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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 1nuw:A (1.3) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1402 1nuw:A (1.3) BS04 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1403 1nuw:A (1.3) BS05 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1404 1nuw:A (1.3) BS06 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1405 1nux:A (1.6) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1406 1nux:A (1.6) BS04 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1407 1nux:A (1.6) BS05 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1408 1nuy:A (1.3) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1409 1nuy:A (1.3) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1410 1nuy:A (1.3) BS04 MG 3.1.3.11 GO:0005737 ... P00636 12595528
    1411 1nuz:A (1.9) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1412 1nuz:A (1.9) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1413 1nuz:A (1.9) BS04 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1414 1nv0:A (1.8) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1415 1nv0:A (1.8) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1416 1nv0:A (1.8) BS04 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1417 1nv1:A (1.9) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1418 1nv1:A (1.9) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1419 1nv2:A (2.1) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1420 1nv2:A (2.1) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1421 1nv3:A (2.0) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1422 1nv4:A (1.9) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1423 1nv4:A (1.9) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1424 1nv5:A (1.9) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1425 1nv5:A (1.9) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1426 1nv6:A (2.15) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1427 1nv6:A (2.15) BS03 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1428 1nv7:A (2.15) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1429 1nv7:B (2.15) BS02 MG 3.1.3.11 GO:0005737 ... P00636 12595529
    1430 1nvu:Q (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    1431 1nvv:Q (2.18) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    1432 1nvw:Q (2.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    1433 1nvx:Q (3.2) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    1434 1nzi:A (1.5) BS02 MG 3.4.21.42 GO:0005509 ... P09871 12788922
    1435 1nzi:B (1.5) BS02 MG 3.4.21.42 GO:0005509 ... P09871 12788922
    1436 1o03:A (1.4) BS02 MG 5.4.2.6 GO:0000287 ... P71447 12637673
    1437 1o08:A (1.2) BS02 MG 5.4.2.6 GO:0000287 ... P71447 12637673
    1438 1o1h:A (1.4) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    1439 1o1h:B (1.4) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    1440 1o1t:B (2.1) BS01 MG 2.5.1.58 GO:0003824 ... Q02293 12667062
    1441 1o3y:A (1.5) BS01 MG 3.6.5.2 GO:0000139 ... P84078 12679809
    1442 1o3y:B (1.5) BS01 MG 3.6.5.2 GO:0000139 ... P84078 12679809
    1443 1o6t:A (1.6) BS01 MG ? N/A P0DJM0 12526809
    1444 1o6y:A (2.2) BS02 MG 2.7.11.1 GO:0004672 ... P9WI81 12551895
    1445 1o90:A (3.1) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    1446 1o92:A (3.19) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    1447 1o92:A (3.19) BS04 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    1448 1o93:A (3.49) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    1449 1o9t:A (2.9) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    1450 1oad:A (1.5) BS02 MG 5.3.1.5 GO:0000287 ... P24300 12777803
    1451 1oad:B (1.5) BS02 MG 5.3.1.5 GO:0000287 ... P24300 12777803
    1452 1ob2:A (3.35) BS06 MG 3.6.1.48 GO:0003723 ... P0CE48 N/A
    1453 1ob5:A (3.1) BS04 MG 3.6.1.48 GO:0003746 ... Q01698 16257965
    1454 1ob5:C (3.1) BS04 MG 3.6.1.48 GO:0003746 ... Q01698 16257965
    1455 1ob5:E (3.1) BS04 MG 3.6.1.48 GO:0003746 ... Q01698 16257965
    1456 1obd:A (1.4) BS02 MG 6.3.2.6 GO:0004639 ... P27616 N/A
    1457 1obg:A (2.05) BS03 MG 6.3.2.6 GO:0004639 ... P27616 N/A
    1458 1obw:A (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    1459 1obw:B (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    1460 1obw:C (1.9) BS01 MG 3.6.1.1 GO:0000287 ... P0A7A9 9201917
    1461 1occ:A (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 8638158
    1462 1occ:N (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 8638158
    1463 1oco:A (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    1464 1oco:N (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    1465 1ocr:A (2.35) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    1466 1ocr:N (2.35) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    1467 1ocz:A (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    1468 1ocz:N (2.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 9624044
