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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8201 3mv1:4 (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 N/A
    8202 3mwb:B (2.0) BS03 MG 4.2.1.51 GO:0004106 ... A1R118 N/A
    8203 3mwc:A (1.8) BS01 MG 4.2.1.113 GO:0003824 ... C5CFI0 N/A
    8204 3mwe:A (2.2) BS01 MG 2.3.3.8 GO:0046912 ... P53396 20558738
    8205 3mx3:A (2.0) BS01 MG ? GO:0046872 ... Q5LGM6 N/A
    8206 3mx3:B (2.0) BS01 MG ? GO:0046872 ... Q5LGM6 N/A
    8207 3my9:A (2.2) BS01 MG ? GO:0000287 ... A8HTB8 N/A
    8208 3my9:A (2.2) BS02 MG ? GO:0000287 ... A8HTB8 N/A
    8209 3myh:X (2.01) BS01 MG ? GO:0003774 ... P08799 20459085
    8210 3myk:X (1.84) BS02 MG ? GO:0003774 ... P08799 20459085
    8211 3myl:X (2.0) BS01 MG ? GO:0003774 ... P08799 20459085
    8212 3myr:B (2.1) BS03 MG ? GO:0005886 ... D3RV26 20673834
    8213 3myr:D (2.1) BS02 MG ? GO:0005886 ... D3RV26 20673834
    8214 3myr:F (2.1) BS03 MG ? GO:0005886 ... D3RV26 20673834
    8215 3myr:H (2.1) BS03 MG ? GO:0005886 ... D3RV26 20673834
    8216 3n07:A (1.76) BS01 MG 3.1.3.45 GO:0003674 ... Q9KP52 23848398
    8217 3n07:B (1.76) BS01 MG 3.1.3.45 GO:0003674 ... Q9KP52 23848398
    8218 3n07:C (1.76) BS01 MG 3.1.3.45 GO:0003674 ... Q9KP52 23848398
    8219 3n07:D (1.76) BS01 MG 3.1.3.45 GO:0003674 ... Q9KP52 23848398
    8220 3n0g:A (2.8) BS02 MG 4.2.3.27 GO:0000287 ... Q9AR86 20624401
    8221 3n0g:A (2.8) BS03 MG 4.2.3.27 GO:0000287 ... Q9AR86 20624401
    8222 3n0g:B (2.8) BS02 MG 4.2.3.27 GO:0000287 ... Q9AR86 20624401
    8223 3n0g:B (2.8) BS03 MG 4.2.3.27 GO:0000287 ... Q9AR86 20624401
    8224 3n1e:A (1.702) BS01 MG ? GO:0000938 ... Q5SPW0 20615984
    8225 3n1e:B (1.702) BS01 MG ? GO:0000938 ... Q5SPW0 20615984
    8226 3n1g:A (1.9) BS04 MG 3.1.-.- GO:0007267 ... O43323 20519495
    8227 3n23:A (4.6) BS02 MG 7.2.2.13 GO:0000166 ... P05024 21182963
    8228 3n23:C (4.6) BS02 MG 7.2.2.13 GO:0000166 ... P05024 21182963
    8229 3n2g:A (4.0) BS02 MG ? GO:0000226 ... D0VWZ0 20675373
    8230 3n2g:C (4.0) BS02 MG ? GO:0000226 ... D0VWZ0 20675373
    8231 3n2k:A (4.0) BS02 MG ? GO:0000226 ... D0VWZ0 20675373
    8232 3n2k:C (4.0) BS02 MG ? GO:0000226 ... D0VWZ0 20675373
    8233 3n2n:A (1.8) BS01 MG ? N/A Q9H6X2 20585457
    8234 3n2n:B (1.8) BS01 MG ? N/A Q9H6X2 20585457
    8235 3n2n:C (1.8) BS01 MG ? N/A Q9H6X2 20585457
    8236 3n2n:D (1.8) BS01 MG ? N/A Q9H6X2 20585457
    8237 3n2n:E (1.8) BS01 MG ? N/A Q9H6X2 20585457
    8238 3n2n:F (1.8) BS01 MG ? N/A Q9H6X2 20585457
    8239 3n3t:A (2.35) BS02 MG ? N/A Q3SJE6 20691189
    8240 3n3t:A (2.35) BS03 MG ? N/A Q3SJE6 20691189
    8241 3n3t:B (2.35) BS02 MG ? N/A Q3SJE6 20691189
    8242 3n3t:B (2.35) BS03 MG ? N/A Q3SJE6 20691189
    8243 3n45:F (1.88) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197
    8244 3n45:F (1.88) BS04 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197
    8245 3n46:F (2.35) BS03 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197
    8246 3n46:F (2.35) BS04 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197
    8247 3n4f:A (1.88) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8248 3n4f:A (1.88) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8249 3n4f:B (1.88) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8250 3n4f:B (1.88) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8251 3n4f:C (1.88) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8252 3n4f:C (1.88) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8253 3n4f:D (1.88) BS01 MG ? GO:0000287 ... D3EID5 N/A
