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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11201 4dv7:I (3.294) BS02 MG ? GO:0000049 ... P80374 N/A
    11202 4dv7:L (3.294) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    11203 4dv7:Q (3.294) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    11204 4dv7:T (3.294) BS02 MG ? GO:0003723 ... P80380 N/A
    11205 4dvg:A (2.604) BS02 MG 3.6.5.2 GO:0003924 ... P31021 23050667
    11206 4dwb:A (2.1) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11207 4dwb:A (2.1) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11208 4dwg:A (2.01) BS01 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11209 4dwg:A (2.01) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11210 4dwo:A (1.5) BS01 MG 3.8.1.- GO:0000287 ... Q8A2F3 N/A
    11211 4dxa:A (1.95) BS02 MG 3.6.5.2 GO:0003924 ... P61224 22577140
    11212 4dxj:A (2.35) BS01 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11213 4dxj:A (2.35) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11214 4dxj:B (2.35) BS01 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11215 4dxj:B (2.35) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11216 4dxj:C (2.35) BS01 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11217 4dxj:C (2.35) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11218 4dxp:A (1.75) BS01 MG N/A GO:0006091 ... N/A 25565105
    11219 4dxp:A (1.75) BS02 MG N/A GO:0006091 ... N/A 25565105
    11220 4dxv:A (1.8) BS01 MG 4.3.3.7 GO:0005737 ... D0CFC3 N/A
    11221 4dyk:A (2.0) BS02 MG ? GO:0004000 ... Q9HZ64 N/A
    11222 4dyk:B (2.0) BS02 MG ? GO:0004000 ... Q9HZ64 N/A
    11223 4dzh:A (1.552) BS01 MG ? GO:0016787 ... Q8P8H1 N/A
    11224 4dzw:A (3.05) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11225 4e1c:A (2.25) BS02 MG 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    11226 4e1e:A (2.65) BS01 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11227 4e1e:A (2.65) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 22715997
    11228 4e2p:A (2.36) BS02 MG 1.13.12.- GO:0004497 ... D9WMQ6 N/A
    11229 4e2p:A (2.36) BS03 MG 1.13.12.- GO:0004497 ... D9WMQ6 N/A
    11230 4e3v:A (1.503) BS04 MG 5.3.1.5 GO:0000287 ... P24300 22868767
    11231 4e4f:A (2.0) BS01 MG 4.2.1.-
    4.2.1.8    		 GO:0000287 ... C6D9S0 N/A
    11232 4e4f:B (2.0) BS01 MG 4.2.1.-
    4.2.1.8    		 GO:0000287 ... C6D9S0 N/A
    11233 4e4f:C (2.0) BS01 MG 4.2.1.-
    4.2.1.8    		 GO:0000287 ... C6D9S0 N/A
    11234 4e4f:D (2.0) BS01 MG 4.2.1.-
    4.2.1.8    		 GO:0000287 ... C6D9S0 N/A
    11235 4e4p:A (1.92) BS01 MG 3.2.1.8 GO:0004553 ... C6CRV0 23000703
    11236 4e4p:A (1.92) BS02 MG 3.2.1.8 GO:0004553 ... C6CRV0 23000703
    11237 4e4p:B (1.92) BS01 MG 3.2.1.8 GO:0004553 ... C6CRV0 23000703
    11238 4e4p:B (1.92) BS02 MG 3.2.1.8 GO:0004553 ... C6CRV0 23000703
    11239 4e5t:A (2.9) BS01 MG N/A N/A N/A N/A
    11240 4e5t:B (2.9) BS01 MG N/A N/A N/A N/A
    11241 4e5t:C (2.9) BS01 MG N/A N/A N/A N/A
    11242 4e5t:D (2.9) BS01 MG N/A N/A N/A N/A
    11243 4e5t:E (2.9) BS01 MG N/A N/A N/A N/A
    11244 4e5t:F (2.9) BS01 MG N/A N/A N/A N/A
    11245 4e5t:G (2.9) BS01 MG N/A N/A N/A N/A
    11246 4e5t:H (2.9) BS01 MG N/A N/A N/A N/A
    11247 4e6m:A (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11248 4e6m:B (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11249 4e6m:C (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11250 4e6m:D (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11251 4e6m:E (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11252 4e6m:F (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11253 4e6m:G (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11254 4e6m:H (1.8) BS01 MG ? GO:0046872 ... Q8ZNH1 N/A