    1469 1od5:A (2.1) BS02 MG ? GO:0045735 ... P04347 12771376
    1470 1od5:B (2.1) BS01 MG ? GO:0045735 ... P04347 12771376
    1471 1oe0:A (2.4) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    1472 1oe0:B (2.4) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    1473 1oe0:C (2.4) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    1474 1oe0:D (2.4) BS02 MG 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    1475 1oeu:A (2.5) BS01 MG 3.1.3.48 GO:0004725 ... P18031 12802339
    1476 1ofh:G (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1477 1ofh:H (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1478 1ofh:I (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1479 1ofh:L (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1480 1ofh:M (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1481 1ofh:N (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1482 1ofi:G (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1483 1ofi:H (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1484 1ofi:I (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1485 1ofi:L (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1486 1ofi:M (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1487 1ofi:N (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    1488 1ohf:A (2.8) BS01 MG ? N/A Q4TVT6 14972547
    1489 1ohf:B (2.8) BS01 MG ? N/A Q4TVT6 14972547
    1490 1ohf:C (2.8) BS01 MG ? N/A Q4TVT6 14972547
    1491 1ohf:D (2.8) BS01 MG ? N/A Q4TVT6 14972547
    1492 1ohh:F (2.8) BS02 MG 7.1.2.2 GO:0005515 ... P00829 12923572
    1493 1oi9:B (2.1) BS01 MG ? GO:0016538 ... P20248 15239650
    1494 1oiu:B (2.0) BS01 MG ? GO:0016538 ... P20248 15239650
    1495 1oiw:A (2.05) BS02 MG 3.6.5.2 GO:0003924 ... P62491 14699104
    1496 1oix:A (1.7) BS03 MG 3.6.5.2 GO:0003924 ... P62491 15837192
    1497 1oiy:B (2.4) BS01 MG ? GO:0016538 ... P20248 15239650
    1498 1ol5:A (2.5) BS03 MG 2.7.11.1 GO:0000212 ... O14965 14580337
    1499 1ol7:A (2.75) BS02 MG 2.7.11.1 GO:0000212 ... O14965 14580337
    1500 1olu:A (1.9) BS01 MG 1.2.4.4 GO:0003863 ... P12694 12902323
    1501 1one:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    1502 1one:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    1503 1ou8:A (1.6) BS02 MG ? N/A P45206 14536076
    1504 1ou8:B (1.6) BS02 MG ? N/A P45206 14536076
    1505 1ouo:A (2.3) BS01 MG 3.1.-.- GO:0004518 ... Q7MHK3 12881435
    1506 1ovd:A (2.25) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    1507 1ovd:B (2.25) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    1508 1ovm:A (2.65) BS01 MG 4.1.1.74 GO:0000287 ... P23234 12752451
    1509 1ovm:B (2.65) BS02 MG 4.1.1.74 GO:0000287 ... P23234 12752451
    1510 1ovm:C (2.65) BS01 MG 4.1.1.74 GO:0000287 ... P23234 12752451
    1511 1ovm:D (2.65) BS02 MG 4.1.1.74 GO:0000287 ... P23234 12752451
    1512 1ow2:A (2.0) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 14696183
    1513 1ow2:B (2.0) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 14696183
    1514 1ow3:B (1.8) BS01 MG 3.6.5.2 GO:0000902 ... P61586 11927263
    1515 1ox0:A (1.3) BS01 MG 2.3.1.179 GO:0004315 ... Q9FBC2 12837788
    1516 1oxh:A (2.09) BS01 MG 2.3.1.179 GO:0004315 ... Q9FBC2 12837788
    1517 1oxh:B (2.09) BS01 MG 2.3.1.179 GO:0004315 ... Q9FBC2 12837788
    1518 1oxh:C (2.09) BS01 MG 2.3.1.179 GO:0004315 ... Q9FBC2 12837788
    1519 1oxh:D (2.09) BS01 MG 2.3.1.179 GO:0004315 ... Q9FBC2 12837788
    1520 1oxv:D (1.95) BS01 MG 7.5.2.- GO:0005524 ... Q97UY8 12823973
    1521 1oy0:B (2.8) BS01 MG 2.1.2.11 GO:0000287 ... P9WIL7 12842039
    1522 1oy0:C (2.8) BS01 MG 2.1.2.11 GO:0000287 ... P9WIL7 12842039
    1523 1oy0:D (2.8) BS01 MG 2.1.2.11 GO:0000287 ... P9WIL7 12842039
    1524 1oy0:E (2.8) BS01 MG 2.1.2.11 GO:0000287 ... P9WIL7 12842039
    1525 1ozf:A (2.3) BS02 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1526 1ozf:B (2.3) BS02 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1527 1ozg:A (2.3) BS02 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1528 1ozg:B (2.3) BS02 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1529 1ozh:A (2.0) BS02 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1530 1ozh:B (2.0) BS03 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1531 1ozh:C (2.0) BS02 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1532 1ozh:D (2.0) BS03 MG 2.2.1.6 GO:0000287 ... P27696 14557277
    1533 1p0s:H (2.8) BS01 MG 3.4.21.6 GO:0004252 ... P00742 12834348
    1534 1p0s:L (2.8) BS01 MG 3.4.21.6 GO:0005509 ... P00742 12834348
    1535 1p0s:L (2.8) BS02 MG 3.4.21.6 GO:0005509 ... P00742 12834348
