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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11001 4din:A (3.7) BS02 MG 2.7.11.11 GO:0000122 ... P05132 22797896
    11002 4dkw:A (2.02) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A P26745 22715098
    11003 4dkw:B (2.02) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A P26745 22715098
    11004 4dkw:C (2.02) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A P26745 22715098
    11005 4dkw:D (2.02) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A P26745 22715098
    11006 4dl2:A (2.15) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11007 4dl2:A (2.15) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11008 4dl3:A (2.1) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11009 4dl3:A (2.1) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11010 4dl4:A (2.0) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11011 4dl4:A (2.0) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11012 4dl5:A (2.92) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11013 4dl5:A (2.92) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11014 4dl6:A (2.5) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11015 4dl6:A (2.5) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    11016 4dl8:A (1.698) BS04 MG 3.6.1.23 GO:0004170 ... Q57ZH3 24001052
    11017 4dl8:A (1.698) BS05 MG 3.6.1.23 GO:0004170 ... Q57ZH3 24001052
    11018 4dlc:A (1.759) BS03 MG 3.6.1.23 GO:0004170 ... Q57ZH3 24001052
    11019 4dlc:A (1.759) BS04 MG 3.6.1.23 GO:0004170 ... Q57ZH3 24001052
    11020 4dlc:A (1.759) BS05 MG 3.6.1.23 GO:0004170 ... Q57ZH3 24001052
    11021 4dle:A (2.44) BS03 MG 2.7.7.7 GO:0001882 ... P19821 N/A
    11022 4dlg:A (1.89) BS04 MG 2.7.7.7 GO:0001882 ... P19821 N/A
    11023 4dlg:A (1.89) BS05 MG 2.7.7.7 GO:0001882 ... P19821 N/A
    11024 4dlr:A (1.319) BS02 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11025 4dls:A (1.819) BS02 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11026 4dlt:A (1.699) BS03 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11027 4dlu:A (1.6) BS03 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11028 4dlv:A (1.572) BS02 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11029 4dlv:A (1.572) BS04 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11030 4dlw:A (1.72) BS03 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11031 4dlx:A (1.731) BS02 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11032 4dlx:A (1.731) BS03 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11033 4dly:A (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11034 4dlz:A (1.662) BS02 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11035 4dlz:A (1.662) BS03 MG 3.6.5.2 GO:0003924 ... P01112 22845804
    11036 4dmb:A (1.9) BS01 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    11037 4dmb:A (1.9) BS02 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    11038 4dmb:B (1.9) BS01 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    11039 4dmb:B (1.9) BS02 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    11040 4dmz:A (2.102) BS01 MG ? N/A A0A0H2ZD98 22605337
    11041 4dmz:A (2.102) BS02 MG ? N/A A0A0H2ZD98 22605337
    11042 4dmz:A (2.102) BS03 MG ? N/A A0A0H2ZD98 22605337
    11043 4dmz:A (2.102) BS04 MG ? N/A A0A0H2ZD98 22605337
    11044 4dmz:A (2.102) BS05 MG ? N/A A0A0H2ZD98 22605337
    11045 4dmz:A (2.102) BS06 MG ? N/A A0A0H2ZD98 22605337
    11046 4dmz:A (2.102) BS07 MG ? N/A A0A0H2ZD98 22605337
    11047 4dmz:A (2.102) BS08 MG ? N/A A0A0H2ZD98 22605337
    11048 4dmz:A (2.102) BS09 MG ? N/A A0A0H2ZD98 22605337
    11049 4dmz:A (2.102) BS10 MG ? N/A A0A0H2ZD98 22605337
    11050 4dmz:B (2.102) BS01 MG ? N/A A0A0H2ZD98 22605337
    11051 4dmz:B (2.102) BS02 MG ? N/A A0A0H2ZD98 22605337
    11052 4dn1:A (2.05) BS01 MG ? GO:0000287 ... A9CL63 N/A
    11053 4dn1:B (2.05) BS01 MG ? GO:0000287 ... A9CL63 N/A
    11054 4dn5:A (2.5) BS01 MG 2.7.11.25 GO:0004672 ... Q99558 22718757
    11055 4dn5:B (2.5) BS01 MG 2.7.11.25 GO:0004672 ... Q99558 22718757
    11056 4do9:A (2.05) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 22397499
    11057 4doa:A (2.051) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 22397499
    11058 4dob:A (2.05) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 22397499
    11059 4doc:A (1.949) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 22397499
    11060 4dpg:A (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11061 4dpg:B (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11062 4dpg:C (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11063 4dpg:D (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11064 4dpg:E (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11065 4dpg:F (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11066 4dpg:F (2.844) BS04 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11067 4dpg:H (2.844) BS03 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11068 4dpg:H (2.844) BS04 MG 2.7.7.-
