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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14201 4rht:A (2.7633) BS03 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14202 4rht:B (2.7633) BS03 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14203 4rht:C (2.7633) BS03 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14204 4rht:D (2.7633) BS03 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14205 4rhu:A (2.573) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14206 4rhu:B (2.573) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14207 4rhu:C (2.573) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14208 4rhu:E (2.573) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14209 4rhu:F (2.573) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14210 4rhx:A (2.0322) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14211 4rhx:B (2.0322) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14212 4rhx:C (2.0322) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14213 4rhx:D (2.0322) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14214 4rhy:A (2.3196) BS01 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14215 4rhy:B (2.3196) BS01 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14216 4rhy:C (2.3196) BS01 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14217 4rhy:D (2.3196) BS01 MG 2.4.2.8 GO:0000166 ... P9WHQ9 25915781
    14218 4riw:C (3.1) BS02 MG 2.7.10.1 GO:0004672 ... P21860 25468994
    14219 4riw:D (3.1) BS02 MG 2.7.10.1 GO:0004672 ... P00533 25468994
    14220 4rix:A (3.1) BS02 MG 2.7.10.1 GO:0004672 ... P21860 25468994
    14221 4rix:C (3.1) BS02 MG 2.7.10.1 GO:0004672 ... P21860 25468994
    14222 4riy:A (2.981) BS02 MG 2.7.10.1 GO:0004672 ... P21860 25468994
    14223 4riy:C (2.981) BS02 MG 2.7.10.1 GO:0004672 ... P21860 25468994
    14224 4rji:A (3.2) BS02 MG N/A GO:0000287 ... N/A 25393087
    14225 4rji:B (3.2) BS03 MG N/A GO:0000287 ... N/A 25393087
    14226 4rji:C (3.2) BS02 MG N/A GO:0000287 ... N/A 25393087
    14227 4rji:D (3.2) BS03 MG N/A GO:0000287 ... N/A 25393087
    14228 4rjj:A (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    14229 4rjj:B (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    14230 4rjj:C (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    14231 4rjj:D (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    14232 4rjj:E (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    14233 4rjj:F (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    14234 4rjj:G (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    14235 4rjj:H (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    14236 4rjk:A (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    14237 4rjk:B (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    14238 4rjk:C (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    14239 4rjk:D (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    14240 4rjk:E (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    14241 4rjk:F (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    14242 4rjk:G (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    14243 4rjk:H (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    14244 4rjl:A (1.6401) BS01 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    14245 4rjl:A (1.6401) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    14246 4rke:A (2.0006) BS02 MG 3.6.5.2 GO:0003924 ... O18333 25615965
    14247 4rkf:A (1.5) BS02 MG ? GO:0003924 ... P25228 25615965
    14248 4rkf:B (1.5) BS02 MG ? GO:0003924 ... P25228 25615965
    14249 4rml:A (1.601) BS01 MG ? N/A Q80TS3 26235031
    14250 4rn3:A (2.15) BS01 MG ? GO:0003824 ... Q74BH2 N/A
    14251 4rn3:B (2.15) BS01 MG ? GO:0003824 ... Q74BH2 N/A
    14252 4rnh:A (2.45) BS01 MG '2.7.7.65
    3.1.4.52'    		 N/A Q9HVI8 25447517
    14253 4rnm:A (2.144) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 25666608
    14254 4rnm:A (2.144) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 25666608
    14255 4rnn:A (1.808) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 25666608
    14256 4rnn:A (1.808) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 25666608
    14257 4rnq:A (2.47) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 25897591
    14258 4rnq:A (2.47) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 25897591
    14259 4rnq:A (2.47) BS03 MG 4.2.3.61 GO:0000287 ... Q40577 25897591
    14260 4rpy:A (1.9) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14261 4rpy:A (1.9) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14262 4rpz:A (2.19) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14263 4rpz:A (2.19) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14264 4rq0:A (2.2) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14265 4rq4:A (2.1) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14266 4rq4:A (2.1) BS06 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14267 4rq5:A (2.32) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14268 4rq5:A (2.32) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14269 4rq6:A (2.25) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25825995
