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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12801 4lrt:C (1.5) BS02 MG 4.1.3.39
    4.1.3.43    		 GO:0003824 ... D1A3K8 N/A
    12802 4lrz:A (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12803 4lrz:A (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12804 4lrz:B (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12805 4lrz:B (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12806 4lrz:C (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12807 4lrz:C (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12808 4lrz:D (2.32) BS02 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12809 4lrz:D (2.32) BS03 MG 2.7.1.121 GO:0000287 ... P76014 24440518
    12810 4lsb:A (1.8) BS01 MG ? GO:0003824 ... B4EFV2 N/A
    12811 4lsb:B (1.8) BS01 MG ? GO:0003824 ... B4EFV2 N/A
    12812 4lse:A (2.1) BS01 MG ? GO:0001530 ... P02931 24106986
    12813 4lse:B (2.1) BS01 MG ? GO:0001530 ... P02931 24106986
    12814 4lse:C (2.1) BS01 MG ? GO:0001530 ... P02931 24106986
    12815 4lse:C (2.1) BS02 MG ? GO:0001530 ... P02931 24106986
    12816 4lsi:A (2.089) BS01 MG ? GO:0001530 ... P02931 24106986
    12817 4lsi:A (2.089) BS02 MG ? GO:0001530 ... P02931 24106986
    12818 4lsi:B (2.089) BS03 MG ? GO:0001530 ... P02931 24106986
    12819 4lsi:B (2.089) BS04 MG ? GO:0001530 ... P02931 24106986
    12820 4lsi:C (2.089) BS02 MG ? GO:0001530 ... P02931 24106986
    12821 4lsi:C (2.089) BS03 MG ? GO:0001530 ... P02931 24106986
    12822 4lsi:C (2.089) BS04 MG ? GO:0001530 ... P02931 24106986
    12823 4lsi:C (2.089) BS05 MG ? GO:0001530 ... P02931 24106986
    12824 4lsk:QF (3.48001) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    12825 4lsk:QH (3.48001) BS02 MG N/A GO:0003735 ... N/A 25128388
    12826 4lsk:QM (3.48001) BS03 MG ? GO:0000049 ... P80377 25128388
    12827 4lsk:RD (3.48001) BS02 MG ? GO:0002181 ... P60405 25128388
    12828 4lsk:RD (3.48001) BS03 MG ? GO:0002181 ... P60405 25128388
    12829 4lsk:XM (3.48001) BS03 MG ? GO:0000049 ... P80377 25128388
    12830 4lsk:YD (3.48001) BS02 MG ? GO:0002181 ... P60405 25128388
    12831 4lsk:YP (3.48001) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    12832 4lt8:QF (3.14) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    12833 4lt8:QH (3.14) BS02 MG N/A GO:0003735 ... N/A 25128388
    12834 4lt8:QM (3.14) BS03 MG ? GO:0000049 ... P80377 25128388
    12835 4lt8:RD (3.14) BS03 MG ? GO:0002181 ... P60405 25128388
    12836 4lt8:RD (3.14) BS04 MG ? GO:0002181 ... P60405 25128388
    12837 4lt8:XM (3.14) BS03 MG ? GO:0000049 ... P80377 25128388
    12838 4lt8:YD (3.14) BS02 MG ? GO:0002181 ... P60405 25128388
    12839 4ltz:A (2.448) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 24517311
    12840 4luu:A (1.95) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 24517311
    12841 4lv7:A (2.6) BS03 MG 2.7.1.158 GO:0005524 ... Q93YN9 24165122
    12842 4lwz:A (2.55) BS02 MG 3.6.5.2 GO:0003924 ... P62491 24248336
    12843 4lwz:C (2.55) BS02 MG 3.6.5.2 GO:0003924 ... P62491 24248336
    12844 4lx0:A (2.19) BS01 MG 3.6.5.2 GO:0003924 ... P62491 24248336
    12845 4lx0:C (2.19) BS01 MG 3.6.5.2 GO:0003924 ... P62491 24248336
    12846 4lx8:A (2.2) BS01 MG ? GO:0000160 ... A0A0H3AMJ9 24066084
    12847 4lxw:A (2.092) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 24517311
    12848 4ly6:A (3.6) BS02 MG ? GO:0005524 ... O67198 24240239
    12849 4ly6:G (3.6) BS02 MG ? GO:0005524 ... O67198 24240239
    12850 4ly6:H (3.6) BS02 MG ? GO:0005524 ... O67198 24240239
    12851 4ly6:K (3.6) BS02 MG ? GO:0005524 ... O67198 24240239
