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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1kc7:A (2.2) BS01 MG 2.7.9.1 GO:0003824 ... P22983 11790099
    1002 1kc8:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    1003 1kc8:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    1004 1kc8:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    1005 1kc8:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    1006 1kcz:A (1.9) BS01 MG 4.3.1.2 GO:0016829 ... Q05514 11748244
    1007 1kcz:B (1.9) BS01 MG 4.3.1.2 GO:0016829 ... Q05514 11748244
    1008 1kd1:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    1009 1kd1:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    1010 1kd1:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    1011 1kd1:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    1012 1kdh:A (3.0) BS02 MG 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 11823435
    1013 1kek:A (1.9) BS01 MG 1.2.7.1 GO:0003824 ... P94692 11752578
    1014 1kek:B (1.9) BS01 MG 1.2.7.1 GO:0003824 ... P94692 11752578
    1015 1kh4:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1016 1kh4:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1017 1kh5:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1018 1kh5:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1019 1kh7:A (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1020 1kh7:B (2.4) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1021 1kh9:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1022 1khk:A (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1023 1khk:B (2.5) BS03 MG 3.1.3.1 GO:0000287 ... P00634 11884134
    1024 1khz:B (2.04) BS01 MG 3.6.1.13 GO:0000287 ... Q93K97 12135348
    1025 1khz:B (2.04) BS02 MG 3.6.1.13 GO:0000287 ... Q93K97 12135348
    1026 1kj8:A (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1027 1kj8:B (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1028 1kj9:A (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1029 1kj9:B (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1030 1kji:A (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1031 1kji:B (1.6) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1032 1kjj:A (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1033 1kjj:B (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1034 1kjq:A (1.05) BS01 MG 6.3.1.21 GO:0000287 ... P33221 11953435
    1035 1kk7:A (3.2) BS01 MG ? GO:0003774 ... P24733 12297624
    1036 1kk7:Y (3.2) BS01 MG ? GO:0005509 ... P13543 12297624
    1037 1kk8:A (2.3) BS01 MG ? GO:0003774 ... P24733 12297624
    1038 1kk8:B (2.3) BS01 MG ? GO:0005509 ... P13543 12297624
    1039 1kkf:A (2.6) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    1040 1kkr:A (2.1) BS01 MG 4.3.1.2 GO:0016829 ... O66145 11796115
    1041 1kkr:B (2.1) BS02 MG 4.3.1.2 GO:0016829 ... O66145 11796115
    1042 1kmi:Y (2.9) BS01 MG ? GO:0000156 ... P0AE67 12080332
    1043 1kmq:A (1.55) BS01 MG 3.6.5.2 GO:0000902 ... P61586 12777804
    1044 1kmq:A (1.55) BS02 MG 3.6.5.2 GO:0000902 ... P61586 12777804
    1045 1kny:A (2.5) BS01 MG 2.7.7.- GO:0016740 ... P05057 7577914
    1046 1kny:B (2.5) BS01 MG 2.7.7.- GO:0016740 ... P05057 7577914
    1047 1kqm:A (3.0) BS01 MG ? GO:0003774 ... P24733 12297624
    1048 1kqm:B (3.0) BS01 MG ? GO:0005509 ... P13543 12297624
    1049 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    1050 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    1051 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    1052 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    1053 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    1054 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    1055 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    1056 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    1057 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    1058 1ksz:A (2.8) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    1059 1ktg:A (1.8) BS02 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    1060 1ktg:A (1.8) BS03 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    1061 1ktg:B (1.8) BS02 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    1062 1ktg:B (1.8) BS03 MG 3.6.1.- GO:0004081 ... Q9U2M7 11937063
    1063 1kv8:A (1.62) BS02 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    1064 1kvk:A (2.4) BS01 MG 2.7.1.36 GO:0000287 ... P17256 11877411
    1065 1kw1:A (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    1066 1kw1:B (2.2) BS01 MG 4.1.1.85 GO:0000287 ... P39304 11900527
    1067 1kwo:A (3.8) BS01 MG ? GO:0003774 ... P24733 12297624
    1068 1kwo:B (3.8) BS01 MG ? GO:0005509 ... P13543 12297624
    1069 1kxg:A (2.0) BS01 MG ? GO:0005164 ... Q9Y275 11862220
    1070 1kxg:F (2.0) BS01 MG ? GO:0005164 ... Q9Y275 11862220
    1071 1ky2:A (1.6) BS01 MG ? GO:0003924 ... P32939 11937061
    1072 1l2o:A (2.8) BS01 MG ? GO:0003774 ... P24733 12297624
    1073 1l2o:B (2.8) BS01 MG ? GO:0005509 ... P13543 12297624
    1074 1l3r:E (2.0) BS02 MG 2.7.11.11 GO:0000122 ... P05132 11896404
    1075 1l3t:A (1.7) BS05 MG 2.7.7.7 GO:0003676 ... P52026 12649320
    1076 1l3u:A (1.8) BS06 MG 2.7.7.7 GO:0003676 ... P52026 12649320
    1077 1l3v:A (1.71) BS06 MG 2.7.7.7 GO:0003676 ... P52026 12649320
    1078 1l5y:A (2.1) BS01 MG ? GO:0000160 ... P13632 12368235
    1079 1l5y:B (2.1) BS01 MG ? GO:0000160 ... P13632 12368235
    1080 1l7m:A (1.48) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    1081 1l7m:B (1.48) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    1082 1l7n:A (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    1083 1l7n:B (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    1084 1l8a:A (1.85) BS02 MG 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    1085 1l8a:B (1.85) BS01 MG 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    1086 1l8p:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    1087 1l8p:B (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    1088 1l8p:C (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    1089 1l8p:D (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    1090 1l8t:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 12006485
    1091 1lf0:A (1.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12213964
    1092 1lfd:B (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9628477
    1093 1lfd:D (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9628477
    1094 1lkx:A (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    1095 1lkx:B (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    1096 1lkx:C (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    1097 1lkx:D (3.0) BS01 MG ? GO:0003774 ... Q03479 12032065
    1098 1lm3:B (2.7) BS01 MG ? GO:0005506 ... P0ABE7 11914078
    1099 1lny:A (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    1100 1lny:B (2.2) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    1101 1lnz:A (2.6) BS01 MG 3.6.5.- GO:0000287 ... P20964 12429099