    1536 1p0s:L (2.8) BS03 MG 3.4.21.6 GO:0005509 ... P00742 12834348
    1537 1p18:A (2.0) BS01 MG 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    1538 1p2s:A (2.45) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    1539 1p2t:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    1540 1p2u:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    1541 1p2v:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    1542 1p43:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    1543 1p43:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    1544 1p48:A (2.0) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    1545 1p48:B (2.0) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12846578
    1546 1p4d:A (2.6) BS01 MG 3.6.4.12
    5.6.2.1    		 N/A P14565 14604527
    1547 1p4d:B (2.6) BS01 MG 3.6.4.12
    5.6.2.1    		 N/A P14565 14604527
    1548 1p4d:C (2.6) BS01 MG 3.6.4.12
    5.6.2.1    		 N/A P14565 14604527
    1549 1p4n:A (1.9) BS02 MG 2.3.2.10 GO:0008360 ... Q9EY50 14962386
    1550 1p4n:A (1.9) BS03 MG 2.3.2.10 GO:0008360 ... Q9EY50 14962386
    1551 1p4n:A (1.9) BS04 MG 2.3.2.10 GO:0008360 ... Q9EY50 14962386
    1552 1p5w:A (3.3) BS02 MG ? GO:0005198 ... P17455 14581558
    1553 1p5w:A (3.3) BS03 MG ? GO:0005198 ... P17455 14581558
    1554 1p5z:B (1.6) BS01 MG 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 12808445
    1555 1p62:B (1.9) BS01 MG 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 12808445
    1556 1p7t:A (1.95) BS01 MG 2.3.3.9 GO:0000287 ... P37330 12930982
    1557 1p7t:B (1.95) BS01 MG 2.3.3.9 GO:0000287 ... P37330 12930982
    1558 1p8k:Z (2.6) BS05 MG 3.1.-.- GO:0004519 ... P03880 14633971
    1559 1p9b:A (2.0) BS01 MG 6.3.4.4 GO:0000166 ... Q9U8D3 14729341
    1560 1pfk:A (2.4) BS02 MG 2.7.1.11 GO:0000287 ... P0A796 2975709
    1561 1pfk:B (2.4) BS03 MG 2.7.1.11 GO:0000287 ... P0A796 2975709
    1562 1pg3:A (2.3) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    1563 1pg3:B (2.3) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    1564 1pg4:A (1.75) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    1565 1pg4:B (1.75) BS01 MG 6.2.1.1 GO:0003987 ... Q8ZKF6 12627952
    1566 1pi3:A (1.2) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    1567 1pkg:B (2.9) BS01 MG 2.7.10.1 GO:0004672 ... P10721 12824176
    1568 1plj:A (2.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 15299412
    1569 1plk:A (2.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 15299412
    1570 1po7:A (1.2) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    1571 1pow:A (2.5) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    1572 1pow:B (2.5) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    1573 1pox:A (2.1) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    1574 1pox:B (2.1) BS01 MG 1.2.3.3 GO:0000287 ... P37063 8145244
    1575 1ppv:A (1.7) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    1576 1ppv:B (1.7) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    1577 1ppw:A (2.21) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    1578 1ppw:B (2.21) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    1579 1ppx:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    1580 1pt6:A (1.87) BS01 MG ? N/A P56199 14660600
    1581 1pt6:B (1.87) BS01 MG ? N/A P56199 14660600
    1582 1pun:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    1583 1puq:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    1584 1pus:A (-1.00) BS01 MG 3.6.1.55 GO:0000287 ... P08337 12939141
    1585 1pvd:A (2.3) BS01 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 8604141
    1586 1pvd:B (2.3) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74    		 GO:0000287 ... P06169 8604141
    1587 1pvf:A (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 N/A
    1588 1pvf:B (1.78) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 N/A
    1589 1px3:A (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1590 1px3:A (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1591 1px3:B (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1592 1px3:B (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1593 1px3:C (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1594 1px3:C (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1595 1px3:D (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1596 1px3:D (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1597 1px4:A (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1598 1px4:A (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1599 1px4:B (1.6) BS01 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    1600 1px4:B (1.6) BS02 MG 3.2.1.23 GO:0000287 ... P00722 14621996
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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