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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8801 3q4d:F (3.0) BS01 MG 5.1.1.- GO:0000287 ... Q11T61 22392983
    8802 3q4d:G (3.0) BS01 MG 5.1.1.- GO:0000287 ... Q11T61 22392983
    8803 3q4d:H (3.0) BS01 MG 5.1.1.- GO:0000287 ... Q11T61 22392983
    8804 3q4d:I (3.0) BS01 MG 5.1.1.- GO:0000287 ... Q11T61 22392983
    8805 3q4o:A (1.34) BS01 MG ? N/A Q58164 21604308
    8806 3q5e:A (3.013) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 21220294
    8807 3q5e:G (3.013) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 21220294
    8808 3q5v:A (1.29) BS01 MG 3.6.1.1 GO:0000287 ... H2L2L6 N/A
    8809 3q5v:A (1.29) BS02 MG 3.6.1.1 GO:0000287 ... H2L2L6 N/A
    8810 3q5v:B (1.29) BS01 MG 3.6.1.1 GO:0000287 ... H2L2L6 N/A
    8811 3q5v:B (1.29) BS02 MG 3.6.1.1 GO:0000287 ... H2L2L6 N/A
    8812 3q6j:A (1.92) BS04 MG 1.8.1.5 GO:0003955 ... Q56839 21192936
    8813 3q6j:B (1.92) BS05 MG 1.8.1.5 GO:0003955 ... Q56839 21192936
    8814 3q72:B (1.655) BS02 MG ? GO:0003924 ... P55042 21903096
    8815 3q7e:A (2.2) BS02 MG 2.1.1.319 GO:0001701 ... Q63009 21697082
    8816 3q7p:A (2.5) BS02 MG ? GO:0003924 ... P55042 21903096
    8817 3q7p:B (2.5) BS02 MG ? GO:0003924 ... P55042 21903096
    8818 3q7q:A (2.3) BS02 MG ? GO:0003924 ... P55042 21903096
    8819 3q7q:B (2.3) BS02 MG ? GO:0003924 ... P55042 21903096
    8820 3q8p:B (1.95) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 21300901
    8821 3q8p:B (1.95) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 21300901
    8822 3q8q:B (2.031) BS03 MG 2.7.7.7 GO:0003684 ... Q9UNA4 21300901
    8823 3q8q:B (2.031) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 21300901
    8824 3q8r:B (2.45) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 21300901
    8825 3q8r:B (2.45) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 21300901
    8826 3q8s:B (2.09) BS03 MG 2.7.7.7 GO:0003684 ... Q9UNA4 N/A
    8827 3q8s:B (2.09) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 N/A
    8828 3q8u:F (2.22) BS02 MG 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    8829 3qal:E (1.7) BS03 MG 2.7.11.11 GO:0000122 ... P05132 22138346
    8830 3qam:E (1.92) BS03 MG 2.7.11.11 GO:0000122 ... P05132 22138346
    8831 3qbm:A (1.8) BS01 MG ? GO:0003677 ... A9WFT0 N/A
    8832 3qbm:B (1.8) BS01 MG ? GO:0003677 ... A9WFT0 N/A
    8833 3qbt:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P61006 21378754
    8834 3qbt:C (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P61006 21378754
    8835 3qbt:E (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P61006 21378754
    8836 3qbt:G (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P61006 21378754
    8837 3qc9:B (2.7) BS02 MG 2.7.11.14 GO:0001750 ... P28327 21265573
    8838 3qe0:A (3.0) BS02 MG 3.6.5.1 GO:0000287 ... P63096 22383884
    8839 3qe0:C (3.0) BS01 MG 3.6.5.1 GO:0000287 ... P63096 22383884
    8840 3qe5:A (2.5) BS04 MG ? N/A P11657 21505225
    8841 3qe6:A (2.6) BS01 MG ? N/A Q99JB8 22573331
    8842 3qe6:B (2.6) BS01 MG ? N/A Q99JB8 22573331
    8843 3qf4:A (2.9) BS02 MG ? GO:0005515 ... Q9WYC3 22447242
    8844 3qf7:A (1.9) BS02 MG 3.6.-.- GO:0006302 ... Q9X1X1 21458667
    8845 3qf7:B (1.9) BS03 MG 3.6.-.- GO:0006302 ... Q9X1X1 21458667
    8846 3qfv:B (2.65) BS02 MG 2.7.11.1 GO:0004672 ... Q9Y5S2 21949762
    8847 3qhr:A (2.17) BS03 MG 2.7.11.22 GO:0000082 ... P24941 21565702
    8848 3qhr:C (2.17) BS03 MG 2.7.11.22 GO:0000082 ... P24941 21565702
    8849 3qhw:A (1.91) BS03 MG 2.7.11.22 GO:0000082 ... P24941 21565702
