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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 4ffr:A (1.8) BS04 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11402 4ffr:A (1.8) BS05 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11403 4ffr:A (1.8) BS06 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11404 4fh5:A (2.3) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A O13833 22885303
    11405 4fhv:A (2.1) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A O13833 22885303
    11406 4fhw:A (2.5) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A O13833 22885303
    11407 4fhx:A (2.7) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A O13833 22885303
    11408 4fhy:A (2.7) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A O13833 22885303
    11409 4fi1:A (2.09) BS01 MG 2.7.11.1 GO:0000028 ... P15790 N/A
    11410 4fi1:A (2.09) BS02 MG 2.7.11.1 GO:0000028 ... P15790 N/A
    11411 4fi3:C (3.466) BS02 MG 7.6.2.8 GO:0005515 ... P06611 23000901
    11412 4fi3:D (3.466) BS03 MG 7.6.2.8 GO:0005515 ... P06611 23000901
    11413 4fi4:A (2.0) BS01 MG 4.2.1.8 GO:0000287 ... B0T0B1 N/A
    11414 4fi4:B (2.0) BS01 MG 4.2.1.8 GO:0000287 ... B0T0B1 N/A
    11415 4fi4:C (2.0) BS01 MG 4.2.1.8 GO:0000287 ... B0T0B1 N/A
    11416 4fk1:C (2.404) BS02 MG ? GO:0000166 ... A0A6L8PLA6 N/A
    11417 4fk9:A (1.06) BS01 MG 3.2.1.4 GO:0000272 ... G2NHM6 24710170
    11418 4fk9:A (1.06) BS02 MG 3.2.1.4 GO:0000272 ... G2NHM6 24710170
    11419 4fl2:A (2.19) BS01 MG 2.7.10.2 GO:0001525 ... P43405 23154170
    11420 4fl3:A (1.9) BS02 MG 2.7.10.2 GO:0001525 ... P43405 23154170
    11421 4fl5:A (1.9) BS02 MG ? GO:0000122 ... P31947 26103986
    11422 4flt:A (2.9) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11423 4flu:A (3.1) BS03 MG 2.7.7.7 GO:0000166 ... P0CL76 22902479
    11424 4flv:A (2.7) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11425 4flw:A (2.15) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11426 4flx:A (2.9) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11427 4fly:A (2.3) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11428 4flz:A (3.2) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11429 4fm0:A (3.12) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11430 4fm2:A (2.9) BS03 MG 2.7.7.7 GO:0000166 ... P0CL77 22902479
    11431 4fm9:A (2.901) BS03 MG 5.6.2.2 GO:0003677 ... P11388 22841979
    11432 4fma:A (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11433 4fma:A (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11434 4fma:B (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11435 4fma:C (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11436 4fma:C (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11437 4fma:D (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11438 4fma:D (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11439 4fma:E (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11440 4fma:E (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11441 4fma:F (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11442 4fma:F (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11443 4fma:H (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11444 4fma:H (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11445 4fma:I (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11446 4fma:I (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11447 4fma:J (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11448 4fma:J (2.15) BS02 MG ? GO:0004197 ... Q5WMC0 22939626
    11449 4fma:L (2.15) BS01 MG ? GO:0004197 ... Q5WMC0 22939626
    11450 4fmb:B (3.2) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11451 4fmb:D (3.2) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11452 4fmb:F (3.2) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11453 4fmc:B (2.8) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11454 4fmc:D (2.8) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11455 4fmc:F (2.8) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11456 4fmd:B (3.05) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11457 4fmd:D (3.05) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11458 4fmd:F (3.05) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11459 4fme:B (4.1) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11460 4fme:C (4.1) BS02 MG 3.6.5.2 GO:0001726 ... P62330 22939626
    11461 4fme:E (4.1) BS03 MG 3.6.5.2 GO:0003924 ... P62820 22939626
    11462 4fme:F (4.1) BS02 MG 3.6.5.2 GO:0001726 ... P62330 22939626
    11463 4fmm:B (2.34) BS01 MG ? GO:0005737 ... P53860 23519406
    11464 4fmm:B (2.34) BS02 MG ? GO:0005737 ... P53860 23519406
    11465 4fmo:A (3.04) BS02 MG ? GO:0006298 ... P38920 23435383
    11466 4fo6:A (2.007) BS06 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 22584622
    11467 4fp1:A (1.68) BS01 MG 5.1.2.2 GO:0000287 ... P11444 24472022
    11468 4fp1:B (1.68) BS01 MG 5.1.2.2 GO:0000287 ... P11444 24472022
