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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13201 4nzm:A (2.0) BS05 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13202 4nzn:A (1.75) BS03 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13203 4nzn:A (1.75) BS04 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13204 4nzn:A (1.75) BS05 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13205 4nzo:A (1.9) BS03 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13206 4nzo:A (1.9) BS04 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13207 4nzo:A (1.9) BS05 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13208 4o0m:A (2.84) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79V60 24816106
    13209 4o1p:A (2.5) BS02 MG ? GO:0004540 ... A5H025 24462203
    13210 4o1p:A (2.5) BS03 MG ? GO:0004540 ... A5H025 24462203
    13211 4o1p:B (2.5) BS03 MG ? GO:0004540 ... A5H025 24462203
    13212 4o1p:B (2.5) BS04 MG ? GO:0004540 ... A5H025 24462203
    13213 4o1p:C (2.5) BS02 MG ? GO:0004540 ... A5H025 24462203
    13214 4o1p:C (2.5) BS03 MG ? GO:0004540 ... A5H025 24462203
    13215 4o25:B (2.2) BS01 MG 3.6.5.- GO:0000139 ... Q921J2 24648513
    13216 4o2l:A (2.4) BS02 MG 3.6.5.- GO:0000139 ... Q921J2 24648513
    13217 4o2l:B (2.4) BS02 MG 3.6.5.- GO:0000139 ... Q921J2 24648513
    13218 4o2r:B (2.25) BS02 MG 3.6.5.- GO:0000139 ... Q921J2 24648513
    13219 4o2w:A (2.0) BS01 MG 2.3.2.26 N/A Q15751 N/A
    13220 4o2w:B (2.0) BS01 MG 2.3.2.26 N/A Q15751 N/A
    13221 4o2w:D (2.0) BS01 MG 2.3.2.26 N/A Q15751 N/A
    13222 4o3n:A (1.579) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13223 4o3n:A (1.579) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13224 4o3o:A (1.698) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13225 4o3o:A (1.698) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13226 4o3p:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13227 4o3p:A (1.72) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13228 4o3q:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13229 4o3q:A (1.72) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13230 4o3r:A (1.62) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13231 4o3r:A (1.62) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13232 4o3s:A (1.717) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13233 4o3s:A (1.717) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13234 4o4i:F (2.4) BS02 MG N/A GO:0036211 ... N/A 24470331
    13235 4o5k:A (2.058) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24966350
    13236 4o5k:A (2.058) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24966350
    13237 4o6h:C (2.8) BS02 MG 3.1.13.- N/A P09992 24914986
    13238 4o6h:D (2.8) BS02 MG 3.1.13.- N/A P09992 24914986
    13239 4o6h:G (2.8) BS02 MG 3.1.13.- N/A P09992 24914986
    13240 4o6h:H (2.8) BS02 MG 3.1.13.- N/A P09992 24914986
    13241 4o6i:A (2.0) BS02 MG 3.1.13.- N/A P09992 24914986
    13242 4o6i:B (2.0) BS02 MG 3.1.13.- N/A P09992 24914986
    13243 4o7i:A (2.11) BS01 MG 3.1.3.57
    3.1.3.7    		 GO:0000103 ... C4M4T9 25004978
    13244 4o8c:B (2.0) BS01 MG 3.1.3.1 GO:0016791 ... Q8L1N9 24915075
    13245 4oat:A (1.199) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13246 4oat:B (1.199) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13247 4oau:C (2.6) BS03 MG 3.1.26.- GO:0003723 ... Q05823 24578532
    13248 4oau:C (2.6) BS04 MG 3.1.26.- GO:0003723 ... Q05823 24578532
    13249 4oav:B (2.1) BS04 MG 3.1.26.- GO:0003723 ... Q05823 24578532
    13250 4oav:B (2.1) BS05 MG 3.1.26.- GO:0003723 ... Q05823 24578532
    13251 4oav:D (2.1) BS04 MG 3.1.26.- GO:0003723 ... Q05823 24578532
    13252 4oav:D (2.1) BS05 MG 3.1.26.- GO:0003723 ... Q05823 24578532
    13253 4obb:A (1.526) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13254 4obb:B (1.526) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13255 4obp:A (2.27) BS01 MG 2.7.11.1 GO:0004672 ... O95819 24673130
    13256 4obq:A (2.19) BS01 MG 2.7.11.1 GO:0004672 ... O95819 24673130
    13257 4ocp:A (1.938) BS03 MG 2.7.1.162 GO:0004413 ... E8MF12 24816108
    13258 4ocz:A (2.94) BS01 MG 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 25079952
    13259 4od0:A (2.92) BS01 MG 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 25079952
    13260 4oe7:D (1.99) BS01 MG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    13261 4oec:A (1.9) BS01 MG 3.1.4.46 GO:0006629 ... Q5JGZ3 N/A
    13262 4oec:B (1.9) BS01 MG 3.1.4.46 GO:0006629 ... Q5JGZ3 N/A
    13263 4oec:C (1.9) BS01 MG 3.1.4.46 GO:0006629 ... Q5JGZ3 N/A
    13264 4oec:D (1.9) BS01 MG 3.1.4.46 GO:0006629 ... Q5JGZ3 N/A
    13265 4oei:A (2.6) BS01 MG ? GO:0046872 ... G1K3R9 N/A
    13266 4oei:B (2.6) BS01 MG ? GO:0046872 ... G1K3R9 N/A
    13267 4ofa:A (1.55) BS03 MG 3.2.2.- GO:0003677 ... O95243 N/A
