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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 4mpo:E (1.9) BS05 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13002 4mpo:F (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13003 4mpo:F (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13004 4mpo:G (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13005 4mpo:G (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13006 4mpo:H (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13007 4mpo:H (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13008 4mpo:H (1.9) BS05 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13009 4mq9:D (3.35) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    13010 4mrt:A (2.0) BS01 MG 2.7.8.7 GO:0000287 ... P39135 24704508
    13011 4msv:B (2.5) BS01 MG ? N/A O95407 27806260
    13012 4mum:A (1.271) BS01 MG 3.1.3.- GO:0008253 ... Q9NPB1 24506201
    13013 4mv4:A (1.61) BS02 MG 6.3.4.14 GO:0003824 ... P43873 26020841
    13014 4mwh:A (2.09) BS02 MG 2.7.11.1 GO:0000028 ... P15790 24531484
    13015 4mwh:A (2.09) BS03 MG 2.7.11.1 GO:0000028 ... P15790 24531484
    13016 4mzu:B (2.2) BS04 MG ? GO:0016740 ... Q12KT8 24128043
    13017 4n0d:A (1.55) BS01 MG 3.6.5.1 GO:0000287 ... P10824 24596087
    13018 4n0g:A (2.382) BS02 MG 3.1.3.16 GO:0004722 ... P49598 24165892
    13019 4n0g:A (2.382) BS03 MG 3.1.3.16 GO:0004722 ... P49598 24165892
    13020 4n0g:A (2.382) BS04 MG 3.1.3.16 GO:0004722 ... P49598 24165892
    13021 4n0g:B (2.382) BS02 MG 3.1.3.16 GO:0004722 ... P49598 24165892
    13022 4n0g:B (2.382) BS03 MG 3.1.3.16 GO:0004722 ... P49598 24165892
    13023 4n0g:B (2.382) BS04 MG 3.1.3.16 GO:0004722 ... P49598 24165892
    13024 4n0n:A (2.0) BS04 MG 2.7.7.48
    3.4.19.12
    3.4.21.-
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0005524 ... P19811 24369429
    13025 4n1a:A (3.24) BS04 MG ? GO:0000166 ... D1A4G7 25865481
    13026 4n1a:A (3.24) BS05 MG ? GO:0000166 ... D1A4G7 25865481
    13027 4n1a:B (3.24) BS04 MG ? GO:0000166 ... D1A4G7 25865481
    13028 4n1a:B (3.24) BS05 MG ? GO:0000166 ... D1A4G7 25865481
    13029 4n1a:C (3.24) BS04 MG ? GO:0000166 ... D1A4G7 25865481
    13030 4n1a:C (3.24) BS05 MG ? GO:0000166 ... D1A4G7 25865481
    13031 4n1a:E (3.24) BS02 MG ? GO:0000166 ... D1A4G7 25865481
    13032 4n1a:E (3.24) BS03 MG ? GO:0000166 ... D1A4G7 25865481
    13033 4n1z:F (2.35) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 25411474
    13034 4n1z:F (2.35) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 25411474
    13035 4n41:B (2.248) BS03 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13036 4n4x:A (2.501) BS01 MG ? GO:0002395 ... P0AEX9
    Q9NP55    		 N/A
    13037 4n56:A (2.2) BS03 MG 2.7.7.7 GO:0001882 ... P19821 25537790
    13038 4n57:A (2.35) BS01 MG ? GO:0000166 ... O68183 N/A
    13039 4n57:B (2.35) BS01 MG ? GO:0000166 ... O68183 N/A
    13040 4n5s:A (1.67) BS03 MG 2.7.7.7 GO:0001882 ... P19821 25537790
    13041 4n5v:A (1.9) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13042 4n5v:A (1.9) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13043 4n5v:B (1.9) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13044 4n5v:B (1.9) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13045 4n67:A (1.55) BS02 MG 2.7.7.108 N/A A0A0H3LV04 34442725
    13046 4n93:A (2.03) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13047 4n93:A (2.03) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13048 4n93:B (2.03) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13049 4n93:B (2.03) BS04 MG 2.4.2.18 GO:0000162 ... P9WFX5 24712732
    13050 4n9u:A (2.11) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13051 4n9u:A (2.11) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13052 4nb4:F (2.25) BS04 MG 2.7.1.33 GO:0004594 ... Q6G7I0 24470271
    13053 4nbm:C (1.61) BS01 MG ? N/A Q9FN03 26097745
    13054 4nbm:C (1.61) BS02 MG ? N/A Q9FN03 26097745
    13055 4nbm:D (1.61) BS01 MG ? N/A Q9FN03 26097745
    13056 4nbs:A (2.305) BS01 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    13057 4nc4:A (1.75) BS01 MG ? N/A Q9FN03 26097745
    13058 4nc4:C (1.75) BS01 MG ? N/A Q9FN03 26097745
    13059 4nca:A (2.489) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13060 4nca:A (2.489) BS07 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13061 4nca:B (2.489) BS06 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13062 4nca:B (2.489) BS07 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13063 4ncb:A (2.189) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13064 4ncb:A (2.189) BS07 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13065 4ncb:B (2.189) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13066 4ncb:B (2.189) BS06 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    13067 4ncj:A (2.0) BS03 MG ? GO:0006302 ... P58301 24493214
    13068 4ncj:B (2.0) BS03 MG ? GO:0006302 ... P58301 24493214