    11469 4fpp:A (2.2) BS01 MG ? N/A Q9A2T6 22949187
    11470 4fr3:A (1.9) BS03 MG ? GO:0000122 ... P31947 23601647
    11471 4fs1:A (2.5) BS03 MG 2.7.7.7 GO:0003684 ... Q9UNA4 22910910
    11472 4fs1:A (2.5) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 22910910
    11473 4fs1:A (2.5) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 22910910
    11474 4fs2:A (2.05) BS03 MG 2.7.7.7 GO:0003684 ... Q9UNA4 22910910
    11475 4fs2:A (2.05) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 22910910
    11476 4fs2:A (2.05) BS06 MG 2.7.7.7 GO:0003684 ... Q9UNA4 22910910
    11477 4fva:A (2.07) BS01 MG 3.1.4.- GO:0003824 ... Q9XWG3 23104058
    11478 4fva:B (2.07) BS01 MG 3.1.4.- GO:0003824 ... Q9XWG3 23104058
    11479 4fva:C (2.07) BS01 MG 3.1.4.- GO:0003824 ... Q9XWG3 23104058
    11480 4fva:D (2.07) BS01 MG 3.1.4.- GO:0003824 ... Q9XWG3 23104058
    11481 4fvu:A (2.91) BS04 MG 3.1.13.- N/A P13699 22937163
    11482 4fwi:B (2.892) BS03 MG 7.4.2.9 GO:0000166 ... Q8RDH4 23385461
    11483 4fxf:A (2.55) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 23530218
    11484 4fxf:B (2.55) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 23530218
    11485 4fxf:C (2.55) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 23530218
    11486 4fxf:D (2.55) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 23530218
    11487 4fyp:A (1.8) BS01 MG ? GO:0003993 ... O49195 23166664
    11488 4fyp:B (1.8) BS01 MG ? GO:0003993 ... O49195 23166664
    11489 4g0n:A (2.45) BS03 MG 3.6.5.2 GO:0003924 ... P01112 25684575
    11490 4g0u:A (2.7) BS04 MG 5.6.2.2 GO:0003677 ... Q02880 24038465
    11491 4g0u:B (2.7) BS05 MG 5.6.2.2 GO:0003677 ... Q02880 24038465
    11492 4g0v:A (2.548) BS05 MG 5.6.2.2 GO:0003677 ... Q02880 24038465
    11493 4g0v:B (2.548) BS04 MG 5.6.2.2 GO:0003677 ... Q02880 24038465
    11494 4g0w:A (2.696) BS04 MG 5.6.2.2 GO:0003677 ... Q02880 24038465
    11495 4g0w:B (2.696) BS04 MG 5.6.2.2 GO:0003677 ... Q02880 24038465
    11496 4g1n:A (2.3) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 22999886
    11497 4g1n:B (2.3) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 22999886
    11498 4g1n:C (2.3) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 22999886
    11499 4g1n:D (2.3) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 22999886
    11500 4g1q:A (1.51) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 23422558
    11501 4g3d:A (2.9) BS01 MG 2.7.11.25 GO:0004672 ... Q99558 22921830
    11502 4g3d:D (2.9) BS01 MG 2.7.11.25 GO:0004672 ... Q99558 22921830
    11503 4g3x:A (3.25) BS02 MG 3.6.5.2 GO:0003924 ... P01112 25684575
    11504 4g4s:A (2.49) BS01 MG 3.4.25.1 GO:0000502 ... P21243 22930756
    11505 4g4s:H (2.49) BS01 MG 3.4.25.1 GO:0000502 ... P38624 22930756
    11506 4g4s:I (2.49) BS01 MG 3.4.25.1 GO:0004298 ... P25043 22930756
    11507 4g4s:J (2.49) BS01 MG 3.4.25.1 GO:0000502 ... P25451 22930756
    11508 4g4s:J (2.49) BS02 MG 3.4.25.1 GO:0000502 ... P25451 22930756
    11509 4g4s:L (2.49) BS02 MG 3.4.25.1 GO:0004298 ... P30656 22930756
    11510 4g4s:M (2.49) BS02 MG 3.4.25.1 GO:0000502 ... P23724 22930756
    11511 4g4s:M (2.49) BS03 MG 3.4.25.1 GO:0000502 ... P23724 22930756
    11512 4g61:A (2.3) BS01 MG N/A N/A N/A 25263816
    11513 4g61:A (2.3) BS02 MG N/A N/A N/A 25263816
    11514 4g61:B (2.3) BS02 MG N/A N/A N/A 25263816
    11515 4g61:B (2.3) BS03 MG N/A N/A N/A 25263816
    11516 4g6g:A (2.39) BS04 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11517 4g6g:A (2.39) BS05 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11518 4g6g:A (2.39) BS06 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11519 4g6g:A (2.39) BS07 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11520 4g6g:B (2.39) BS05 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11521 4g6g:B (2.39) BS06 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11522 4g6g:B (2.39) BS07 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11523 4g6h:A (2.262) BS03 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11524 4g6h:A (2.262) BS04 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11525 4g6h:A (2.262) BS05 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11526 4g6h:B (2.262) BS01 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11527 4g73:A (2.522) BS01 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11528 4g73:A (2.522) BS04 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11529 4g73:A (2.522) BS05 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11530 4g73:A (2.522) BS06 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11531 4g73:A (2.522) BS07 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11532 4g73:B (2.522) BS04 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11533 4g73:B (2.522) BS05 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11534 4g73:B (2.522) BS06 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11535 4g73:B (2.522) BS07 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11536 4g74:A (2.48) BS06 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11537 4g74:A (2.48) BS07 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11538 4g74:A (2.48) BS08 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11539 4g74:B (2.48) BS05 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11540 4g74:B (2.48) BS06 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11541 4g74:B (2.48) BS07 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11542 4g74:B (2.48) BS08 MG 1.6.5.9 GO:0003954 ... P32340 23086143