    12852 4ly6:N (3.6) BS02 MG ? GO:0005524 ... O67198 24240239
    12853 4ly6:Q (3.6) BS02 MG ? GO:0005524 ... O67198 24240239
    12854 4lyj:A (1.927) BS01 MG 3.6.5.2 GO:0003924 ... P01116 24256730
    12855 4lyk:A (2.4) BS01 MG 3.1.4.52 N/A P21514 24451384
    12856 4lyk:B (2.4) BS01 MG 3.1.4.52 N/A P21514 24451384
    12857 4lyk:C (2.4) BS01 MG 3.1.4.52 N/A P21514 24451384
    12858 4lyk:D (2.4) BS01 MG 3.1.4.52 N/A P21514 24451384
    12859 4lyx:A (1.23) BS03 MG 1.16.3.1 GO:0004322 ... P07798 25849404
    12860 4lyx:A (1.23) BS04 MG 1.16.3.1 GO:0004322 ... P07798 25849404
    12861 4lz0:A (1.754) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 24517311
    12862 4lz3:A (2.095) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 24517311
    12863 4lzc:A (2.457) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 24517311
    12864 4lzz:B (3.21) BS02 MG ? GO:0005524 ... O67198 24240239
    12865 4lzz:L (3.21) BS03 MG ? GO:0005524 ... O67198 24240239
    12866 4lzz:X (3.21) BS02 MG ? GO:0005524 ... O67198 24240239
    12867 4m04:A (1.898) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 24487959
    12868 4m04:A (1.898) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 24487959
    12869 4m0a:A (1.85) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 24487959
    12870 4m0a:A (1.85) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 24487959
    12871 4m0l:C (2.6) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 24598735
    12872 4m2z:A (2.85) BS03 MG 3.1.26.3 GO:0003723 ... O67082 24274754
    12873 4m2z:B (2.85) BS03 MG 3.1.26.3 GO:0003723 ... O67082 24274754
    12874 4m30:A (2.501) BS03 MG 3.1.26.3 GO:0003723 ... O67082 24274754
    12875 4m30:A (2.501) BS04 MG 3.1.26.3 GO:0003723 ... O67082 24274754
    12876 4m30:B (2.501) BS03 MG 3.1.26.3 GO:0003723 ... O67082 24274754
    12877 4m30:B (2.501) BS04 MG 3.1.26.3 GO:0003723 ... O67082 24274754
    12878 4m32:A (1.86) BS01 MG ? GO:0003677 ... A0QXB7 24573673
    12879 4m32:B (1.86) BS03 MG ? GO:0003677 ... A0QXB7 24573673
    12880 4m32:C (1.86) BS01 MG ? GO:0003677 ... A0QXB7 24573673
    12881 4m33:A (2.22) BS02 MG ? GO:0003677 ... A0QXB7 24573673
    12882 4m33:B (2.22) BS03 MG ? GO:0003677 ... A0QXB7 24573673
    12883 4m33:C (2.22) BS01 MG ? GO:0003677 ... A0QXB7 24573673
    12884 4m34:A (2.05) BS02 MG ? GO:0003677 ... A0QXB7 24573673
    12885 4m34:B (2.05) BS02 MG ? GO:0003677 ... A0QXB7 24573673
    12886 4m34:C (2.05) BS01 MG ? GO:0003677 ... A0QXB7 24573673
    12887 4m35:A (2.05) BS02 MG ? GO:0003677 ... A0QXB7 24573673
    12888 4m35:B (2.05) BS03 MG ? GO:0003677 ... A0QXB7 24573673
    12889 4m35:C (2.05) BS01 MG ? GO:0003677 ... A0QXB7 24573673
    12890 4m3q:A (2.718) BS01 MG 2.7.10.1 GO:0004672 ... Q12866 24195762
    12891 4m47:A (2.37) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24425881
    12892 4m5j:A (1.696) BS03 MG 2.7.6.3 GO:0000287 ... P26281 24613625
    12893 4m5j:A (1.696) BS04 MG 2.7.6.3 GO:0000287 ... P26281 24613625
    12894 4m5n:A (2.0) BS01 MG 2.7.6.3 GO:0000287 ... P26281 24613625
    12895 4m5n:A (2.0) BS02 MG 2.7.6.3 GO:0000287 ... P26281 24613625
    12896 4m5n:B (2.0) BS01 MG 2.7.6.3 GO:0000287 ... P26281 24613625
    12897 4m5n:B (2.0) BS02 MG 2.7.6.3 GO:0000287 ... P26281 24613625
    12898 4m69:A (2.497) BS02 MG 2.7.11.1 GO:0004672 ... Q9QZL0 24095729
    12899 4m6u:A (1.8) BS01 MG 5.1.2.2 GO:0000287 ... P11444 24472022
    12900 4m6u:B (1.8) BS01 MG 5.1.2.2 GO:0000287 ... P11444 24472022