    14270 4rrk:A (1.86) BS02 MG 6.1.1.3 GO:0004829 ... Q9YFY3 26113036
    14271 4rsg:A (1.907) BS02 MG 3.6.5.2 N/A P01112 26515069
    14272 4rsr:A (2.25) BS02 MG ? GO:0008168 ... C0JV69 25760600
    14273 4rt2:A (1.92) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25970636
    14274 4rt3:A (1.92) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25970636
    14275 4ru9:A (2.65) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 25988947
    14276 4ru9:A (2.65) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 25988947
    14277 4rub:A (2.7) BS01 MG 4.1.1.39 GO:0000287 ... P00876 3681999
    14278 4rub:B (2.7) BS01 MG 4.1.1.39 GO:0000287 ... P00876 3681999
    14279 4rub:C (2.7) BS02 MG 4.1.1.39 GO:0000287 ... P00876 3681999
    14280 4rub:D (2.7) BS02 MG 4.1.1.39 GO:0000287 ... P00876 3681999
    14281 4rur:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 25581903
    14282 4rur:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 25581903
    14283 4rur:K (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 25581903
    14284 4rur:N (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P38624 25581903
    14285 4rur:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 25581903
    14286 4rur:W (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 25581903
    14287 4rur:Y (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 25581903
    14288 4rv5:A (1.04) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    14289 4rv5:B (1.04) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    14290 4rvy:J (5.5) BS02 MG ? GO:0009523 ... P59087 25043005
    14291 4rvy:j (5.5) BS02 MG ? GO:0009523 ... P59087 25043005
    14292 4rvz:Z (2.9) BS03 MG 6.3.4.22 GO:0002101 ... O28025 25694369
    14293 4rvz:Z (2.9) BS04 MG 6.3.4.22 GO:0002101 ... O28025 25694369
    14294 4rw3:A (1.72) BS01 MG 4.6.1.- GO:0005576 ... P0CE82 25961401
    14295 4rw5:A (1.64) BS01 MG 4.6.1.- GO:0005576 ... P0CE82 25961401
    14296 4rwg:B (2.44) BS04 MG ? GO:0004930 ... O60894
    P0AEX9
    Q16602    		 25982113
    14297 4rwn:A (2.0) BS05 MG 2.7.7.84 GO:0001730 ... Q29599 25892109
    14298 4rwn:A (2.0) BS06 MG 2.7.7.84 GO:0001730 ... Q29599 25892109
    14299 4rwo:A (2.2) BS03 MG 2.7.7.84 GO:0001730 ... Q29599 25892109
    14300 4rwo:A (2.2) BS04 MG 2.7.7.84 GO:0001730 ... Q29599 25892109
    14301 4rxc:A (2.31) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14302 4rxc:A (2.31) BS03 MG ? GO:0004161 ... Q86C09 25815158
    14303 4rxc:B (2.31) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14304 4rxc:B (2.31) BS03 MG ? GO:0004161 ... Q86C09 25815158
    14305 4rxd:A (2.0) BS01 MG ? GO:0004161 ... Q86C09 25815158
    14306 4rxd:A (2.0) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14307 4rxd:B (2.0) BS01 MG ? GO:0004161 ... Q86C09 25815158
    14308 4rxd:B (2.0) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14309 4rxd:C (2.0) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14310 4rxd:C (2.0) BS03 MG ? GO:0004161 ... Q86C09 25815158
    14311 4rxe:A (2.5) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14312 4rxe:A (2.5) BS03 MG ? GO:0004161 ... Q86C09 25815158
    14313 4rxe:B (2.5) BS02 MG ? GO:0004161 ... Q86C09 25815158
    14314 4rxe:B (2.5) BS03 MG ? GO:0004161 ... Q86C09 25815158
    14315 4rxe:B (2.5) BS04 MG ? GO:0004161 ... Q86C09 25815158
    14316 4ryt:A (2.09) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 26327371
    14317 4ryu:A (2.04) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 26327371
    14318 4ryu:B (2.04) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 26327371
    14319 4ryu:C (2.04) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 26327371
    14320 4ryu:D (2.04) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 26327371
    14321 4s04:A (3.2) BS04 MG ? GO:0000156 ... A0A0R4I965 26564787
    14322 4s04:B (3.2) BS04 MG ? GO:0000156 ... A0A0R4I965 26564787
    14323 4s04:E (3.2) BS04 MG ? GO:0000156 ... A0A0R4I965 26564787
    14324 4s04:F (3.2) BS04 MG ? GO:0000156 ... A0A0R4I965 26564787
    14325 4s05:A (3.8) BS04 MG ? GO:0000156 ... A0A0R4I965 26564787
    14326 4s05:B (3.8) BS04 MG ? GO:0000156 ... A0A0R4I965 26564787
    14327 4s0m:D (1.922) BS01 MG 2.7.4.6 GO:0004550 ... V5VIC4 N/A