    11543 4g75:A (1.7) BS01 MG ? GO:0042742 ... Q1W548 22977250
    11544 4g7e:B (2.2) BS01 MG 3.5.1.5 GO:0009039 ... I3PA93 23624166
    11545 4g7f:A (2.4) BS01 MG 4.2.1.11 GO:0000015 ... Q4DZ98 N/A
    11546 4g7h:B (2.9) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 23086998
    11547 4g7h:D (2.9) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11548 4g7h:F (2.9) BS03 MG ? GO:0003677 ... Q5SKW1 23086998
    11549 4g7h:N (2.9) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11550 4g7h:N (2.9) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11551 4g7o:D (2.993) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11552 4g7o:N (2.993) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11553 4g7z:D (3.815) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11554 4g7z:N (3.815) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 23086998
    11555 4g9b:A (1.7) BS01 MG 5.4.2.6 GO:0000287 ... P77366 N/A
    11556 4g9o:A (2.12) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 23409101
    11557 4g9o:B (2.12) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 23409101
    11558 4ga3:A (2.39) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 23610597
    11559 4ga3:A (2.39) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 23610597
    11560 4gad:A (2.35) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 23409101
    11561 4gad:B (2.35) BS01 MG 3.1.3.5
    3.1.3.6
    3.6.1.11    		 GO:0000166 ... P66881 23409101
    11562 4gd3:J (3.3) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    11563 4gd3:K (3.3) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    11564 4gd3:L (3.3) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    11565 4gd3:M (3.3) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 23260654
    11566 4gdz:A (1.95) BS01 MG N/A N/A N/A N/A
    11567 4ged:A (1.84) BS02 MG 1.11.1.5 GO:0004601 ... Q4Q3K2 23100535
    11568 4gfh:F (4.408) BS07 MG 5.6.2.2 GO:0003677 ... P06786 23022727
    11569 4ggh:A (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11570 4ggh:B (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11571 4ggh:C (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11572 4ggh:D (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11573 4gh6:B (2.7) BS04 MG 3.1.4.35 GO:0004114 ... O76083 22985069
    11574 4ghl:A (2.02) BS01 MG ? N/A Q03039 23185024
    11575 4ghl:B (2.02) BS01 MG ? N/A Q03039 23185024
    11576 4ghl:C (2.02) BS01 MG ? N/A Q03039 23185024
    11577 4ghl:C (2.02) BS02 MG ? N/A Q03039 23185024
    11578 4ghl:D (2.02) BS03 MG ? N/A Q03039 23185024
    11579 4gi2:A (3.0) BS01 MG ? GO:0000166 ... C5AP81 N/A
    11580 4gir:A (2.0) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11581 4gir:B (2.0) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11582 4gir:C (2.0) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11583 4gir:D (2.0) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11584 4gis:A (1.8) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11585 4gis:B (1.8) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    11586 4giu:A (1.667) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11587 4giu:A (1.667) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11588 4giu:B (1.667) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11589 4giu:B (1.667) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11590 4gkm:A (1.6683) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11591 4gkm:A (1.6683) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11592 4gkm:B (1.6683) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11593 4gkm:B (1.6683) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    11594 4gme:A (2.0) BS01 MG 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    11595 4gme:C (2.0) BS01 MG 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    11596 4gmj:B (2.7) BS01 MG 3.1.13.4 GO:0000175 ... Q9UIV1 22977175
    11597 4gmj:B (2.7) BS02 MG 3.1.13.4 GO:0000175 ... Q9UIV1 22977175
    11598 4gmj:D (2.7) BS01 MG 3.1.13.4 GO:0000175 ... Q9UIV1 22977175
    11599 4gmj:D (2.7) BS02 MG 3.1.13.4 GO:0000175 ... Q9UIV1 22977175
    11600 4gmj:F (2.7) BS01 MG 3.1.13.4 GO:0000175 ... Q9UIV1 22977175
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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