    13069 4ncj:C (2.0) BS05 MG ? GO:0006302 ... P58301 24493214
    13070 4ncj:D (2.0) BS05 MG ? GO:0006302 ... P58301 24493214
    13071 4ncn:A (1.87) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    13072 4ncn:B (1.87) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    13073 4ndo:A (1.35) BS03 MG ? GO:0005737 ... P84308 24945101
    13074 4ndp:A (1.6) BS04 MG ? GO:0005737 ... P84308 24945101
    13075 4ndq:A (1.751) BS03 MG ? GO:0005737 ... P84308 24945101
    13076 4ndr:A (2.0) BS03 MG ? GO:0005737 ... P84308 24945101
    13077 4neh:A (2.7505) BS02 MG ? GO:0005178 ... P20702 24385486
    13078 4neh:B (2.7505) BS03 MG ? GO:0001540 ... P05107 24385486
    13079 4nen:A (2.9012) BS05 MG ? GO:0005178 ... P20702 24385486
    13080 4nen:B (2.9012) BS03 MG ? GO:0001540 ... P05107 24385486
    13081 4neu:A (2.57) BS01 MG 2.7.11.1 GO:0004672 ... Q13546 24900635
    13082 4nfi:F (1.85) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 29036218
    13083 4nfi:F (1.85) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 29036218
    13084 4nfj:F (2.05) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 29036218
    13085 4nfj:F (2.05) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 29036218
    13086 4nfl:A (1.375) BS01 MG 3.1.3.- GO:0008253 ... Q9NPB1 25178098
    13087 4ng4:A (2.78) BS01 MG 2.7.2.3 GO:0004618 ... Q83AU6 26033498
    13088 4ng4:B (2.78) BS01 MG 2.7.2.3 GO:0004618 ... Q83AU6 26033498
    13089 4ng4:C (2.78) BS01 MG 2.7.2.3 GO:0004618 ... Q83AU6 26033498
    13090 4ng6:A (2.35) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13091 4ng6:A (2.35) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13092 4nh0:A (2.9) BS01 MG ? GO:0000166 ... D1A4G7 25865481
    13093 4nh0:B (2.9) BS01 MG ? GO:0000166 ... D1A4G7 25865481
    13094 4nh1:A (3.3) BS01 MG 2.7.11.1 GO:0004672 ... P68400 24594356
    13095 4nh1:B (3.3) BS01 MG 2.7.11.1 GO:0004672 ... P68400 24594356
    13096 4nic:A (3.18) BS01 MG N/A GO:0000160 ... N/A 24990372
    13097 4nic:B (3.18) BS01 MG N/A GO:0000160 ... N/A 24990372
    13098 4nic:C (3.18) BS01 MG N/A GO:0000160 ... N/A 24990372
    13099 4nic:D (3.18) BS01 MG N/A GO:0000160 ... N/A 24990372
    13100 4nkb:A (2.3) BS01 MG 2.7.11.1 N/A Q9GT24 24980795
    13101 4nke:A (1.46) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13102 4nke:A (1.46) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13103 4nkf:A (2.0) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13104 4nkf:A (2.0) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13105 4nlk:A (2.494) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    13106 4nlk:A (2.494) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    13107 4nln:A (2.261) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    13108 4nm0:A (2.5) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 24642411
    13109 4nm1:A (2.415) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    13110 4nm1:A (2.415) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    13111 4nm3:A (2.1) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 24642411
    13112 4nm5:A (2.3) BS04 MG 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 24642411
    13113 4nm7:A (2.3) BS04 MG 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 24642411
    13114 4nmn:A (3.301) BS02 MG 3.6.4.12 GO:0003677 ... O67450 24373746
    13115 4nna:A (2.103) BS01 MG 4.1.3.- GO:0043720 ... C5AJX5 24616091
    13116 4nnb:A (2.0) BS01 MG 4.1.3.- GO:0043720 ... C5AJX5 24616091
    13117 4nnn:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 24403024
    13118 4nnn:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 24403024
    13119 4nnn:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13120 4nnn:N (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 24403024
    13121 4nnn:V (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    13122 4nnn:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13123 4nnn:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 24403024
    13124 4nnw:G (2.6) BS01 MG ? GO:0000502 ... P21243 24403024
    13125 4nnw:I (2.6) BS01 MG ? GO:0000502 ... P25451 24403024
    13126 4nnw:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13127 4nnw:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 24403024
    13128 4nnw:V (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    13129 4nnw:Y (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13130 4nnw:Z (2.6) BS01 MG ? GO:0000502 ... P23724 24403024
    13131 4no1:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 24403024
    13132 4no1:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 24403024
    13133 4no1:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13134 4no1:N (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P38624 24403024
