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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1px4:C (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1602 1px4:C (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1603 1px4:D (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1604 1px4:D (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1605 1pyd:A (2.4) BS01 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 8512926
    1606 1pyd:B (2.4) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 8512926
    1607 1pyx:A (2.4) BS01 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625
    1608 1pyx:B (2.4) BS01 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14529625
    1609 1q0n:A (1.25) BS01 MG 2.7.6.3 GO:0000287 ... P26281 11080626
    1610 1q0n:A (1.25) BS02 MG 2.7.6.3 GO:0000287 ... P26281 11080626
    1611 1q3b:A (2.05) BS02 MG 3.2.2.-
    4.2.99.18    		 GO:0000703 ... P50465 16145054
    1612 1q3c:A (2.3) BS02 MG 3.2.2.-
    4.2.99.18    		 GO:0000703 ... P50465 16145054
    1613 1q3h:A (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1614 1q3h:B (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1615 1q3h:C (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1616 1q3h:D (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1617 1q3q:C (2.3) BS01 MG 3.6.4.9 GO:0005524 ... P61112 14729342
    1618 1q3q:D (2.3) BS01 MG 3.6.4.9 GO:0005524 ... P61112 14729342
    1619 1q3v:A (2.91) BS03 MG ? GO:0003677 ... P06956 12954782
    1620 1q4r:A (1.9) BS01 MG ? GO:0005829 ... Q9LUV2 15326607
    1621 1q54:A (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    1622 1q54:B (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    1623 1q6l:A (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1624 1q6l:B (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1625 1q6o:A (1.202) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1626 1q6o:B (1.202) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1627 1q6q:A (1.695) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1628 1q6q:B (1.695) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1629 1q6r:A (1.76) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1630 1q6r:B (1.76) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    1631 1q6z:A (1.0) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    1632 1q7y:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12185246
    1633 1q7y:C (3.2) BS02 MG ? GO:0002181 ... P20276 12185246
    1634 1q7y:U (3.2) BS02 MG ? GO:0002181 ... P10972 12185246
    1635 1q7y:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12185246
    1636 1q81:4 (2.95) BS02 MG ? GO:0000049 ... P32411 12185246
    1637 1q81:C (2.95) BS02 MG ? GO:0002181 ... P20276 12185246
    1638 1q81:U (2.95) BS02 MG ? GO:0002181 ... P10972 12185246
    1639 1q81:Z (2.95) BS02 MG ? GO:0000166 ... P12736 12185246
    1640 1q82:4 (2.98) BS02 MG ? GO:0000049 ... P32411 12185246
    1641 1q82:C (2.98) BS02 MG ? GO:0002181 ... P20276 12185246
    1642 1q82:U (2.98) BS02 MG ? GO:0002181 ... P10972 12185246
    1643 1q82:Z (2.98) BS02 MG ? GO:0000166 ... P12736 12185246
    1644 1q86:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12185246
    1645 1q86:C (3.0) BS02 MG ? GO:0002181 ... P20276 12185246
    1646 1q86:U (3.0) BS02 MG ? GO:0002181 ... P10972 12185246
    1647 1q86:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12185246
    1648 1q8y:A (2.05) BS01 MG 2.7.11.1 GO:0004672 ... Q03656 12911299
    1649 1q91:A (1.6) BS02 MG 3.1.3.- GO:0008253 ... Q9NPB1 15044615
    1650 1q92:A (1.4) BS01 MG 3.1.3.- GO:0008253 ... Q9NPB1 15044615
    1651 1q9d:A (2.35) BS02 MG 3.1.3.11 GO:0005737 ... P00636 14530289
    1652 1q9d:A (2.35) BS03 MG 3.1.3.11 GO:0005737 ... P00636 14530289
    1653 1q9d:B (2.35) BS03 MG 3.1.3.11 GO:0005737 ... P00636 14530289
    1654 1q9d:B (2.35) BS04 MG 3.1.3.11 GO:0005737 ... P00636 14530289
    1655 1q9k:A (1.96) BS01 MG N/A N/A N/A 14625588
    1656 1q9l:A (2.28) BS01 MG N/A N/A N/A 14625588
    1657 1q9l:C (2.28) BS02 MG N/A N/A N/A 14625588
    1658 1q9l:C (2.28) BS03 MG N/A N/A N/A 14625588
    1659 1q9l:C (2.28) BS04 MG N/A N/A N/A 14625588
    1660 1q9l:C (2.28) BS05 MG N/A N/A N/A 14625588
    1661 1q9o:A (1.79) BS01 MG ? GO:0005576 ... P01837 14625588
    1662 1q9o:A (1.79) BS02 MG ? GO:0005576 ... P01837 14625588
    1663 1q9o:B (1.79) BS01 MG ? N/A I6L985 14625588
    1664 1q9o:C (1.79) BS01 MG ? GO:0005576 ... P01837 14625588
    1665 1q9o:C (1.79) BS02 MG ? GO:0005576 ... P01837 14625588
    1666 1q9o:D (1.79) BS01 MG ? N/A I6L985 14625588
    1667 1q9s:A (2.42) BS01 MG 2.7.1.26 GO:0005515 ... Q969G6 14580199
    1668 1q9w:A (1.75) BS01 MG ? GO:0046872 ... Q52L64 14625588