    1102 1lon:A (2.1) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    1103 1lp1:B (2.3) BS01 MG ? GO:0019865 ... P38507 12604795
    1104 1lp4:A (1.86) BS01 MG 2.7.11.1 GO:0004672 ... P28523 15740749
    1105 1lvh:A (2.3) BS01 MG 5.4.2.6 GO:0000287 ... P71447 12081483
    1106 1lvh:B (2.3) BS01 MG 5.4.2.6 GO:0000287 ... P71447 12081483
    1107 1lvk:A (1.9) BS01 MG ? GO:0003774 ... P08799 9405148
    1108 1m0w:A (1.8) BS01 MG 6.3.2.3 GO:0000287 ... Q08220 12467574
    1109 1m0w:B (1.8) BS01 MG 6.3.2.3 GO:0000287 ... Q08220 12467574
    1110 1m1b:A (2.25) BS01 MG 5.4.2.9 GO:0003824 ... P56839 12162742
    1111 1m1k:1 (3.2) BS02 MG ? GO:0003735 ... P60619 12150912
    1112 1m1k:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12150912
    1113 1m1k:C (3.2) BS02 MG ? GO:0002181 ... P20276 12150912
    1114 1m1k:U (3.2) BS02 MG ? GO:0002181 ... P10972 12150912
    1115 1m1k:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12150912
    1116 1m2o:B (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    1117 1m2o:D (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    1118 1m3u:A (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1119 1m3u:B (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1120 1m3u:C (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1121 1m3u:D (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1122 1m3u:E (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1123 1m3u:F (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1124 1m3u:G (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1125 1m3u:H (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1126 1m3u:I (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1127 1m3u:J (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    1128 1m56:A (2.3) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    1129 1m56:G (2.3) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    1130 1m57:A (3.0) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    1131 1m57:G (3.0) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    1132 1m7b:A (2.0) BS01 MG ? GO:0003924 ... P61587 12163169
    1133 1m90:4 (2.8) BS02 MG ? GO:0000049 ... P32411 12185246
    1134 1m90:U (2.8) BS02 MG ? GO:0002181 ... P10972 12185246
    1135 1m90:Z (2.8) BS02 MG ? GO:0000166 ... P12736 12185246
    1136 1mb3:A (1.41) BS01 MG ? GO:0000160 ... Q9A5I4 12176983
    1137 1mb9:A (2.11) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    1138 1mb9:B (2.11) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    1139 1mbz:A (2.47) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    1140 1mbz:B (2.47) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    1141 1mc1:A (2.16) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    1142 1mc1:B (2.16) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    1143 1mc3:A (2.6) BS01 MG 2.7.7.24 GO:0000271 ... P61887 12171937
    1144 1mc3:B (2.6) BS01 MG 2.7.7.24 GO:0000271 ... P61887 12171937
    1145 1mcz:A (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1146 1mcz:A (2.8) BS02 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1147 1mcz:B (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1148 1mcz:B (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1149 1mcz:C (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1150 1mcz:C (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1151 1mcz:D (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1152 1mcz:D (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1153 1mcz:E (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1154 1mcz:F (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1155 1mcz:F (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1156 1mcz:G (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1157 1mcz:G (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1158 1mcz:H (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1159 1mcz:I (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1160 1mcz:I (2.8) BS02 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1161 1mcz:J (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1162 1mcz:J (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1163 1mcz:K (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1164 1mcz:K (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1165 1mcz:L (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1166 1mcz:L (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1167 1mcz:M (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1168 1mcz:N (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1169 1mcz:O (2.8) BS01 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1170 1mcz:P (2.8) BS03 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1171 1mcz:P (2.8) BS04 MG 4.1.1.7 GO:0000287 ... P20906 12590569
    1172 1mdl:A (1.85) BS01 MG 5.1.2.2 GO:0000287 ... P11444 7893690
    1173 1mdr:A (2.1) BS01 MG 5.1.2.2 GO:0000287 ... P11444 8292591
    1174 1mez:A (2.4) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12186864
    1175 1mf0:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12186864
    1176 1mfr:A (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1177 1mfr:A (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1178 1mfr:B (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1179 1mfr:B (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1180 1mfr:C (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1181 1mfr:C (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1182 1mfr:D (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1183 1mfr:D (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1184 1mfr:E (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1185 1mfr:E (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1186 1mfr:F (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1187 1mfr:F (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1188 1mfr:G (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1189 1mfr:G (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1190 1mfr:H (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1191 1mfr:H (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1192 1mfr:I (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1193 1mfr:I (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1194 1mfr:J (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1195 1mfr:J (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1196 1mfr:K (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1197 1mfr:K (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1198 1mfr:L (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1199 1mfr:L (2.8) BS02 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    1200 1mfr:M (2.8) BS01 MG 1.16.3.1 GO:0004322 ... P07798 10439069
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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