    8850 3qhw:C (1.91) BS03 MG 2.7.11.22 GO:0000082 ... P24941 21565702
    8851 3qke:A (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8852 3qke:B (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8853 3qke:C (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8854 3qke:D (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8855 3qke:E (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8856 3qke:F (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8857 3qke:G (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8858 3qke:H (1.55) BS02 MG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    8859 3qkt:A (1.9) BS02 MG 3.6.-.- GO:0005524 ... P58301 21441914
    8860 3qkt:B (1.9) BS03 MG 3.6.-.- GO:0005524 ... P58301 21441914
    8861 3qkt:C (1.9) BS02 MG 3.6.-.- GO:0005524 ... P58301 21441914
    8862 3qkt:D (1.9) BS03 MG 3.6.-.- GO:0005524 ... P58301 21441914
    8863 3qku:A (3.3) BS02 MG 3.6.-.- GO:0005524 ... P58301 21441914
    8864 3qku:B (3.3) BS02 MG 3.6.-.- GO:0005524 ... P58301 21441914
    8865 3qn3:A (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    8866 3qn3:B (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    8867 3qn3:C (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    8868 3qn3:D (2.13) BS01 MG 4.2.1.11 GO:0000015 ... P42448 N/A
    8869 3qnm:A (1.7) BS01 MG ? GO:0008253 ... Q8A5G8 N/A
    8870 3qo8:A (2.0) BS02 MG 6.1.1.11 GO:0000166 ... Q9HGT6 21825144
    8871 3qof:C (2.802) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 21368113
    8872 3qof:D (2.802) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 21368113
    8873 3qpe:A (1.796) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8874 3qpe:A (1.796) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8875 3qpe:B (1.796) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8876 3qpe:B (1.796) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8877 3qpe:C (1.796) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8878 3qpe:C (1.796) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8879 3qpe:D (1.796) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8880 3qpe:D (1.796) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8881 3qqs:A (1.97) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8882 3qqs:A (1.97) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8883 3qqs:B (1.97) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8884 3qqs:B (1.97) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8885 3qqs:C (1.97) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8886 3qqv:A (2.0) BS01 MG 2.5.1.1 GO:0004161 ... Q8NNM1 23493556
    8887 3qqv:A (2.0) BS02 MG 2.5.1.1 GO:0004161 ... Q8NNM1 23493556
    8888 3qqy:A (2.401) BS03 MG ? GO:0004519 ... Q4VWW5 21784983
    8889 3qrf:F (2.8) BS03 MG ? GO:0003700 ... Q9BZS1 21458306
    8890 3qrf:G (2.8) BS03 MG ? GO:0003700 ... Q9BZS1 21458306
    8891 3qrf:H (2.8) BS01 MG ? GO:0003700 ... Q9BZS1 21458306
    8892 3qrf:I (2.8) BS01 MG ? GO:0003700 ... Q9BZS1 21458306
    8893 3qs8:A (2.0) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8894 3qs8:A (2.0) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8895 3qs8:B (2.0) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8896 3qs8:B (2.0) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8897 3qs8:C (2.0) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8898 3qs8:C (2.0) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8899 3qs8:D (2.0) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8900 3qs8:D (2.0) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8901 3qsa:A (2.18) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    8902 3qsa:A (2.18) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    8903 3qsa:B (2.18) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    8904 3qsa:B (2.18) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    8905 3qt1:A (4.3) BS01 MG 2.7.7.6 GO:0000428 ... P04050 21454497