    11255 4e7o:A (2.198) BS01 MG ? GO:0000160 ... Q8DNC2 22521891
    11256 4e7o:B (2.198) BS01 MG ? GO:0000160 ... Q8DNC2 22521891
    11257 4e7p:A (1.892) BS01 MG ? GO:0000160 ... Q8DNC2 22521891
    11258 4e7p:B (1.892) BS01 MG ? GO:0000160 ... Q8DNC2 22521891
    11259 4e7s:A (2.25) BS02 MG ? GO:0003774 ... F1RQI7 22940248
    11260 4e7s:B (2.25) BS02 MG ? GO:0003774 ... F1RQI7 22940248
    11261 4e7z:A (2.3) BS02 MG ? GO:0003774 ... F1RQI7 22940248
    11262 4e7z:B (2.3) BS02 MG ? GO:0003774 ... F1RQI7 22940248
    11263 4e89:A (2.6) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... A1Z651 22724525
    11264 4e8g:A (2.0) BS01 MG 5.1.1.22 GO:0006579 ... A1B198 24520058
    11265 4e8g:B (2.0) BS01 MG 5.1.1.22 GO:0006579 ... A1B198 24520058
    11266 4e9u:A (2.1) BS02 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11267 4ea0:A (2.12) BS01 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11268 4ea0:A (2.12) BS02 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11269 4ea0:A (2.12) BS03 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11270 4ea0:B (2.12) BS01 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11271 4ea0:B (2.12) BS02 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11272 4ea0:B (2.12) BS03 MG 2.5.1.96 GO:0003824 ... A9JQL9 22486710
    11273 4ecr:A (1.892) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11274 4ecr:A (1.892) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11275 4ecs:A (1.951) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11276 4ecs:A (1.951) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11277 4ect:A (1.795) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11278 4ect:A (1.795) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11279 4ecu:A (1.949) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11280 4ecu:A (1.949) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11281 4ecv:A (1.521) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11282 4ecv:A (1.521) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11283 4ecw:A (1.896) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11284 4ecw:A (1.896) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11285 4ecx:A (1.744) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11286 4ecx:A (1.744) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11287 4ed8:A (1.521) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11288 4ed8:A (1.521) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 22785315
    11289 4eed:A (3.92) BS01 MG ? GO:0000287 ... Q9WZ31 23112165
    11290 4eed:A (3.92) BS02 MG ? GO:0000287 ... Q9WZ31 23112165
    11291 4een:A (1.65) BS01 MG ? GO:0046872 ... Q9RTX8 N/A
    11292 4eey:A (2.32) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 22562137
    11293 4efc:A (2.0) BS02 MG 4.3.2.2 GO:0000166 ... Q38EJ2 N/A
    11294 4efc:B (2.0) BS03 MG 4.3.2.2 GO:0000166 ... Q38EJ2 N/A
    11295 4egc:B (1.994) BS01 MG 3.1.3.48 GO:0004725 ... O00167 23435380
    11296 4ekc:A (7.4) BS03 MG 3.6.5.1 GO:0001501 ... P21279 23434405
    11297 4ekc:C (7.4) BS03 MG 3.6.5.1 GO:0001501 ... P21279 23434405
    11298 4ekd:A (2.71) BS05 MG 3.6.5.1 GO:0001501 ... P21279 23434405
    11299 4elt:A (2.2) BS04 MG 2.7.7.7 GO:0001882 ... P19821 22766607
    11300 4elt:A (2.2) BS05 MG 2.7.7.7 GO:0001882 ... P19821 22766607