    1669 1q9w:A (1.75) BS02 MG ? GO:0046872 ... Q52L64 14625588
    1670 1q9w:C (1.75) BS01 MG ? GO:0046872 ... Q52L64 14625588
    1671 1qb7:A (1.5) BS01 MG 2.4.2.7 GO:0000166 ... Q27679 10393170
    1672 1qb8:A (2.0) BS01 MG 2.4.2.7 GO:0000166 ... Q27679 10393170
    1673 1qbk:C (3.0) BS01 MG 3.6.5.- GO:0000054 ... P62826 10353245
    1674 1qc5:A (2.0) BS01 MG ? N/A P56199 10455165
    1675 1qc5:B (2.0) BS01 MG ? N/A P56199 10455165
    1676 1qcy:A (2.3) BS01 MG ? N/A P56199 14660600
    1677 1qez:A (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1678 1qez:B (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1679 1qez:C (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1680 1qez:D (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1681 1qez:E (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1682 1qez:F (2.7) BS01 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1683 1qez:F (2.7) BS02 MG 3.6.1.1 GO:0000287 ... P50308 10386872
    1684 1qf4:A (2.2) BS02 MG 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    1685 1qf5:A (2.0) BS02 MG 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    1686 1qgu:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1687 1qgu:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1688 1qgu:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1689 1qgu:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1690 1qgx:A (1.6) BS01 MG 3.1.3.7 GO:0000103 ... P32179 10656801
    1691 1qh1:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1692 1qh1:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1693 1qh1:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1694 1qh1:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1695 1qh8:B (1.6) BS02 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1696 1qh8:B (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1697 1qh8:D (1.6) BS01 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1698 1qh8:D (1.6) BS03 MG 1.18.6.1 GO:0005524 ... P09772 10525412
    1699 1qha:A (2.25) BS05 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    1700 1qha:A (2.25) BS06 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    1701 1qha:B (2.25) BS05 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    1702 1qha:B (2.25) BS06 MG 2.7.1.1 GO:0001678 ... P19367 10574795
    1703 1qhy:A (2.6) BS01 MG 2.7.1.- GO:0005524 ... Q56148 10835366
    1704 1qlg:A (2.2) BS04 MG 3.1.3.8 GO:0005576 ... O66037 10655618
    1705 1qlg:A (2.2) BS05 MG 3.1.3.8 GO:0005576 ... O66037 10655618
    1706 1qmz:A (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    1707 1qmz:C (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    1708 1qpb:A (2.4) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 10651824
    1709 1qpb:B (2.4) BS03 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 10651824
    1710 1qqc:A (2.6) BS01 MG 2.7.7.7 GO:0000166 ... Q7SIG7 10545321
    1711 1qr0:A (1.9) BS01 MG 2.7.8.7 GO:0000287 ... P39135 10581256
    1712 1qra:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P01112 10574788
    1713 1qs0:A (2.4) BS01 MG 1.2.4.4 GO:0003863 ... P09060 10426958
    1714 1qs4:A (2.1) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 10557269
    1715 1qs4:B (2.1) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 10557269
    1716 1qs4:C (2.1) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 10557269
    1717 1qss:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    1718 1qss:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    1719 1qsy:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    1720 1qsy:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    1721 1qtm:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    1722 1qtm:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    1723 1qvf:2 (3.1) BS03 MG ? GO:0000049 ... P32411 14561884
    1724 1qvf:A (3.1) BS02 MG ? GO:0002181 ... P20276 14561884
    1725 1qvf:S (3.1) BS02 MG ? GO:0002181 ... P10972 14561884
    1726 1qvf:X (3.1) BS02 MG ? GO:0000166 ... P12736 14561884
    1727 1qvg:2 (2.9) BS03 MG ? GO:0000049 ... P32411 14561884
    1728 1qvg:S (2.9) BS02 MG ? GO:0002181 ... P10972 14561884
    1729 1qvg:X (2.9) BS02 MG ? GO:0000166 ... P12736 14561884
    1730 1qvi:A (2.54) BS01 MG ? GO:0003774 ... P24733 14656445
    1731 1qvi:Y (2.54) BS01 MG ? GO:0005509 ... P13543 14656445
    1732 1r03:A (1.7) BS01 MG 1.16.3.1 GO:0006826 ... Q8N4E7 15201052
    1733 1r0a:A (2.8) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 15016861
