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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 3hxy:A (2.27) BS05 MG 6.1.1.7 GO:0000166 ... P00957 20010690
    7402 3hy3:A (1.8) BS02 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7403 3hy3:A (1.8) BS03 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7404 3hy3:A (1.8) BS04 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7405 3hy3:A (1.8) BS05 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7406 3hy4:A (2.795) BS01 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7407 3hy6:A (2.1) BS01 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7408 3hy6:A (2.1) BS02 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7409 3hy6:A (2.1) BS04 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7410 3hy6:A (2.1) BS05 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7411 3hy6:A (2.1) BS07 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7412 3hy6:A (2.1) BS08 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7413 3hy6:A (2.1) BS09 MG 6.3.3.2 GO:0005515 ... P49914 19738041
    7414 3hyc:A (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7415 3hyc:B (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7416 3hyc:C (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7417 3hyc:D (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7418 3hyc:E (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7419 3hyc:F (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7420 3hyc:G (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7421 3hyc:H (3.06) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7422 3hyk:A (2.31) BS01 MG 2.7.8.7 GO:0000287 ... Q81JG3 22993090
    7423 3hyk:B (2.31) BS02 MG 2.7.8.7 GO:0000287 ... Q81JG3 22993090
    7424 3hyk:C (2.31) BS02 MG 2.7.8.7 GO:0000287 ... Q81JG3 22993090
    7425 3hyl:A (2.16) BS01 MG 2.2.1.1 GO:0003824 ... A0A6L7H165 N/A
    7426 3hyl:B (2.16) BS01 MG 2.2.1.1 GO:0003824 ... A0A6L7H165 N/A
    7427 3hzh:A (1.96) BS01 MG ? GO:0000160 ... O51615 20080618
    7428 3hzm:A (1.8) BS01 MG N/A N/A N/A 20000757
    7429 3hzt:A (2.0) BS01 MG 2.7.11.17 GO:0004672 ... Q3HNM6 20436473
    7430 3hzy:B (2.1) BS01 MG N/A N/A N/A 20000757
    7431 3i0o:A (2.4) BS03 MG ? GO:0000166 ... O06916 20089863
    7432 3i3b:A (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7433 3i3b:A (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7434 3i3b:B (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7435 3i3b:B (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7436 3i3b:C (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7437 3i3b:C (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7438 3i3b:D (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7439 3i3b:D (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7440 3i3d:A (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7441 3i3d:A (2.2) BS04 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7442 3i3d:B (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7443 3i3d:B (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7444 3i3d:C (2.2) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7445 3i3d:C (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7446 3i3d:D (2.2) BS03 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7447 3i3d:D (2.2) BS04 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7448 3i3e:A (2.1) BS01 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7449 3i3e:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7450 3i3e:B (2.1) BS01 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7451 3i3e:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7452 3i3e:C (2.1) BS01 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7453 3i3e:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7454 3i3e:D (2.1) BS01 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7455 3i3e:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 20921997
    7456 3i3o:A (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7457 3i3o:B (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7458 3i3o:C (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7459 3i3o:D (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7460 3i3o:E (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7461 3i3o:F (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7462 3i3o:H (2.06) BS01 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7463 3i3s:R (1.36) BS02 MG 3.6.5.2 GO:0003924 ... P01112 19966803
    7464 3i3s:R (1.36) BS04 MG 3.6.5.2 GO:0003924 ... P01112 19966803