    13135 4no1:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    13136 4no1:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13137 4no1:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 24403024
    13138 4no4:A (1.399) BS03 MG ? GO:0002317 ... P11762 N/A
    13139 4no4:C (1.399) BS03 MG ? GO:0002317 ... P11762 N/A
    13140 4no4:F (1.399) BS03 MG ? GO:0002317 ... P11762 N/A
    13141 4no6:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 24403024
    13142 4no6:I (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P25451 24403024
    13143 4no6:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13144 4no6:N (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P38624 24403024
    13145 4no6:V (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    13146 4no6:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13147 4no6:Z (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P23724 24403024
    13148 4no8:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 24403024
    13149 4no8:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 24403024
    13150 4no8:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13151 4no8:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    13152 4no8:Y (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13153 4no8:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 24403024
    13154 4no9:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 24403024
    13155 4no9:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13156 4no9:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 24403024
    13157 4no9:V (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    13158 4no9:Y (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    13159 4no9:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 24403024
    13160 4nq3:A (2.702) BS02 MG 3.5.2.15 GO:0016787 ... A8IKD2 24915109
    13161 4nq3:B (2.702) BS02 MG 3.5.2.15 GO:0016787 ... A8IKD2 24915109
    13162 4nqr:A (1.09) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13163 4nqr:B (1.09) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13164 4nru:A (2.3) BS02 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 24622391
    13165 4nru:B (2.3) BS02 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 24622391
    13166 4nru:C (2.3) BS02 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 24622391
    13167 4nru:D (2.3) BS02 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 24622391
    13168 4nru:E (2.3) BS03 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 24622391
    13169 4nru:F (2.3) BS02 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 24622391
    13170 4nst:A (2.2) BS03 MG 2.7.11.22
    2.7.11.23    		 GO:0004672 ... Q9NYV4 24662513
    13171 4nst:C (2.2) BS03 MG 2.7.11.22
    2.7.11.23    		 GO:0004672 ... Q9NYV4 24662513
    13172 4nu1:A (2.5) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0000320 ... Q9WV60 24642411
    13173 4nua:A (1.43) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13174 4nua:A (1.43) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    13175 4nv0:A (1.65) BS01 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    13176 4nv0:B (1.65) BS01 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    13177 4nv3:A (1.09) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13178 4nv3:B (1.09) BS02 MG ? GO:0046872 ... Q3MFZ5 N/A
    13179 4nwi:A (2.05) BS01 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    13180 4nwi:B (2.05) BS01 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q9W197 24603684
    13181 4nxm:B (3.65) BS02 MG ? GO:0003735 ... P80371 N/A
    13182 4nxm:C (3.65) BS02 MG ? GO:0003676 ... P80372 N/A
    13183 4nxm:C (3.65) BS03 MG ? GO:0003676 ... P80372 N/A
    13184 4nxm:D (3.65) BS02 MG ? GO:0003723 ... P80373 N/A
    13185 4nxm:K (3.65) BS02 MG ? GO:0003735 ... P80376 N/A
    13186 4nxm:Q (3.65) BS02 MG N/A GO:0003735 ... N/A N/A
    13187 4nxn:B (3.544) BS02 MG ? GO:0003735 ... P80371 N/A
    13188 4nxn:D (3.544) BS03 MG ? GO:0003723 ... P80373 N/A
    13189 4nxn:L (3.544) BS03 MG ? GO:0000049 ... F6DEQ7 N/A
    13190 4nxn:M (3.544) BS02 MG ? GO:0000049 ... P80377 N/A
    13191 4nxn:Q (3.544) BS02 MG N/A GO:0003735 ... N/A N/A
    13192 4nxn:T (3.544) BS02 MG ? GO:0003723 ... P80380 N/A
    13193 4nyi:Q (2.9612) BS01 MG 3.6.5.2 GO:0003924 ... P01112 24550516
    13194 4nyj:Q (2.8522) BS01 MG 3.6.5.2 GO:0003924 ... P01112 24550516
    13195 4nym:Q (3.5529) BS01 MG 3.6.5.2 GO:0003924 ... P01112 24550516
    13196 4nyz:A (2.15) BS02 MG 2.7.7.48
    3.4.22.28
    3.6.4.13    		 GO:0003723 ... P12296 24600002
    13197 4nz3:A (2.114) BS02 MG N/A GO:0004553 ... N/A 24810719
    13198 4nz3:B (2.114) BS02 MG N/A GO:0004553 ... N/A 24810719
    13199 4nzm:A (2.0) BS03 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    13200 4nzm:A (2.0) BS04 MG 2.7.4.24 GO:0000829 ... O43314 24768307
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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