    1734 1r0x:A (2.2) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1735 1r0x:B (2.2) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1736 1r0x:C (2.2) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1737 1r0x:D (2.2) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1738 1r0z:A (2.35) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1739 1r0z:B (2.35) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1740 1r0z:C (2.35) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1741 1r0z:D (2.35) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1742 1r10:A (3.0) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1743 1r10:B (3.0) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    1744 1r2q:A (1.05) BS01 MG 3.6.5.2 GO:0003924 ... P20339 14684892
    1745 1r2r:B (1.5) BS01 MG 4.2.3.3
    5.3.1.1    		 GO:0004807 ... P00939 14643664
    1746 1r3c:A (2.0) BS01 MG 2.7.11.24 GO:0000077 ... Q16539 14726206
    1747 1r3u:A (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    1748 1r3u:B (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    1749 1r4a:A (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    1750 1r4a:B (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    1751 1r4a:C (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    1752 1r4a:D (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    1753 1r5u:A (4.5) BS02 MG 2.7.7.6 GO:0000428 ... P04050 14963322
    1754 1r67:A (1.77) BS01 MG 5.3.3.2 GO:0000287 ... Q46822 16617181
    1755 1r6b:X (2.25) BS01 MG ? GO:0004176 ... P0ABH9 15037248
    1756 1r6w:A (1.62) BS01 MG 4.2.1.113 GO:0000287 ... P29208 14661953
    1757 1r89:A (1.8) BS03 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    1758 1r8b:A (2.0) BS02 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    1759 1r8b:A (2.0) BS03 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    1760 1r9s:A (4.25) BS04 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    1761 1r9t:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    1762 1r9t:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    1763 1rbl:A (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1764 1rbl:B (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1765 1rbl:C (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1766 1rbl:D (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1767 1rbl:E (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1768 1rbl:F (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1769 1rbl:G (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1770 1rbl:H (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00880 15299492
    1771 1rc5:A (2.3) BS01 MG 3.1.26.3 GO:0004525 ... O67082 15016361
    1772 1rc5:B (2.3) BS01 MG 3.1.26.3 GO:0004525 ... O67082 15016361
    1773 1rc5:C (2.3) BS01 MG 3.1.26.3 GO:0004525 ... O67082 15016361
    1774 1rc5:D (2.3) BS01 MG 3.1.26.3 GO:0004525 ... O67082 15016361
    1775 1rdd:A (2.8) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 8108376
    1776 1rdf:A (2.8) BS01 MG 3.11.1.1 GO:0000287 ... O31156 15005616
    1777 1rdf:B (2.8) BS01 MG 3.11.1.1 GO:0000287 ... O31156 15005616
    1778 1rdf:C (2.8) BS01 MG 3.11.1.1 GO:0000287 ... O31156 15005616
    1779 1rdf:D (2.8) BS01 MG 3.11.1.1 GO:0000287 ... O31156 15005616
    1780 1rdf:E (2.8) BS01 MG 3.11.1.1 GO:0000287 ... O31156 15005616
    1781 1rdf:F (2.8) BS01 MG 3.11.1.1 GO:0000287 ... O31156 15005616
    1782 1rdq:E (1.26) BS02 MG 2.7.11.11 GO:0000122 ... P05132 14757059
    1783 1rep:C (2.6) BS03 MG ? GO:0003677 ... P03856 10469640
    1784 1rfq:B (3.0) BS01 MG 3.6.4.- GO:0000287 ... P68135 15099571
    1785 1rk2:A (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    1786 1rk2:B (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    1787 1rk2:C (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    1788 1rk2:D (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    1789 1rkq:A (1.4) BS01 MG 3.1.3.23 GO:0000287 ... P0A8Y5 N/A
    1790 1rkq:B (1.4) BS01 MG 3.1.3.23 GO:0000287 ... P0A8Y5 N/A
    1791 1rku:A (1.47) BS01 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    1792 1rku:B (1.47) BS01 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    1793 1rkv:A (1.9) BS02 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    1794 1rkv:B (1.9) BS02 MG 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    1795 1rlm:A (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    1796 1rlm:B (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    1797 1rlm:C (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    1798 1rlm:D (1.9) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    1799 1rlo:A (2.0) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    1800 1rlo:B (2.0) BS01 MG 3.1.3.23 GO:0000287 ... P75792 15657928
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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