    11301 4elu:A (1.8) BS04 MG 2.7.7.7 GO:0001882 ... P19821 22766607
    11302 4elu:A (1.8) BS05 MG 2.7.7.7 GO:0001882 ... P19821 22766607
    11303 4elv:A (1.9) BS03 MG 2.7.7.7 GO:0001882 ... P19821 N/A
    11304 4eo7:A (1.449) BS01 MG ? GO:0002755 ... Q99836 23569230
    11305 4eoj:A (1.65) BS02 MG 2.7.11.22 GO:0000082 ... P24941 22921070
    11306 4eoj:B (1.65) BS01 MG ? GO:0016538 ... P20248 22921070
    11307 4eol:B (2.4) BS01 MG ? GO:0016538 ... P20248 22921070
    11308 4eom:A (2.1) BS02 MG 2.7.11.22 GO:0000082 ... P24941 22921070
    11309 4eom:C (2.1) BS02 MG 2.7.11.22 GO:0000082 ... P24941 22921070
    11310 4eom:D (2.1) BS01 MG ? GO:0016538 ... P20248 22921070
    11311 4eon:B (2.4) BS01 MG ? GO:0016538 ... P20248 22921070
    11312 4eon:D (2.4) BS01 MG ? GO:0016538 ... P20248 22921070
    11313 4eoo:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 22921070
    11314 4eoo:B (2.1) BS01 MG ? GO:0016538 ... P20248 22921070
    11315 4eoo:C (2.1) BS02 MG 2.7.11.22 GO:0000082 ... P24941 22921070
    11316 4eop:D (1.99) BS01 MG ? GO:0016538 ... P20248 22921070
    11317 4eoq:A (2.15) BS02 MG 2.7.11.22 GO:0000082 ... P24941 22921070
    11318 4eoq:B (2.15) BS01 MG ? GO:0016538 ... P20248 22921070
    11319 4eoy:C (2.22) BS02 MG ? GO:0000045 ... Q8IJK2 22982544
    11320 4ep4:B (1.28) BS01 MG 3.1.21.10 GO:0000287 ... Q5SJC4 23118486
    11321 4eru:A (2.1) BS01 MG ? GO:0046872 ... A0A0F6B221 N/A
    11322 4eru:A (2.1) BS02 MG ? GO:0046872 ... A0A0F6B221 N/A
    11323 4eru:B (2.1) BS01 MG ? GO:0046872 ... A0A0F6B221 N/A
    11324 4eru:B (2.1) BS02 MG ? GO:0046872 ... A0A0F6B221 N/A
    11325 4euk:A (1.95) BS01 MG 2.7.13.3 GO:0000160 ... Q3S4A7 23132142
    11326 4ev6:A (3.2) BS01 MG ? GO:0000287 ... Q58439 23091000
    11327 4ex4:A (2.1) BS01 MG 2.3.3.9 GO:0000287 ... B8ZSN3 N/A
    11328 4ex4:A (2.1) BS02 MG 2.3.3.9 GO:0000287 ... B8ZSN3 N/A
    11329 4ex4:A (2.1) BS03 MG 2.3.3.9 GO:0000287 ... B8ZSN3 N/A
    11330 4ex4:B (2.1) BS01 MG 2.3.3.9 GO:0000287 ... B8ZSN3 N/A
    11331 4ex4:B (2.1) BS02 MG 2.3.3.9 GO:0000287 ... B8ZSN3 N/A
    11332 4ex4:B (2.1) BS03 MG 2.3.3.9 GO:0000287 ... B8ZSN3 N/A
    11333 4ex6:A (1.25) BS01 MG ? GO:0003824 ... B6SEG4 23297194
    11334 4ex7:A (1.5) BS01 MG ? GO:0003824 ... B6SEG4 23297194
    11335 4eyh:B (2.9) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 23268450
    11336 4eyh:B (2.9) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 23268450
    11337 4eyh:B (2.9) BS06 MG 2.7.7.7 GO:0003684 ... Q9UNA4 23268450
    11338 4eyi:B (2.9) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 23268450
    11339 4eyi:B (2.9) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 23268450
    11340 4f0p:A (2.79) BS01 MG ? GO:0003676 ... A0A0J9X157 22848107
    11341 4f0p:B (2.79) BS01 MG ? GO:0003676 ... A0A0J9X157 22848107
    11342 4f0q:A (2.046) BS01 MG ? GO:0003676 ... A0A0J9X157 22848107
    11343 4f0q:B (2.046) BS01 MG ? GO:0003676 ... A0A0J9X157 22848107
    11344 4f0q:C (2.046) BS01 MG ? GO:0003676 ... A0A0J9X157 22848107
    11345 4f1j:A (1.73) BS01 MG ? N/A Q01502 23317521
    11346 4f1j:A (1.73) BS05 MG ? N/A Q01502 23317521
    11347 4f1j:B (1.73) BS01 MG ? N/A Q01502 23317521
    11348 4f1j:B (1.73) BS04 MG ? N/A Q01502 23317521
    11349 4f1m:A (2.04) BS02 MG 2.7.11.1 GO:0004672 ... Q6XHB2 22689969
    11350 4f1z:A (2.3) BS02 MG ? GO:0005618 ... Q6GDH2 22719251
    11351 4f20:A (2.502) BS02 MG ? GO:0005618 ... Q6GDH2 22719251
    11352 4f24:A (2.509) BS01 MG ? GO:0005618 ... Q6GDH2 22719251