    14328 4s0r:A (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14329 4s0r:A (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14330 4s0r:B (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14331 4s0r:B (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14332 4s0r:C (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14333 4s0r:C (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14334 4s0r:C (3.5) BS07 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14335 4s0r:D (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14336 4s0r:D (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14337 4s0r:D (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14338 4s0r:E (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14339 4s0r:F (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14340 4s0r:H (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14341 4s0r:H (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14342 4s0r:I (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14343 4s0r:I (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14344 4s0r:J (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14345 4s0r:J (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14346 4s0r:K (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14347 4s0r:K (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14348 4s0r:L (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14349 4s0r:M (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14350 4s0r:M (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14351 4s0r:N (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14352 4s0r:N (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    14353 4s17:A (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    14354 4s17:B (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    14355 4s17:C (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    14356 4s17:D (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    14357 4s17:E (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    14358 4s17:F (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    14359 4s1h:A (1.6) BS02 MG 2.7.1.35 GO:0000166 ... C4LVZ4 33045383
    14360 4s1h:B (1.6) BS01 MG 2.7.1.35 GO:0000166 ... C4LVZ4 33045383
    14361 4s20:D (4.7) BS04 MG N/A GO:0003677 ... N/A 25646438
    14362 4s20:I (4.7) BS05 MG N/A GO:0003677 ... N/A 25646438
    14363 4s2u:A (2.71) BS01 MG 2.7.6.1 GO:0000287 ... P0A717 N/A
    14364 4s2x:A (1.5) BS02 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    14365 4s2x:A (1.5) BS03 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    14366 4s2y:A (1.6) BS02 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    14367 4s2y:A (1.6) BS03 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    14368 4s32:A (1.34) BS02 MG 2.7.11.24 GO:0000165 ... P63086 N/A
    14369 4s33:A (1.48) BS02 MG 2.7.11.24 GO:0000165 ... P63086 N/A
    14370 4s35:A (1.55) BS03 MG 2.7.4.9 GO:0004798 ... O67099 28627020
    14371 4s35:B (1.55) BS03 MG 2.7.4.9 GO:0004798 ... O67099 28627020
    14372 4tl0:A (2.7) BS01 MG 2.7.11.1 GO:0004672 ... P53355 N/A
    14373 4tlt:A (1.7) BS01 MG ? GO:0005179 ... P02766 26459562
    14374 4tmt:A (1.58) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14375 4tmt:B (1.58) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14376 4tmv:A (1.53) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14377 4tmv:B (1.53) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14378 4tmw:A (1.55) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14379 4tmw:B (1.55) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14380 4tmx:A (1.5) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14381 4tmx:B (1.5) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14382 4tmy:A (2.8) BS01 MG ? GO:0000160 ... Q56312 9521117
    14383 4tmy:B (2.8) BS01 MG ? GO:0000160 ... Q56312 9521117
    14384 4tmz:A (2.28) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14385 4tmz:B (2.28) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14386 4tn1:A (2.75) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14387 4tn1:B (2.75) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    14388 4toq:A (1.6) BS01 MG 3.2.1.14 GO:0000272 ... G1UH28 25252615
    14389 4toq:C (1.6) BS01 MG 3.2.1.14 GO:0000272 ... G1UH28 25252615
    14390 4tq3:A (2.4076) BS02 MG ? GO:0005886 ... O28625 25051182
    14391 4tq3:A (2.4076) BS03 MG ? GO:0005886 ... O28625 25051182
    14392 4tq3:B (2.4076) BS02 MG ? GO:0005886 ... O28625 25051182
    14393 4tq3:B (2.4076) BS03 MG ? GO:0005886 ... O28625 25051182
    14394 4tq3:C (2.4076) BS02 MG ? GO:0005886 ... O28625 25051182
    14395 4tq3:C (2.4076) BS03 MG ? GO:0005886 ... O28625 25051182
    14396 4tq3:D (2.4076) BS02 MG ? GO:0005886 ... O28625 25051182
    14397 4tq3:D (2.4076) BS03 MG ? GO:0005886 ... O28625 25051182
    14398 4tq4:A (2.5025) BS01 MG ? GO:0005886 ... O28625 25051182
    14399 4tq4:A (2.5025) BS02 MG ? GO:0005886 ... O28625 25051182
    14400 4tq4:B (2.5025) BS01 MG ? GO:0005886 ... O28625 25051182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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