    13268 4ofe:A (2.15) BS03 MG 3.2.2.- GO:0003677 ... O95243 N/A
    13269 4ofh:A (2.22) BS03 MG 3.2.2.- GO:0003677 ... O95243 N/A
    13270 4ofz:A (3.0) BS01 MG 3.1.3.12 GO:0000287 ... A8NS89 24992307
    13271 4og2:A (1.099) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13272 4og2:B (1.099) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13273 4ogc:A (2.8) BS03 MG 3.1.-.- GO:0003676 ... J3F2B0 24505130
    13274 4ogc:A (2.8) BS04 MG 3.1.-.- GO:0003676 ... J3F2B0 24505130
    13275 4oge:A (2.201) BS02 MG 3.1.-.- GO:0003676 ... J3F2B0 24505130
    13276 4oge:A (2.201) BS03 MG 3.1.-.- GO:0003676 ... J3F2B0 24505130
    13277 4oge:A (2.201) BS04 MG 3.1.-.- GO:0003676 ... J3F2B0 24505130
    13278 4ogu:A (2.1) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13279 4ogu:A (2.1) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13280 4ohf:B (2.53) BS02 MG ? GO:0008253 ... Q5ZZB6 24456211
    13281 4ohf:C (2.53) BS02 MG ? GO:0008253 ... Q5ZZB6 24456211
    13282 4ohf:D (2.53) BS02 MG ? GO:0008253 ... Q5ZZB6 24456211
    13283 4oin:B (2.8) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 24755292
    13284 4oin:D (2.8) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13285 4oin:F (2.8) BS03 MG ? GO:0003677 ... Q5SKW1 24755292
    13286 4oio:D (3.1) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13287 4oip:B (3.4) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 24755292
    13288 4oip:D (3.4) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13289 4oip:D (3.4) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13290 4oip:F (3.4) BS03 MG ? GO:0003677 ... Q5SKW1 24755292
    13291 4oiq:D (3.624) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13292 4oiq:F (3.624) BS03 MG ? GO:0003677 ... Q5SKW1 24755292
    13293 4oir:D (3.105) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13294 4oir:F (3.105) BS02 MG ? GO:0003677 ... Q5SKW1 24755292
    13295 4ok9:A (1.91) BS01 MG ? GO:0003723 ... A4IK89 24650662
    13296 4ok9:B (1.91) BS01 MG ? GO:0003723 ... A4IK89 24650662
    13297 4oke:B (1.7) BS03 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13298 4oke:B (1.7) BS04 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13299 4okj:A (2.1) BS01 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13300 4okj:A (2.1) BS02 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13301 4okj:A (2.1) BS03 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13302 4okj:B (2.1) BS01 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13303 4okj:B (2.1) BS02 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13304 4okj:B (2.1) BS03 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13305 4okk:A (2.21) BS02 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13306 4okk:A (2.21) BS03 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13307 4okk:A (2.21) BS04 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13308 4okk:B (2.21) BS02 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13309 4okk:B (2.21) BS03 MG 3.1.13.- GO:0000287 ... P9WJ73 24704253
    13310 4okm:A (2.1) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13311 4okm:A (2.1) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13312 4okm:B (2.1) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13313 4okm:B (2.1) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13314 4okm:C (2.1) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13315 4okm:C (2.1) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13316 4okq:A (2.5) BS01 MG ? GO:0003723 ... A4IK89 24650662
    13317 4okq:B (2.5) BS01 MG ? GO:0003723 ... A4IK89 24650662
    13318 4okz:A (1.9) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13319 4okz:A (1.9) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13320 4okz:B (1.9) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13321 4okz:B (1.9) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13322 4okz:C (1.9) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13323 4okz:C (1.9) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13324 4okz:D (1.9) BS01 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13325 4okz:D (1.9) BS02 MG 4.2.3.181 GO:0000287 ... B5HDJ6 24890698
    13326 4ol0:A (2.9) BS01 MG 3.6.5.- GO:0000054 ... P62826 24915079
    13327 4ols:D (2.27) BS02 MG ? GO:0008745 ... D6QY02 24831957
    13328 4omf:A (1.71) BS03 MG 1.12.98.1 GO:0008901 ... D9PYF9 24887099
    13329 4oo1:E (3.3) BS01 MG ? GO:0000176 ... Q12277 25043052
    13330 4oog:C (2.5) BS02 MG 3.1.26.3 GO:0003725 ... Q02555 24703949
    13331 4oog:C (2.5) BS03 MG 3.1.26.3 GO:0003725 ... Q02555 24703949
    13332 4oog:C (2.5) BS04 MG 3.1.26.3 GO:0003725 ... Q02555 24703949
    13333 4ork:A (2.3) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 24914967
    13334 4ork:B (2.3) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 24914967