    8254 3n4f:D (1.88) BS02 MG ? GO:0000287 ... D3EID5 N/A
    8255 3n4p:A (2.15) BS01 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8256 3n4p:B (2.15) BS01 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8257 3n4p:B (2.15) BS02 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8258 3n4p:C (2.15) BS01 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8259 3n4p:D (2.15) BS01 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8260 3n4p:D (2.15) BS02 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8261 3n4q:A (3.2) BS03 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8262 3n4q:B (3.2) BS03 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8263 3n4q:C (3.2) BS03 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8264 3n4q:C (3.2) BS04 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8265 3n4q:D (3.2) BS03 MG 3.1.-.- GO:0051276 ... P16732 20805464
    8266 3n5k:A (2.2) BS01 MG 7.2.2.10 GO:0000166 ... P04191 23400778
    8267 3n5k:B (2.2) BS01 MG 7.2.2.10 GO:0000166 ... P04191 23400778
    8268 3n6h:A (2.3) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    8269 3n6h:B (2.3) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    8270 3n6h:C (2.3) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    8271 3n6h:D (2.3) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    8272 3n6q:D (1.8) BS01 MG 1.1.1.- GO:0006974 ... Q46851 22393408
    8273 3n78:A (2.95) BS03 MG 3.1.21.4 GO:0042802 ... Q9F6L0 21206063
    8274 3n78:B (2.95) BS03 MG 3.1.21.4 GO:0042802 ... Q9F6L0 21206063
    8275 3n7x:A (2.5) BS01 MG ? GO:0046872 ... Q9E2G5 20702621
    8276 3n84:C (2.0) BS02 MG ? N/A P62993 21116482
    8277 3n8b:A (1.9) BS01 MG ? GO:0000977 ... O51076 20976240
    8278 3n8b:B (1.9) BS01 MG ? GO:0000977 ... O51076 20976240
    8279 3n9v:A (2.65) BS01 MG 3.1.3.36 GO:0016791 ... P32019 24704254
    8280 3n9v:B (2.65) BS01 MG 3.1.3.36 GO:0016791 ... P32019 24704254
    8281 3na5:A (1.7) BS01 MG 5.4.2.2 GO:0000287 ... Q8ZQW9 21246636
    8282 3na5:B (1.7) BS01 MG 5.4.2.2 GO:0000287 ... Q8ZQW9 21246636
    8283 3na8:A (1.85) BS01 MG 4.2.1.52 GO:0005829 ... Q9I6R5 N/A
    8284 3na8:B (1.85) BS01 MG 4.2.1.52 GO:0005829 ... Q9I6R5 N/A
    8285 3na8:C (1.85) BS01 MG 4.2.1.52 GO:0005829 ... Q9I6R5 N/A
    8286 3na8:D (1.85) BS01 MG 4.2.1.52 GO:0005829 ... Q9I6R5 N/A
    8287 3nai:A (2.56) BS01 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    8288 3nai:B (2.56) BS01 MG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0003723 ... Q80J95 N/A
    8289 3nam:A (3.1) BS01 MG 7.2.2.10 GO:0000166 ... B6CAM1 20551329
    8290 3nby:F (3.42) BS01 MG 3.6.5.- GO:0003924 ... P62826 20972448
    8291 3nbz:C (2.8) BS02 MG 3.6.5.- GO:0003924 ... P62826 20972448
    8292 3nbz:F (2.8) BS01 MG 3.6.5.- GO:0003924 ... P62826 20972448
    8293 3nc0:C (2.9) BS02 MG 3.6.5.- GO:0003924 ... P62826 20972448
    8294 3nc0:F (2.9) BS02 MG 3.6.5.- GO:0003924 ... P62826 20972448
    8295 3nc1:C (3.35) BS02 MG 3.6.5.- GO:0003924 ... P62826 20972448
    8296 3nc3:A (2.66) BS02 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8297 3nc3:A (2.66) BS03 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8298 3nc5:A (2.9) BS02 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8299 3nc5:A (2.9) BS03 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8300 3nc5:B (2.9) BS02 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8301 3nc7:A (3.3) BS03 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8302 3nc7:B (3.3) BS03 MG 1.14.15.13 GO:0004497 ... O34926 20690619