    6.1.1.6    		 GO:0000166 ... Q15046 23159739
    11069 4dpv:Z (2.9) BS02 MG ? GO:0005198 ... P17455 8969301
    11070 4dpv:Z (2.9) BS03 MG ? GO:0005198 ... P17455 8969301
    11071 4dqi:A (1.69) BS03 MG 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    11072 4dqi:D (1.69) BS03 MG 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    11073 4dr1:B (3.6) BS02 MG ? GO:0003735 ... P80371 23322043
    11074 4dr1:B (3.6) BS03 MG ? GO:0003735 ... P80371 23322043
    11075 4dr1:C (3.6) BS02 MG ? GO:0003676 ... P80372 23322043
    11076 4dr1:C (3.6) BS03 MG ? GO:0003676 ... P80372 23322043
    11077 4dr1:C (3.6) BS04 MG ? GO:0003676 ... P80372 23322043
    11078 4dr1:D (3.6) BS02 MG ? GO:0003723 ... P80373 23322043
    11079 4dr1:L (3.6) BS02 MG ? GO:0000049 ... Q5SHN3 23322043
    11080 4dr2:D (3.249) BS02 MG ? GO:0003723 ... P80373 23322043
    11081 4dr2:E (3.249) BS02 MG ? GO:0003723 ... Q5SHQ5 23322043
    11082 4dr2:T (3.249) BS02 MG ? GO:0003723 ... P80380 23322043
    11083 4dr3:B (3.348) BS02 MG ? GO:0003735 ... P80371 23322043
    11084 4dr3:D (3.348) BS02 MG ? GO:0003723 ... P80373 23322043
    11085 4dr3:Q (3.348) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    11086 4dr3:T (3.348) BS02 MG ? GO:0003723 ... P80380 23322043
    11087 4dr4:D (3.969) BS02 MG ? GO:0003723 ... P80373 23322043
    11088 4dr4:K (3.969) BS02 MG ? GO:0003735 ... P80376 23322043
    11089 4dr4:Q (3.969) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    11090 4dr5:D (3.45) BS02 MG ? GO:0003723 ... P80373 23322043
    11091 4dr5:J (3.45) BS02 MG ? GO:0000049 ... Q5SHN7 23322043
    11092 4dr5:Q (3.45) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    11093 4dr6:D (3.3) BS02 MG ? GO:0003723 ... P80373 23322043
    11094 4dr6:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 23322043
    11095 4dr6:J (3.3) BS02 MG ? GO:0000049 ... Q5SHN7 23322043
    11096 4dr6:L (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 23322043
    11097 4dr6:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    11098 4dr7:D (3.75) BS02 MG ? GO:0003723 ... P80373 23322043
    11099 4dr7:J (3.75) BS02 MG ? GO:0000049 ... Q5SHN7 23322043
    11100 4dr7:Q (3.75) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    11101 4dr7:S (3.75) BS02 MG ? GO:0000028 ... Q5SHP2 23322043
    11102 4dsc:A (1.95) BS02 MG ? N/A Q9SSM7 22579247
    11103 4dsc:B (1.95) BS02 MG ? N/A Q9SSM7 22579247
    11104 4dsn:A (2.03) BS01 MG 3.6.5.2 GO:0000139 ... P01116 22431598
    11105 4dsn:A (2.03) BS02 MG 3.6.5.2 GO:0000139 ... P01116 22431598
    11106 4dso:A (1.85) BS02 MG 3.6.5.2 GO:0000139 ... P01116 22431598
    11107 4dst:A (2.3) BS02 MG 3.6.5.2 GO:0000139 ... P01116 22431598
    11108 4dst:A (2.3) BS03 MG 3.6.5.2 GO:0000139 ... P01116 22431598
    11109 4dtf:A (2.12) BS02 MG 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    11110 4dtf:A (2.12) BS03 MG 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    11111 4dth:A (1.78) BS02 MG 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    11112 4dth:A (1.78) BS03 MG 6.3.2.- GO:0007015 ... A0A0H3AIG7 N/A
    11113 4dug:A (3.292) BS01 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    11114 4dug:A (3.292) BS04 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    11115 4dug:C (3.292) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    11116 4dug:E (3.292) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    11117 4dug:F (3.292) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    11118 4duo:A (2.0) BS01 MG 5.3.1.5 GO:0000287 ... P24300 22948921
    11119 4duo:A (2.0) BS02 MG 5.3.1.5 GO:0000287 ... P24300 22948921
    11120 4duv:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11121 4duv:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11122 4duv:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11123 4duv:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11124 4duv:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11125 4duv:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11126 4duv:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11127 4duv:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    11128 4duw:A (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11129 4duw:A (2.2) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11130 4duw:B (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11131 4duw:B (2.2) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11132 