    7465 3i4k:A (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7466 3i4k:B (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7467 3i4k:C (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7468 3i4k:D (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7469 3i4k:E (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7470 3i4k:F (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7471 3i4k:G (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7472 3i4k:H (2.2) BS01 MG 5.5.1.1 GO:0003824 ... Q8NN12 N/A
    7473 3i4m:A (3.7) BS03 MG 2.7.7.6 GO:0000428 ... P04050 19758983
    7474 3i4n:A (3.9) BS03 MG 2.7.7.6 GO:0000428 ... P04050 19758983
    7475 3i55:A (3.11) BS02 MG ? GO:0002181 ... P20276 19738021
    7476 3i55:A (3.11) BS03 MG ? GO:0002181 ... P20276 19738021
    7477 3i55:T (3.11) BS02 MG ? GO:0002181 ... P10972 19738021
    7478 3i55:Y (3.11) BS02 MG ? GO:0000166 ... P12736 19738021
    7479 3i56:A (2.9) BS02 MG ? GO:0002181 ... P20276 19738021
    7480 3i56:A (2.9) BS03 MG ? GO:0002181 ... P20276 19738021
    7481 3i56:T (2.9) BS02 MG ? GO:0002181 ... P10972 19738021
    7482 3i56:Y (2.9) BS02 MG ? GO:0000166 ... P12736 19738021
    7483 3i5f:A (3.1) BS01 MG ? GO:0003774 ... O44934 17502101
    7484 3i6b:B (2.49) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7485 3i6b:C (2.49) BS01 MG 3.1.3.45 GO:0009103 ... P67653 19726684
    7486 3i6e:A (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7487 3i6e:B (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7488 3i6e:C (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7489 3i6e:D (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7490 3i6e:E (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7491 3i6e:F (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7492 3i6e:G (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7493 3i6e:H (1.7) BS01 MG 5.5.1.1 GO:0000287 ... Q5LM96 N/A
    7494 3i6t:A (1.9) BS01 MG 5.5.1.1 GO:0000287 ... Q28SI7 N/A
    7495 3i6t:B (1.9) BS01 MG 5.5.1.1 GO:0000287 ... Q28SI7 N/A
    7496 3i6t:C (1.9) BS01 MG 5.5.1.1 GO:0000287 ... Q28SI7 N/A
    7497 3i6t:D (1.9) BS01 MG 5.5.1.1 GO:0000287 ... Q28SI7 N/A
    7498 3i76:A (2.0) BS01 MG 3.-.-.- GO:0008253 ... O06480 N/A
    7499 3i76:B (2.0) BS01 MG 3.-.-.- GO:0008253 ... O06480 N/A
    7500 3i76:C (2.0) BS01 MG 3.-.-.- GO:0008253 ... O06480 N/A
    7501 3i8b:A (2.0) BS01 MG 2.7.1.17 GO:0004856 ... A1A0I0 N/A
    7502 3iaf:A (2.8) BS02 MG 4.1.2.38 GO:0000287 ... Q9F4L3 20030408
    7503 3iaf:B (2.8) BS03 MG 4.1.2.38 GO:0000287 ... Q9F4L3 20030408
    7504 3iaf:C (2.8) BS02 MG 4.1.2.38 GO:0000287 ... Q9F4L3 20030408
    7505 3iaf:D (2.8) BS03 MG 4.1.2.38 GO:0000287 ... Q9F4L3 20030408
    7506 3iam:3 (3.1) BS05 MG 7.1.1.- GO:0003954 ... Q56223 19635800
    7507 3iam:C (3.1) BS05 MG 7.1.1.- GO:0003954 ... Q56223 19635800
    7508 3iap:A (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7509 3iap:B (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7510 3iap:C (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7511 3iap:D (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7512 3iaq:A (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7513 3iaq:A (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7514 3iaq:B (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7515 3iaq:B (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7516 3iaq:C (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7517 3iaq:D (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7518 3iaq:D (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19936901
    7519 3iba:A (2.4) BS01 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7520 3iba:A (2.4) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7521 3ibj:A (3.02) BS02 MG 3.1.4.17 GO:0004114 ... O00408 19828435
    7522 3ibs:A (2.1) BS01 MG ? N/A Q8A9A9 N/A
    7523 3ibs:B (2.1) BS01 MG ? N/A Q8A9A9 N/A
    7524 3ic4:A (1.7) BS01 MG ? GO:0009055 ... O28736 N/A
    7525 3ice:D (2.8) BS04 MG 3.6.4.- GO:0003676 ... P0AG30 19879839
    7526 3ice:E (2.8) BS03 MG 3.6.4.- GO:0003676 ... P0AG30 19879839
    7527 3ick:A (2.4) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7528 3ick:A (2.4) BS04 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7529 3icm:A (2.2) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7530 3icm:A (2.2) BS04 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7531 3icn:A (2.4) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7532 3icn:A (2.4) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7533 3icq:B (3.2) BS03 MG ? GO:0003924 ... P32835 19680239
    7534 3icq:C (3.2) BS03 MG ? GO:0003924 ... P32835 19680239
