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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1izc:A (1.7) BS01 MG ? GO:0003824 ... Q9UVD4 12634789
    802 1j1c:A (2.1) BS01 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14993667
    803 1j1c:B (2.1) BS01 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 14993667
    804 1j2b:A (3.3) BS03 MG 2.4.2.48 GO:0002099 ... O58843 12732145
    805 1j2b:B (3.3) BS04 MG 2.4.2.48 GO:0002099 ... O58843 12732145
    806 1j2j:A (1.6) BS01 MG 3.6.5.2 GO:0000139 ... P84078 12679809
    807 1j34:C (1.55) BS01 MG 3.4.21.22 GO:0005509 ... P00741 12695512
    808 1j34:C (1.55) BS06 MG 3.4.21.22 GO:0005509 ... P00741 12695512
    809 1j34:C (1.55) BS07 MG 3.4.21.22 GO:0005509 ... P00741 12695512
    810 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    811 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    812 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    813 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    814 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    815 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    816 1j97:A (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    817 1j97:B (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    818 1j9j:A (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    819 1j9j:B (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    820 1jah:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9102473
    821 1jbv:A (1.95) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    822 1jbw:A (1.85) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    823 1jbz:A (1.5) BS01 MG ? GO:0003674 ... P42212 12501176
    824 1jct:A (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    825 1jct:B (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    826 1jd2:G (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11493007
    827 1jd2:H (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 11493007
    828 1jd2:I (3.0) BS02 MG 3.4.99.46 GO:0000502 ... P25451 11493007
    829 1jd2:K (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11493007
    830 1jd2:L (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11493007
    831 1jd2:N (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11493007
    832 1jdf:A (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    833 1jdf:B (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    834 1jdf:C (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    835 1jdf:D (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    836 1jec:A (2.5) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    837 1jed:A (2.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    838 1jed:B (2.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    839 1jee:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    840 1jee:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    841 1jfg:B (2.5) BS01 MG 4.2.3.6 GO:0016106 ... P13513 11698643
    842 1jfg:B (2.5) BS02 MG 4.2.3.6 GO:0016106 ... P13513 11698643
    843 1jgt:A (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    844 1jgt:B (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    845 1jj2:2 (2.4) BS02 MG ? GO:0000049 ... P32411 11483524
    846 1jj2:A (2.4) BS02 MG ? GO:0002181 ... P20276 11483524
    847 1jj2:S (2.4) BS02 MG ? GO:0002181 ... P10972 11483524
    848 1jj2:X (2.4) BS02 MG ? GO:0000166 ... P12736 11483524
    849 1jkk:A (2.4) BS01 MG 2.7.11.1 GO:0004672 ... P53355 11573098
    850 1jms:A (2.36) BS01 MG 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 11823435
    851 1jp4:A (1.69) BS02 MG 3.1.3.57
    3.1.3.7    		 GO:0000287 ... Q9Z1N4 11812139
    852 1jp4:A (1.69) BS03 MG 3.1.3.57
    3.1.3.7    		 GO:0000287 ... Q9Z1N4 11812139
    853 1jpm:A (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    854 1jpm:B (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    855 1jpm:C (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    856 1jpm:D (2.25) BS01 MG 5.1.1.20 GO:0016853 ... O34508 11747448
    857 1jqv:A (2.1) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    858 1jqv:B (2.1) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    859 1jqx:A (1.7) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    860 1jqx:B (1.7) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    861 1jr4:A (2.63) BS01 MG 2.1.1.6 GO:0000287 ... P22734 12404486
    862 1jsc:A (2.6) BS01 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    863 1jsc:B (2.6) BS02 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    864 1jub:A (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    865 1jub:B (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    866 1jue:A (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    867 1jue:B (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    868 1juy:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    869 1jwy:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464    		 11689422
    870 1jx2:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464    		 11689422
    871 1jx4:A (1.7) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    872 1jxl:A (2.1) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    873 1jxl:A (2.1) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    874 1jxl:A (2.1) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    875 1jyl:A (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    876 1jyl:B (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    877 1jyl:C (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    878 1jyl:D (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    879 1jyn:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    880 1jyn:A (1.8) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    881 1jyn:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    882 1jyn:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    883 1jyn:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    884 1jyn:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    885 1jyn:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    886 1jyn:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    887 1jyv:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    888 1jyv:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    889 1jyv:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    890 1jyv:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    891 1jyv:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    892 1jyv:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    893 1jyv:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    894 1jyv:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    895 1jyw:A (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    896 1jyw:A (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    897 1jyw:B (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    898 1jyw:B (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    899 1jyw:C (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    900 1jyw:C (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    901 1jyw:D (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    902 1jyw:D (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    903 1jyx:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    904 1jyx:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    905 1jyx:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    906 1jyx:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    907 1jyx:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    908 1jyx:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    909 1jyx:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    910 1jyx:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    911 1jz2:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    912 1jz2:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    913 1jz2:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    914 1jz2:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    915 1jz2:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    916 1jz2:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    917 1jz2:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    918 1jz2:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    919 1jz3:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    920 1jz3:A (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    921 1jz3:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    922 1jz3:B (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    923 1jz3:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    924 1jz3:C (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    925 1jz3:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    926 1jz3:D (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    927 1jz4:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    928 1jz4:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    929 1jz4:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    930 1jz4:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    931 1jz4:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    932 1jz4:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    933 1jz4:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    934 1jz4:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    935 1jz5:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    936 1jz5:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    937 1jz5:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    938 1jz5:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    939 1jz5:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    940 1jz5:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    941 1jz5:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    942 1jz5:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    943 1jz6:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    944 1jz6:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    945 1jz6:A (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    946 1jz6:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    947 1jz6:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    948 1jz6:B (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    949 1jz6:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    950 1jz6:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    951 1jz6:C (2.1) BS06 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    952 1jz6:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    953 1jz6:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    954 1jz7:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    955 1jz7:A (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    956 1jz7:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    957 1jz7:B (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    958 1jz7:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    959 1jz7:C (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    960 1jz7:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    961 1jz7:D (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    962 1jz8:A (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    963 1jz8:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    964 1jz8:B (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    965 1jz8:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    966 1jz8:C (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    967 1jz8:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    968 1jz8:D (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    969 1jz8:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    970 1k4i:A (0.98) BS03 MG 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    971 1k5d:A (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    972 1k5d:D (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    973 1k5d:G (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    974 1k5d:J (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    975 1k5g:A (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    976 1k5g:D (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    977 1k5g:G (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    978 1k5g:J (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    979 1k68:A (1.9) BS01 MG ? GO:0000160 ... Q8RTN0 15240481
    980 1k68:B (1.9) BS01 MG ? GO:0000160 ... Q8RTN0 15240481
    981 1k6d:B (1.9) BS01 MG 2.8.3.8 GO:0005737 ... P76458 12454473
    982 1k73:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    983 1k73:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    984 1k73:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    985 1k73:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    986 1k77:A (1.63) BS01 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    987 1k77:A (1.63) BS02 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    988 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    989 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    990 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    991 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    992 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    993 1k9m:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    994 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    995 1k9m:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    996 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    997 1k9y:A (1.9) BS01 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    998 1k9y:A (1.9) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    999 1ka1:A (1.3) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    1000 1ka2:A (2.2) BS01 MG 3.4.17.19 GO:0004180 ... Q8U3L0 11839307
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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