    8303 3nem:B (1.89) BS02 MG 6.1.1.12 GO:0000166 ... Q52428 9724658
    8304 3nfu:A (1.94) BS01 MG 4.2.1.40 GO:0008872 ... Q1QUN0 N/A
    8305 3nfu:B (1.94) BS01 MG 4.2.1.40 GO:0008872 ... Q1QUN0 N/A
    8306 3ngo:A (2.2) BS02 MG 3.1.13.4 GO:0003824 ... Q96LI5 20628353
    8307 3ngq:A (1.8) BS02 MG 3.1.13.4 GO:0003824 ... Q96LI5 20628353
    8308 3nh1:A (2.107) BS03 MG 3.1.13.- GO:0000175 ... P30014 21317904
    8309 3nh1:B (2.107) BS03 MG 3.1.13.- GO:0000175 ... P30014 21317904
    8310 3nh1:C (2.107) BS03 MG 3.1.13.- GO:0000175 ... P30014 21317904
    8311 3nh1:D (2.107) BS03 MG 3.1.13.- GO:0000175 ... P30014 21317904
    8312 3nhz:B (2.5) BS01 MG ? GO:0000160 ... P9WGM7 20702407
    8313 3nhz:C (2.5) BS01 MG ? GO:0000160 ... P9WGM7 20702407
    8314 3nhz:D (2.5) BS01 MG ? GO:0000160 ... P9WGM7 20702407
    8315 3nid:B (2.3) BS01 MG ? N/A P05106 20679525
    8316 3nid:D (2.3) BS01 MG ? N/A P05106 20679525
    8317 3nif:B (2.4) BS01 MG ? N/A P05106 20679525
    8318 3nif:D (2.4) BS01 MG ? N/A P05106 20679525
    8319 3nig:B (2.25) BS01 MG ? N/A P05106 20679525
    8320 3nig:D (2.25) BS01 MG ? N/A P05106 20679525
    8321 3niw:A (1.9) BS01 MG ? GO:0000287 ... Q8A2F3 N/A
    8322 3niz:A (2.4) BS01 MG 2.7.11.22
    2.7.11.23    		 GO:0004672 ... Q5CRJ8 N/A
    8323 3njl:A (1.75) BS01 MG ? GO:0003674 ... Q8EGA7 22493430
    8324 3nkv:A (1.7) BS02 MG 3.6.5.2 GO:0003924 ... Q9H0U4 20651120
    8325 3nkv:B (1.7) BS02 MG 3.6.5.2 GO:0003924 ... Q9H0U4 20651120
    8326 3nl0:A (2.6) BS03 MG 3.4.22.46
    3.6.1.15    		 GO:0003723 ... Q9QCE4 20865120
    8327 3nl3:A (3.007) BS02 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8328 3nl3:A (3.007) BS03 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8329 3nl3:A (3.007) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8330 3nl3:B (3.007) BS02 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8331 3nl3:C (3.007) BS02 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8332 3nl3:D (3.007) BS02 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8333 3nl3:D (3.007) BS03 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8334 3nl3:E (3.007) BS02 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8335 3nl3:F (3.007) BS02 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8336 3nl5:B (3.3) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8337 3nm1:A (3.211) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8338 3nm1:B (3.211) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8339 3nm1:C (3.211) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8340 3nm1:D (3.211) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8341 3nm1:E (3.211) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8342 3nm1:F (3.211) BS04 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8343 3nm3:A (3.102) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8344 3nm3:B (3.102) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8345 3nm3:C (3.102) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8346 3nm3:D (3.102) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8347 3nm3:E (3.102) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8348 3nm3:F (3.102) BS01 MG 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    8349 3nm7:A (2.2) BS01 MG ? GO:0000977 ... O51076 N/A