    13335 4ork:C (2.3) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 24914967
    13336 4ork:D (2.3) BS02 MG 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 24914967
    13337 4otp:A (2.7) BS02 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 24948609
    13338 4otu:B (3.022) BS01 MG 2.3.2.2
    3.4.19.13    		 GO:0006751 ... Q65KZ6 24780583
    13339 4otz:A (1.36) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13340 4otz:B (1.36) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13341 4oui:A (2.17) BS02 MG N/A GO:0004553 ... N/A 24810719
    13342 4oui:B (2.17) BS02 MG N/A GO:0004553 ... N/A 24810719
    13343 4ovn:A (2.8) BS01 MG ? GO:0000086 ... P0DP23 25370050
    13344 4ovn:A (2.8) BS02 MG ? GO:0000086 ... P0DP23 25370050
    13345 4ovn:A (2.8) BS03 MG ? GO:0000086 ... P0DP23 25370050
    13346 4ovn:A (2.8) BS04 MG ? GO:0000086 ... P0DP23 25370050
    13347 4ovn:B (2.8) BS01 MG ? GO:0000086 ... P0DP23 25370050
    13348 4ovn:B (2.8) BS02 MG ? GO:0000086 ... P0DP23 25370050
    13349 4ovn:B (2.8) BS03 MG ? GO:0000086 ... P0DP23 25370050
    13350 4ovn:C (2.8) BS01 MG ? GO:0000086 ... P0DP23 25370050
    13351 4ovn:C (2.8) BS02 MG ? GO:0000086 ... P0DP23 25370050
    13352 4ovn:C (2.8) BS03 MG ? GO:0000086 ... P0DP23 25370050
    13353 4ovn:D (2.8) BS01 MG ? GO:0000086 ... P0DP23 25370050
    13354 4ovn:D (2.8) BS02 MG ? GO:0000086 ... P0DP23 25370050
    13355 4ovn:D (2.8) BS03 MG ? GO:0000086 ... P0DP23 25370050
    13356 4ovn:E (2.8) BS01 MG ? GO:0000086 ... P0DP23 25370050
    13357 4ovn:E (2.8) BS02 MG ? GO:0000086 ... P0DP23 25370050
    13358 4owm:A (1.99) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13359 4owm:A (1.99) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13360 4owm:B (1.99) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13361 4owm:B (1.99) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13362 4own:A (2.11) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13363 4own:A (2.11) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13364 4own:B (2.11) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13365 4own:B (2.11) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13366 4owo:A (1.99) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13367 4owo:A (1.99) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13368 4owo:B (1.99) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13369 4owo:B (1.99) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13370 4owq:A (1.89) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13371 4owq:A (1.89) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13372 4owq:B (1.89) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13373 4owu:A (1.89) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13374 4owu:A (1.89) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13375 4owu:B (1.89) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13376 4owu:B (1.89) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13377 4ox9:B (3.8035) BS02 MG ? GO:0003735 ... P80371 24717845
    13378 4oxd:A (2.8) BS05 MG ? GO:0006508 ... Q8DQQ1 24909784
    13379 4oz6:A (2.786) BS02 MG 5.6.2.2 GO:0016539 ... P72065 24778214
    13380 4p02:B (2.65) BS05 MG ? GO:0006011 ... Q3J126 24704788
    13381 4p0p:A (2.8) BS03 MG 3.1.22.- GO:0003677 ... Q96NY9 24733841
    13382 4p0v:A (2.4) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 24927548
    13383 4p0v:A (2.4) BS04 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 24927548
    13384 4p0w:A (2.406) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 24927548
    13385 4p0w:A (2.406) BS04 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 24927548
    13386 4p2x:A (2.4) BS01 MG 4.6.1.1 GO:0009190 ... P9WQ35 25295175
    13387 4p31:A (2.05) BS02 MG 7.5.2.- GO:0005515 ... P0A9V1 24639492
    13388 4p31:B (2.05) BS02 MG 7.5.2.- GO:0005515 ... P0A9V1 24639492
    13389 4p32:A (1.55) BS02 MG 7.5.2.- GO:0005515 ... P0A9V1 24639492
    13390 4p32:B (1.55) BS02 MG 7.5.2.- GO:0005515 ... P0A9V1 24639492
    13391 4p4m:A (1.9185) BS04 MG 2.7.7.7 GO:0003677 ... Q9U6N3 24666693
    13392 4p4o:A (2.3001) BS05 MG 2.7.7.7 GO:0003677 ... Q9U6N3 24666693
    13393 4p4s:A (3.3) BS01 MG ? GO:0003924 ... P20591 25295396
    13394 4p4s:B (3.3) BS01 MG ? GO:0003924 ... P20591 25295396
    13395 4p6f:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25198768
    13396 4p6f:QH (3.6) BS02 MG N/A GO:0003735 ... N/A 25198768
    13397 4p6f:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25198768
    13398 4p6f:RD (3.6) BS02 MG ? GO:0002181 ... P60405 25198768
    13399 4p6f:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25198768
    13400 4p6f:RP (3.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25198768
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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