    8906 3qtp:A (1.9) BS02 MG 4.2.1.11 GO:0000015 ... P51555 21697600
    8907 3qtp:B (1.9) BS02 MG 4.2.1.11 GO:0000015 ... P51555 21697600
    8908 3qtt:A (2.599) BS03 MG 6.3.2.1 GO:0003824 ... Q5NF57 N/A
    8909 3qu2:A (1.95) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8910 3qu2:B (1.95) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8911 3qu2:C (1.95) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8912 3qu2:D (1.95) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8913 3qu4:A (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8914 3qu4:B (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8915 3qu4:C (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8916 3qu4:D (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8917 3qu4:E (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8918 3qu4:F (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8919 3qu4:G (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8920 3qu4:H (2.1) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8921 3qu9:A (1.9) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8922 3quq:A (1.65) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8923 3quq:A (1.65) BS02 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8924 3qut:A (1.5) BS01 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8925 3qut:A (1.5) BS02 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8926 3qvq:A (1.602) BS02 MG N/A GO:0006629 ... N/A N/A
    8927 3qvq:B (1.602) BS02 MG N/A GO:0006629 ... N/A N/A
    8928 3qvq:B (1.602) BS03 MG N/A GO:0006629 ... N/A N/A
    8929 3qvq:C (1.602) BS02 MG N/A GO:0006629 ... N/A N/A
    8930 3qvq:C (1.602) BS03 MG N/A GO:0006629 ... N/A N/A
    8931 3qvq:D (1.602) BS02 MG N/A GO:0006629 ... N/A N/A
    8932 3qvq:D (1.602) BS03 MG N/A GO:0006629 ... N/A N/A
    8933 3qx3:A (2.162) BS05 MG 5.6.2.2 GO:0003677 ... Q02880 21778401
    8934 3qx3:B (2.162) BS04 MG 5.6.2.2 GO:0003677 ... Q02880 21778401
    8935 3qx7:A (2.0) BS03 MG 3.6.1.1 GO:0008801 ... Q8A5V9 21894910
    8936 3qxc:A (1.34) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    8937 3qxh:A (1.36) BS03 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    8938 3qxj:A (1.38) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    8939 3qxs:A (1.35) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    8940 3qxx:A (1.36) BS03 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    8941 3qy0:A (1.6) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    8942 3qy6:A (1.8) BS03 MG 3.1.3.48 GO:0004721 ... P96717 21605684
    8943 3qy7:A (1.62) BS03 MG 3.1.3.48 GO:0004721 ... P96717 21605684
    8944 3qy8:A (2.0) BS03 MG 3.1.3.48 GO:0000271 ... Q9AHD4 21605684
    8945 3qyy:A (1.9) BS02 MG 2.7.7.65 N/A Q8P559 22120736 Manual survey: Ki=6.54uM (22120736)
    8946 3qyy:B (1.9) BS03 MG 2.7.7.65 N/A Q8P559 22120736 Manual survey: Ki=6.54uM (22120736)
    8947 3r09:A (2.2) BS01 MG ? GO:0016787 ... Q4K5L5 N/A
    8948 3r0u:A (1.9) BS01 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    8949 3r0u:A (1.9) BS02 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    8950 3r10:A (2.0) BS01 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    8951 3r11:A (2.0) BS01 MG 5.1.1.- GO:0000287 ... B0TZW0 22392983
