki=28nM
    63 7v1h:A (2.0) BS01 MGP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... C4TPE0 35758665
    64 7v1i:A (2.06) BS02 MGP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... C4TPE0 35758665
    65 8aow:A (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    66 8aow:C (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    67 8aow:E (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    68 8aow:G (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    69 8aow:I (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    70 8aow:K (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    71 8aow:M (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    72 8aow:O (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    73 8aow:Q (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    74 8aow:S (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    75 8aow:V (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    76 8aow:X (2.7) BS03 MGP 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    77 9emj:A (1.79) BS03 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    78 9eun:A (2.33) BS02 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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