    8350 3nmn:B (2.15) BS01 MG 3.1.3.16 GO:0004722 ... P49597 20729862
    8351 3nmn:B (2.15) BS02 MG 3.1.3.16 GO:0004722 ... P49597 20729862
    8352 3nmn:D (2.15) BS01 MG 3.1.3.16 GO:0004722 ... P49597 20729862
    8353 3nmn:D (2.15) BS02 MG 3.1.3.16 GO:0004722 ... P49597 20729862
    8354 3nmt:B (2.56) BS01 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 20729862
    8355 3nmt:B (2.56) BS02 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 20729862
    8356 3nmv:B (2.1) BS01 MG 3.1.3.16 GO:0004722 ... O04719 20729862
    8357 3nmv:B (2.1) BS02 MG 3.1.3.16 GO:0004722 ... O04719 20729862
    8358 3nnn:A (2.2) BS01 MG ? GO:0000160 ... Q9WYN0 20702407
    8359 3nnn:B (2.2) BS01 MG ? GO:0000160 ... Q9WYN0 20702407
    8360 3nns:A (1.9) BS01 MG ? GO:0000160 ... Q9WXY0 20702407
    8361 3nns:B (1.9) BS01 MG ? GO:0000160 ... Q9WXY0 20702407
    8362 3no1:A (2.16) BS01 MG ? GO:0000287 ... A4AFX2 N/A
    8363 3no1:B (2.16) BS01 MG ? GO:0000287 ... A4AFX2 N/A
    8364 3no1:C (2.16) BS01 MG ? GO:0000287 ... A4AFX2 N/A
    8365 3no1:D (2.16) BS01 MG ? GO:0000287 ... A4AFX2 N/A
    8366 3no1:E (2.16) BS01 MG ? GO:0000287 ... A4AFX2 N/A
    8367 3no1:F (2.16) BS01 MG ? GO:0000287 ... A4AFX2 N/A
    8368 3no3:A (1.89) BS01 MG ? GO:0006629 ... A6L916 N/A
    8369 3npr:A (2.0) BS02 MG 2.5.1.96 GO:0003824 ... A9JQL9 21098670
    8370 3nrj:A (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8371 3nrj:B (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8372 3nrj:C (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8373 3nrj:D (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8374 3nrj:E (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8375 3nrj:F (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8376 3nrj:G (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8377 3nrj:H (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8378 3nrj:I (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8379 3nrj:J (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8380 3nrj:K (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8381 3nrj:L (1.9) BS01 MG 3.1.3.45 GO:0009103 ... Q48EB9 N/A
    8382 3nsz:A (1.3) BS01 MG 2.7.11.1 GO:0004672 ... P68400 21093442
    8383 3ntu:A (1.9) BS02 MG ? GO:0000166 ... O73948 22275364
    8384 3nvs:A (1.021) BS04 MG 2.5.1.19 GO:0003824 ... Q9KRB0 N/A
    8385 3nw9:A (1.65) BS01 MG 2.1.1.6 GO:0000287 ... P22734 21538606
    8386 3nwb:A (1.3) BS01 MG 2.1.1.6 GO:0000287 ... P22734 22349227
    8387 3nwe:A (1.5) BS01 MG 2.1.1.6 GO:0000287 ... P22734 22349227
    8388 3nx3:A (1.8) BS01 MG 2.6.1.11 GO:0003992 ... Q9PIR7 N/A
    8389 3nx3:A (1.8) BS02 MG 2.6.1.11 GO:0003992 ... Q9PIR7 N/A
    8390 3nx3:A (1.8) BS03 MG 2.6.1.11 GO:0003992 ... Q9PIR7 N/A
    8391 3nxl:A (1.885) BS01 MG 4.2.1.40 GO:0008872 ... Q39KL8 N/A
    8392 3nxl:B (1.885) BS01 MG 4.2.1.40 GO:0008872 ... Q39KL8 N/A
    8393 3nxl:C (1.885) BS01 MG 4.2.1.40 GO:0008872 ... Q39KL8 N/A
    8394 3nxl:D (1.885) BS01 MG 4.2.1.40 GO:0008872 ... Q39KL8 N/A
    8395 3nz2:C (2.35) BS03 MG ? GO:0005829 ... Q9KLB0 N/A
    8396 3nzg:A (2.0) BS01 MG N/A N/A N/A N/A
    8397 3nzg:B (2.0) BS01 MG N/A N/A N/A N/A
    8398 3nzg:C (2.0) BS01 MG N/A N/A N/A N/A
    8399 3nzg:D (2.0) BS01 MG N/A N/A N/A N/A
    8400 3o2e:A (1.95) BS02 MG ? GO:0005634 ... A7ATL3 21359836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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