    12901 4m6v:A (2.4) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    12902 4m6v:B (2.4) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    12903 4m6v:C (2.4) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    12904 4m6v:D (2.4) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    12905 4m83:B (1.698) BS03 MG 2.4.1.- GO:0008194 ... Q53685 N/A
    12906 4m8n:E (3.294) BS01 MG 3.6.5.2 GO:0003924 ... P61224 24137545
    12907 4m8n:F (3.294) BS01 MG 3.6.5.2 GO:0003924 ... P61224 24137545
    12908 4m8n:G (3.294) BS01 MG 3.6.5.2 GO:0003924 ... P61224 24137545
    12909 4m8n:H (3.294) BS01 MG 3.6.5.2 GO:0003924 ... P61224 24137545
    12910 4m8o:A (2.2) BS04 MG 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 24292646
    12911 4m9j:A (2.038) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24133209
    12912 4m9l:A (2.091) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24133209
    12913 4m9n:A (2.275) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24133209
    12914 4m9q:A (2.5) BS02 MG 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    12915 4m9q:B (2.5) BS02 MG 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    12916 4m9q:C (2.5) BS02 MG 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    12917 4m9s:A (3.207) BS02 MG ? GO:0000287 ... P30429 24065769
    12918 4m9s:B (3.207) BS02 MG ? GO:0000287 ... P30429 24065769
    12919 4m9s:D (3.207) BS02 MG ? GO:0000287 ... P30429 24065769
    12920 4m9x:A (3.344) BS02 MG ? GO:0000287 ... P30429 24065769
    12921 4m9x:B (3.344) BS02 MG ? GO:0000287 ... P30429 24065769
    12922 4m9y:A (4.2) BS02 MG ? GO:0000287 ... P30429 24065769
    12923 4m9y:B (4.2) BS02 MG ? GO:0000287 ... P30429 24065769
    12924 4m9z:A (3.405) BS02 MG ? GO:0000287 ... P30429 24065769
    12925 4m9z:B (3.405) BS02 MG ? GO:0000287 ... P30429 24065769
    12926 4maz:A (1.6) BS01 MG 3.2.1.10 GO:0004556 ... O06994 24015933
    12927 4mdb:A (1.7) BS02 MG 3.1.-.- GO:0003676 ... Q7JQ07 24397848
    12928 4mdb:A (1.7) BS03 MG 3.1.-.- GO:0003676 ... Q7JQ07 24397848
    12929 4me6:A (2.1) BS01 MG 6.3.2.4 GO:0003824 ... Q5H614 24440607
    12930 4mex:D (3.902) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 24843001
    12931 4mex:I (3.902) BS02 MG 2.7.7.6 GO:0000345 ... P0A8V2 24843001
    12932 4mex:J (3.902) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 24843001
    12933 4mey:D (3.948) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 24843001
    12934 4mey:J (3.948) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 24843001
    12935 4mfd:A (2.55) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12936 4mfd:B (2.55) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12937 4mfd:C (2.55) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12938 4mfd:D (2.55) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12939 4mfe:A (2.61) BS04 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12940 4mfe:B (2.61) BS04 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12941 4mfe:C (2.61) BS04 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12942 4mfe:D (2.61) BS04 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12943 4mff:A (2.55) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24694247
    12944 4mg2:A (2.3) BS02 MG 1.14.11.33 GO:0006281 ... Q6NS38 N/A
    12945 4mgg:A (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12946 4mgg:B (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12947 4mgg:C (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12948 4mgg:D (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12949 4mgg:E (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12950 4mgg:F (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12951 4mgg:G (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12952 4mgg:H (2.2) BS01 MG 4.2.1.171 GO:0000287 ... A0NXQ8 N/A