    11353 4f24:A (2.509) BS02 MG ? GO:0005618 ... Q6GDH2 22719251
    11354 4f24:A (2.509) BS03 MG ? GO:0005618 ... Q6GDH2 22719251
    11355 4f24:A (2.509) BS04 MG ? GO:0005618 ... Q6GDH2 22719251
    11356 4f27:A (1.917) BS02 MG ? GO:0005618 ... Q6GDH2 22719251
    11357 4f27:A (1.917) BS03 MG ? GO:0005618 ... Q6GDH2 22719251
    11358 4f38:A (2.8) BS02 MG 3.6.5.2 GO:0000902 ... Q9QUI0 22628549
    11359 4f38:A (2.8) BS03 MG 3.6.5.2 GO:0000902 ... Q9QUI0 22628549
    11360 4f5d:A (3.0) BS02 MG ? GO:0002218 ... Q86WV6 22728659
    11361 4f5d:B (3.0) BS02 MG ? GO:0002218 ... Q86WV6 22728659
    11362 4f5p:A (1.85) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 22959623
    11363 4f6t:A (1.6) BS03 MG ? N/A P84308 22612644
    11364 4f6t:B (1.6) BS03 MG ? GO:0005737 ... P84253 22612644
    11365 4f6v:A (2.3) BS03 MG 2.5.1.96 GO:0003824 ... A9JQL9 22662288
    11366 4f6x:A (1.98) BS02 MG 2.5.1.96 GO:0003824 ... A9JQL9 22662288
    11367 4f71:A (2.27) BS01 MG ? GO:0016787 ... Q8A4Q5 N/A
    11368 4f71:B (2.27) BS01 MG ? GO:0016787 ... Q8A4Q5 N/A
    11369 4f86:B (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11370 4f86:D (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11371 4f86:F (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11372 4f86:G (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11373 4f86:I (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11374 4f86:K (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11375 4f86:L (3.0) BS03 MG 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    11376 4f8b:B (2.502) BS02 MG 1.7.1.13 GO:0005737 ... O31678 22787148
    11377 4f8b:C (2.502) BS02 MG 1.7.1.13 GO:0005737 ... O31678 22787148
    11378 4f8b:D (2.502) BS02 MG 1.7.1.13 GO:0005737 ... O31678 22787148
    11379 4f8b:E (2.502) BS02 MG 1.7.1.13 GO:0005737 ... O31678 22787148
    11380 4f99:A (2.33) BS02 MG 2.7.11.1 GO:0004672 ... O00311 23064647
    11381 4f9a:A (2.17) BS02 MG 2.7.11.1 GO:0004672 ... O00311 23064647
    11382 4f9a:C (2.17) BS02 MG 2.7.11.1 GO:0004672 ... O00311 23064647
    11383 4fe3:A (1.74) BS01 MG 3.1.3.5
    3.1.3.91    		 GO:0000287 ... Q9D020 22925580
    11384 4fee:A (1.13) BS05 MG N/A GO:0000287 ... N/A 22730460
    11385 4fee:B (1.13) BS05 MG N/A GO:0000287 ... N/A 22730460
    11386 4feg:A (1.09) BS03 MG N/A GO:0000287 ... N/A 22730460
    11387 4feg:B (1.09) BS03 MG N/A GO:0000287 ... N/A 22730460
    11388 4ffb:A (2.882) BS01 MG 3.6.5.- GO:0000070 ... P09733 22904013
    11389 4ffd:A (2.31) BS01 MG ? GO:0016311 ... O58216 N/A
    11390 4ffl:A (1.5) BS04 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11391 4ffl:A (1.5) BS05 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11392 4ffm:A (1.91) BS03 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11393 4ffm:A (1.91) BS04 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11394 4ffn:A (2.4) BS03 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11395 4ffn:A (2.4) BS04 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11396 4ffo:A (2.0) BS03 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11397 4ffo:A (2.0) BS04 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11398 4ffp:A (2.0) BS04 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11399 4ffp:A (2.0) BS05 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    11400 4ffr:A (1.8) BS03 MG 6.3.2.59 GO:0005524 ... Q46E79 22985965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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