    8952 3r1m:A (1.5) BS01 MG 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 21983966
    8953 3r1m:A (1.5) BS02 MG 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 21983966
    8954 3r1m:A (1.5) BS03 MG 3.1.3.11
    4.1.2.13    		 GO:0000287 ... F9VMT6 21983966
    8955 3r25:A (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8956 3r25:B (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8957 3r25:C (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8958 3r25:D (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8959 3r25:E (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8960 3r25:F (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8961 3r25:G (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8962 3r25:H (1.603) BS01 MG ? GO:0000287 ... A5KUH4 N/A
    8963 3r2u:B (2.1) BS02 MG ? GO:0006749 ... A0A0H2X0Y8 N/A
    8964 3r2u:D (2.1) BS02 MG ? GO:0006749 ... A0A0H2X0Y8 N/A
    8965 3r3s:A (1.25) BS02 MG ? GO:0000166 ... Q8ZM09 N/A
    8966 3r3s:B (1.25) BS02 MG ? GO:0000166 ... Q8ZM09 N/A
    8967 3r3s:C (1.25) BS02 MG ? GO:0000166 ... Q8ZM09 N/A
    8968 3r3s:D (1.25) BS02 MG ? GO:0000166 ... Q8ZM09 N/A
    8969 3r4c:A (1.82) BS01 MG ? GO:0000287 ... Q8A759 21989931
    8970 3r5f:A (2.07) BS02 MG 6.3.2.4 GO:0003824 ... Q5H614 N/A
    8971 3r5h:B (2.2) BS03 MG N/A GO:0004638 ... N/A 25372694
    8972 3r5x:C (2.0) BS03 MG 6.3.2.4 GO:0003824 ... Q81Q29 N/A
    8973 3r6c:A (1.83) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8974 3r6c:A (1.83) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8975 3r6c:B (1.83) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8976 3r6c:B (1.83) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8977 3r6o:A (1.95) BS01 MG ? GO:0003824 ... B1MJ53 25613812
    8978 3r6t:A (1.2) BS01 MG 2.1.1.6 GO:0000287 ... P22734 22349227
    8979 3r75:A (2.1) BS01 MG 4.1.3.27 GO:0000162 ... Q396C7 21454481
    8980 3r75:B (2.1) BS01 MG 4.1.3.27 GO:0000162 ... Q396C7 21454481
    8981 3r76:A (2.6) BS01 MG 4.1.3.27 GO:0000162 ... Q396C7 21454481
    8982 3r76:B (2.6) BS01 MG 4.1.3.27 GO:0000162 ... Q396C7 21454481
    8983 3r7p:A (2.704) BS06 MG 3.1.21.1 GO:0004519 ... C7SWF3 21784983
    8984 3r7w:A (2.773) BS02 MG 3.6.5.- GO:0000329 ... Q00582 21816923
    8985 3r7w:B (2.773) BS02 MG 3.6.5.- GO:0000329 ... P53290 21816923
    8986 3r7w:C (2.773) BS02 MG 3.6.5.- GO:0000329 ... Q00582 21816923
    8987 3r88:A (1.73) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8988 3r88:A (1.73) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8989 3r88:B (1.73) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8990 3r88:B (1.73) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    8991 3r8f:A (3.366) BS02 MG ? GO:0003677 ... O66659 21964332
    8992 3r8f:B (3.366) BS02 MG ? GO:0003677 ... O66659 21964332
    8993 3r8f:C (3.366) BS02 MG ? GO:0003677 ... O66659 21964332
    8994 3r8f:D (3.366) BS02 MG ? GO:0003677 ... O66659 21964332
    8995 3r9w:A (2.05) BS02 MG ? GO:0000028 ... O67800 21646538
    8996 3r9x:A (2.8) BS02 MG ? GO:0000028 ... O67800 21646538
    8997 3rab:A (2.0) BS01 MG ? GO:0003924 ... P63012 10196122
    8998 3rad:A (3.35) BS03 MG 5.6.2.2 GO:0003677 ... P72525 27655731
    8999 3rad:B (3.35) BS03 MG 5.6.2.2 GO:0003677 ... P72525 27655731
    9000 3rad:C (3.35) BS04 MG 5.6.2.2 GO:0003677 ... Q59961 27655731
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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