    12953 4mgh:A (2.65) BS02 MG 6.3.5.3 GO:0004642 ... P74881 24223728
    12954 4mgt:A (2.6) BS03 MG 1.14.11.33 GO:0006281 ... Q6NS38 N/A
    12955 4mh7:A (2.51) BS01 MG 2.7.10.1 GO:0004672 ... Q12866 24219778
    12956 4mh7:B (2.51) BS01 MG 2.7.10.1 GO:0004672 ... Q12866 24219778
    12957 4mha:B (2.59) BS01 MG 2.7.10.1 GO:0004672 ... Q12866 24219778
    12958 4mhx:B (2.0) BS02 MG 3.10.1.1 N/A P51688 24816101
    12959 4mim:A (2.65) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12960 4mim:B (2.65) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12961 4mim:C (2.65) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12962 4mim:D (2.65) BS03 MG 6.4.1.1 GO:0003824 ... Q2K340 24157795
    12963 4mit:A (2.35) BS02 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12964 4mit:A (2.35) BS03 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12965 4mit:B (2.35) BS02 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12966 4mit:B (2.35) BS03 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12967 4mit:C (2.35) BS02 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12968 4mit:C (2.35) BS03 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12969 4mit:D (2.35) BS02 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12970 4mit:D (2.35) BS03 MG 3.6.5.2 GO:0003924 ... Q24816 25529118
    12971 4miw:A (1.72) BS01 MG 2.7.7.48
    3.1.-.-    		 N/A Q6GWS2 24516554
    12972 4mk7:A (2.8) BS01 MG 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 24069953
    12973 4mks:A (2.079) BS01 MG 4.2.1.11 GO:0000015 ... Q042F4 24859038
    12974 4mks:B (2.079) BS01 MG 4.2.1.11 GO:0000015 ... Q042F4 24859038
    12975 4mku:A (1.3) BS01 MG 1.16.3.1 GO:0004322 ... P07798 25849404
    12976 4mku:A (1.3) BS02 MG 1.16.3.1 GO:0004322 ... P07798 25849404
    12977 4mku:A (1.3) BS03 MG 1.16.3.1 GO:0004322 ... P07798 25849404
    12978 4ml9:A (1.841) BS01 MG ? GO:0000105 ... D1AMR0 N/A
    12979 4ml9:B (1.841) BS01 MG ? GO:0000105 ... D1AMR0 N/A
    12980 4mmw:A (1.647) BS01 MG ? GO:0000287 ... Q7CSI0 N/A
    12981 4mmw:A (1.647) BS02 MG ? GO:0000287 ... Q7CSI0 N/A
    12982 4mmw:B (1.647) BS01 MG ? GO:0000287 ... Q7CSI0 N/A
    12983 4mmw:B (1.647) BS02 MG ? GO:0000287 ... Q7CSI0 N/A
    12984 4mn3:A (1.542) BS02 MG ? GO:0035102 ... O95931 24625057
    12985 4mnd:A (2.66) BS01 MG 2.7.7.74
    2.7.8.34    		 GO:0008654 ... O29976 24942835
    12986 4mne:A (2.8483) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 25155755
    12987 4mne:D (2.8483) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 25155755
    12988 4mne:E (2.8483) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 25155755
    12989 4mne:H (2.8483) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 25155755
    12990 4mpj:A (1.5) BS02 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    12991 4mpo:A (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12992 4mpo:A (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12993 4mpo:B (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12994 4mpo:B (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12995 4mpo:C (1.9) BS01 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12996 4mpo:C (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12997 4mpo:D (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12998 4mpo:D (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12999 4mpo:E (1.9) BS01 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13000 4mpo:E (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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