    7535 3icz:A (2.15) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7536 3icz:A (2.15) BS04 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    7537 3id0:A (2.81) BS02 MG 2.5.1.10 GO:0004161 ... Q8WS25 19876942
    7538 3id0:A (2.81) BS03 MG 2.5.1.10 GO:0004161 ... Q8WS25 19876942
    7539 3iev:A (1.9) BS02 MG ? GO:0000028 ... O67800 19706445
    7540 3ig5:A (2.1) BS02 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    7541 3ig8:A (2.69) BS03 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    7542 3ig8:A (2.69) BS04 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    7543 3ig8:A (2.69) BS05 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    7544 3ihk:A (3.0) BS02 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    7545 3ihk:A (3.0) BS03 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    7546 3ihk:B (3.0) BS01 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    7547 3ihk:B (3.0) BS02 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    7548 3ihk:C (3.0) BS03 MG 2.7.6.2 GO:0004788 ... Q8DVV9 N/A
    7549 3iie:A (2.21) BS01 MG 1.1.1.267 GO:0008299 ... B1JQG4 N/A
    7550 3iie:B (2.21) BS01 MG 1.1.1.267 GO:0008299 ... B1JQG4 N/A
    7551 3iil:A (2.0) BS02 MG 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    7552 3iiv:B (1.8) BS01 MG N/A GO:0000105 ... N/A 20036254
    7553 3iji:A (1.6) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    7554 3iji:B (1.6) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    7555 3ijl:A (1.5) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    7556 3ijl:B (1.5) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    7557 3ijq:A (2.0) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    7558 3ijq:B (2.0) BS03 MG 5.1.1.20 GO:0016855 ... Q8A861 22392983
    7559 3ijr:A (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7560 3ijr:B (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7561 3ijr:C (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7562 3ijr:D (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7563 3ijr:E (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7564 3ijr:F (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7565 3ijr:G (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7566 3ijr:H (2.05) BS02 MG ? GO:0000166 ... A0A6L8PL20 N/A
    7567 3ijy:B (2.85) BS02 MG N/A N/A N/A 19767317
    7568 3ild:A (3.1) BS01 MG ? N/A Q70LE6 20200253
    7569 3ilf:A (1.8) BS04 MG 3.2.1.178 GO:0004553 ... D7GXG0 20376150
    7570 3imd:A (2.0) BS02 MG ? N/A P62993 19886660
    7571 3in5:A (3.2) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 19492058
    7572 3in5:A (3.2) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 19492058
    7573 3in5:B (3.2) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 19492058
    7574 3in5:B (3.2) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 19492058
    7575 3ip0:A (0.89) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    7576 3ip0:A (0.89) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    7577 3ip4:B (1.9) BS01 MG 6.3.5.- GO:0003824 ... P64201 19906721
    7578 3ipx:A (2.0) BS03 MG 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 19836232
    7579 3iqv:A (1.2) BS03 MG ? GO:0000122 ... P31947 20679480
    7580 3ir2:A (2.25) BS03 MG 3.5.4.38 GO:0003824 ... Q9HC16 20152150
    7581 3ir2:B (2.25) BS03 MG 3.5.4.38 GO:0003824 ... Q9HC16 20152150
    7582 3is5:A (2.55) BS02 MG N/A GO:0004672 ... N/A N/A
    7583 3is5:B (2.55) BS02 MG N/A GO:0004672 ... N/A N/A
    7584 3is5:C (2.55) BS02 MG N/A GO:0004672 ... N/A N/A
    7585 3is5:D (2.55) BS02 MG N/A GO:0004672 ... N/A N/A
    7586 3is5:E (2.55) BS02 MG N/A GO:0004672 ... N/A N/A
    7587 3is5:F (2.55) BS01 MG N/A GO:0004672 ... N/A N/A
    7588 3iuk:A (1.85) BS01 MG ? GO:0046872 ... A1R4M8 N/A
    7589 3iuk:B (1.85) BS01 MG ? GO:0046872 ... A1R4M8 N/A
    7590 3ixc:A (1.61) BS01 MG ? GO:0016740 ... Q2GIS1 N/A
    7591 3j16:B (7.2) BS03 MG ? GO:0000054 ... Q03195 22358840
    7592 3j6h:B (8.1) BS01 MG ? GO:0000226 ... P02554 25777528
    7593 3j79:D (3.2) BS02 MG ? GO:0002181 ... Q8I3T9 24913268
    7594 3j7h:A (3.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 25071206
    7595 3j7h:B (3.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 25071206
    7596 3j7h:C (3.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 25071206
    7597 3j7h:D (3.2) BS01 MG 3.2.1.23 GO:0000287 ... P00722 25071206
    7598 3j7i:A (8.9) BS01 MG 3.6.5.- GO:0000226 ... P02550 22851320
    7599 3j7p:SL (3.5) BS02 MG ? GO:0003735 ... F2Z4Y8 24930395
    7600 3j7r:SL (3.9) BS02 MG N/A GO:0003735 ... N/A 24930395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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