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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ow3:B (1.8) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 11927263
    2 2is6:A (2.2) BS03 MGF 5.6.2.4 GO:0000717 ... P03018 17190599
    3 2is6:B (2.2) BS03 MGF 5.6.2.4 GO:0000717 ... P03018 17190599
    4 2wf5:A (1.3) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 20164409
    5 2wzb:A (1.47) BS02 MGF 2.7.2.3 GO:0004618 ... P00558 20397725
    6 3jbz:A (28.0) BS02 MGF 2.7.11.1 GO:0004674 ... P42345 27097373
    7 3msx:A (1.65) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 N/A
    8 3qhr:A (2.17) BS04 MGF 2.7.11.22 GO:0000082 ... P24941 21565702
    9 3qhr:C (2.17) BS04 MGF 2.7.11.22 GO:0000082 ... P24941 21565702
    10 3qhw:A (1.91) BS04 MGF 2.7.11.22 GO:0000082 ... P24941 21565702
    11 3qhw:C (1.91) BS04 MGF 2.7.11.22 GO:0000082 ... P24941 21565702
    12 3t9e:A (1.9) BS06 MGF 2.7.4.24 GO:0000829 ... O43314 22119861
    13 3zoz:A (1.95) BS01 MGF 2.7.2.3 GO:0004618 ... P00558 N/A
    14 4bev:A (3.583) BS02 MGF 7.2.2.8 GO:0000166 ... Q5ZWR1 N/A
    15 4bew:A (2.5) BS04 MGF 7.2.2.10 GO:0000166 ... P04191 N/A
    16 4bew:B (2.5) BS04 MGF 7.2.2.10 GO:0000166 ... P04191 N/A
    17 4c4r:A (1.1) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 25104750
    18 4c4s:A (1.5) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 25104750
    19 4dlc:A (1.759) BS02 MGF 3.6.1.23 GO:0004170 ... Q57ZH3 24001052
    20 4jsv:A (3.5) BS02 MGF 2.7.11.1 GO:0004674 ... P42345 23636326
    21 4jsv:B (3.5) BS03 MGF 2.7.11.1 GO:0004674 ... P42345 23636326
    22 4nv0:A (1.65) BS03 MGF 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    23 4nv0:B (1.65) BS03 MGF 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    24 5hpy:B (2.4) BS01 MGF 3.6.5.2 GO:0000902 ... P61586 27363609
    25 5hpy:F (2.4) BS01 MGF 3.6.5.2 GO:0000902 ... P61586 27363609
    26 5irc:D (1.72) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 27481945
    27 5irc:F (1.72) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 27481945
    28 5m6x:B (2.4) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 28498638
    29 5m6x:I (2.4) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 28498638
    30 5mpm:A (3.3) BS01 MGF 7.2.2.10 GO:0000045 ... P11607 30777856
    31 5olx:A (1.38) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    32 5olx:A (1.38) BS04 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    33 5olx:A (1.38) BS05 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    34 5oly:A (2.0) BS01 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    35 5oly:G (2.0) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 29619190
    36 6h8x:A (1.83) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    37 6h8x:B (1.83) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    38 6h8z:A (1.6) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    39 6hdl:A (1.16) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    40 6hdm:A (1.3) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    41 6ydj:A (1.04) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 33139716
    42 7qsc:B (1.91) BS02 MGF 3.6.5.2 GO:0000902 ... P61586 N/A
    43 7qsc:D (1.91) BS02 MGF 3.6.5.2 GO:0000902 ... P61586 N/A
    44 7qtm:B (2.25) BS02 MGF 3.6.5.2 GO:0000902 ... P61586 N/A
    45 7qtm:I (2.25) BS02 MGF 3.6.5.2 GO:0000902 ... P61586 N/A
    46 7rxv:A (1.07) BS02 MGF 2.5.1.6 GO:0004478 ... P31153 34668717
    47 8bos:R (2.1) BS02 MGF 3.6.5.2 GO:0003924 ... P01112 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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