4duw:C (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11133 4duw:C (2.2) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11134 4duw:D (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11135 4duw:D (2.2) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11136 4dux:A (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11137 4dux:A (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11138 4dux:B (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11139 4dux:B (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11140 4dux:C (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11141 4dux:C (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11142 4dux:D (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11143 4dux:D (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    11144 4duy:B (3.386) BS02 MG ? GO:0003735 ... P80371 N/A
    11145 4duy:B (3.386) BS03 MG ? GO:0003735 ... P80371 N/A
    11146 4duy:C (3.386) BS02 MG ? GO:0003676 ... P80372 N/A
    11147 4duy:D (3.386) BS02 MG ? GO:0003723 ... P80373 N/A
    11148 4duy:D (3.386) BS03 MG ? GO:0003723 ... P80373 N/A
    11149 4duy:G (3.386) BS02 MG ? GO:0000028 ... P17291 N/A
    11150 4duy:J (3.386) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    11151 4duy:K (3.386) BS02 MG ? GO:0003735 ... P80376 N/A
    11152 4duy:L (3.386) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    11153 4duy:Q (3.386) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    11154 4duz:D (3.651) BS02 MG ? GO:0003723 ... P80373 N/A
    11155 4duz:L (3.651) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    11156 4duz:T (3.651) BS02 MG ? GO:0003723 ... P80380 N/A
    11157 4dv0:B (3.853) BS02 MG ? GO:0003735 ... P80371 N/A
    11158 4dv0:B (3.853) BS03 MG ? GO:0003735 ... P80371 N/A
    11159 4dv0:D (3.853) BS02 MG ? GO:0003723 ... P80373 N/A
    11160 4dv0:L (3.853) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    11161 4dv0:S (3.853) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    11162 4dv1:J (3.849) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    11163 4dv1:K (3.849) BS02 MG ? GO:0003735 ... P80376 N/A
    11164 4dv1:K (3.849) BS03 MG ? GO:0003735 ... P80376 N/A
    11165 4dv1:L (3.849) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    11166 4dv1:N (3.849) BS03 MG ? GO:0003735 ... P0DOY6 N/A
    11167 4dv1:S (3.849) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    11168 4dv1:T (3.849) BS02 MG ? GO:0003723 ... P80380 N/A
    11169 4dv2:B (3.646) BS02 MG ? GO:0003735 ... P80371 N/A
    11170 4dv2:C (3.646) BS02 MG ? GO:0003676 ... P80372 N/A
    11171 4dv2:C (3.646) BS03 MG ? GO:0003676 ... P80372 N/A
    11172 4dv2:D (3.646) BS02 MG ? GO:0003723 ... P80373 N/A
    11173 4dv2:K (3.646) BS02 MG ? GO:0003735 ... P80376 N/A
    11174 4dv2:L (3.646) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    11175 4dv2:Q (3.646) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    11176 4dv2:T (3.646) BS02 MG ? GO:0003723 ... P80380 N/A
    11177 4dv3:J (3.547) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    11178 4dv3:K (3.547) BS02 MG ? GO:0003735 ... P80376 N/A
    11179 4dv3:Q (3.547) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    11180 4dv3:S (3.547) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    11181 4dv3:T (3.547) BS02 MG ? GO:0003723 ... P80380 N/A
    11182 4dv4:B (3.651) BS02 MG ? GO:0003735 ... P80371 N/A
    11183 4dv4:C (3.651) BS02 MG ? GO:0003676 ... P80372 N/A
    11184 4dv4:D (3.651) BS03 MG ? GO:0003723 ... P80373 N/A
    11185 4dv4:D (3.651) BS04 MG ? GO:0003723 ... P80373 N/A
    11186 4dv4:K (3.651) BS02 MG ? GO:0003735 ... P80376 N/A
    11187 4dv4:L (3.651) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    11188 4dv4:Q (3.651) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    11189 4dv5:B (3.683) BS02 MG ? GO:0003735 ... P80371 N/A
    11190 4dv5:L (3.683) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    11191 4dv5:Q (3.683) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    11192 4dv5:T (3.683) BS02 MG ? GO:0003723 ... P80380 N/A
    11193 4dv6:B (3.297) BS02 MG ? GO:0003735 ... P80371 N/A
    11194 4dv6:C (3.297) BS02 MG ? GO:0003676 ... P80372 N/A
    11195 4dv6:D (3.297) BS02 MG ? GO:0003723 ... P80373 N/A
    11196 4dv6:D (3.297) BS03 MG ? GO:0003723 ... P80373 N/A
    11197 4dv6:J (3.297) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    11198 4dv6:K (3.297) BS02 MG ? GO:0003735 ... P80376 N/A
    11199 4dv6:L (3.297) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    11200 4dv7:D (3.294) BS02 MG ? GO:0003723 ... P80373 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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