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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 3fr7:B (1.55) BS01 MG 1.1.1.86 GO:0000287 ... Q65XK0 19362563
    7002 3fr8:A (2.8) BS01 MG 1.1.1.86 GO:0000287 ... Q65XK0 19362563
    7003 3fr8:B (2.8) BS01 MG 1.1.1.86 GO:0000287 ... Q65XK0 19362563
    7004 3ftq:A (2.9) BS01 MG ? GO:0005525 ... P42208 19805342
    7005 3ftq:B (2.9) BS01 MG ? GO:0005525 ... P42208 19805342
    7006 3ftq:C (2.9) BS01 MG ? GO:0005525 ... P42208 19805342
    7007 3ftq:D (2.9) BS01 MG ? GO:0005525 ... P42208 19805342
    7008 3fv9:A (1.9) BS01 MG ? GO:0016854 ... A3SNG0 N/A
    7009 3fv9:B (1.9) BS01 MG ? GO:0016854 ... A3SNG0 N/A
    7010 3fv9:C (1.9) BS01 MG ? GO:0016854 ... A3SNG0 N/A
    7011 3fv9:E (1.9) BS01 MG ? GO:0016854 ... A3SNG0 N/A
    7012 3fv9:F (1.9) BS01 MG ? GO:0016854 ... A3SNG0 N/A
    7013 3fvd:A (2.3) BS01 MG ? GO:0003824 ... A3SNF7 N/A
    7014 3fvd:B (2.3) BS01 MG ? GO:0003824 ... A3SNF7 N/A
    7015 3fvy:A (1.9) BS02 MG 3.4.14.4 GO:0004177 ... Q9NY33 22493238
    7016 3fw7:A (1.825) BS02 MG 1.21.3.3 GO:0009820 ... P30986 N/A
    7017 3fw8:A (1.5) BS02 MG 1.21.3.3 GO:0009820 ... P30986 N/A
    7018 3fw9:A (1.489) BS03 MG 1.21.3.3 GO:0009820 ... P30986 N/A
    7019 3fwa:A (1.496) BS03 MG 1.21.3.3 GO:0009820 ... P30986 N/A
    7020 3fws:A (2.03) BS02 MG ? N/A O34994 N/A
    7021 3fws:A (2.03) BS03 MG ? N/A O34994 N/A
    7022 3fws:B (2.03) BS02 MG ? N/A O34994 N/A
    7023 3fxg:A (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7024 3fxg:B (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7025 3fxg:C (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7026 3fxg:D (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7027 3fxg:E (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7028 3fxg:F (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7029 3fxg:G (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7030 3fxg:H (1.9) BS01 MG ? GO:0000287 ... D0VX14 N/A
    7031 3fye:A (2.15) BS04 MG 7.1.1.9 GO:0004129 ... P33517 19397279
    7032 3fye:C (2.15) BS04 MG 7.1.1.9 GO:0004129 ... P33517 19397279
    7033 3fyh:A (1.9) BS02 MG ? GO:0000166 ... O73948 19555119
    7034 3fyi:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P33517 19397279
    7035 3fyi:C (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P33517 19397279
    7036 3fyy:A (1.8) BS01 MG 4.2.1.158 GO:0016829 ... Q8EMJ9 19883118
    7037 3fyy:A (1.8) BS02 MG 4.2.1.158 GO:0016829 ... Q8EMJ9 19883118
    7038 3fyy:B (1.8) BS01 MG 4.2.1.158 GO:0016829 ... Q8EMJ9 19883118
    7039 3fyy:B (1.8) BS02 MG 4.2.1.158 GO:0016829 ... Q8EMJ9 19883118
    7040 3fzi:A (1.9) BS01 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7041 3fzn:A (1.62) BS02 MG 4.1.1.7 GO:0000287 ... P20906 19182954
    7042 3fzn:B (1.62) BS03 MG 4.1.1.7 GO:0000287 ... P20906 19182954
    7043 3fzn:C (1.62) BS02 MG 4.1.1.7 GO:0000287 ... P20906 19182954
    7044 3fzn:D (1.62) BS04 MG 4.1.1.7 GO:0000287 ... P20906 19182954
    7045 3g10:A (2.597) BS01 MG 3.1.13.4 GO:0000175 ... O74856 19307292
    7046 3g15:A (1.7) BS02 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 20299452
    7047 3g15:A (1.7) BS04 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 20299452
    7048 3g15:B (1.7) BS02 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 20299452
    7049 3g15:B (1.7) BS04 MG 2.7.1.32
    2.7.1.82    		 N/A P35790 20299452
    7050 3g1b:A (1.448) BS02 MG ? GO:0006508 ... Q9A5I0 19451643
    7051 3g1b:B (1.448) BS02 MG ? GO:0006508 ... Q9A5I0 19451643
    7052 3g1k:A (3.1) BS01 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7053 3g1k:B (3.1) BS01 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7054 3g2c:A (2.3) BS02 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7055 3g2c:B (2.3) BS02 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7056 3g2f:A (2.35) BS02 MG 2.7.11.30 GO:0004672 ... Q13873 31797984
    7057 3g2f:B (2.35) BS02 MG 2.7.11.30 GO:0004672 ... Q13873 31797984
    7058 3g37:O (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7059 3g37:O (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7060 3g37:P (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7061 3g37:P (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7062 3g37:Q (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7063 3g37:Q (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7064 3g37:Q (6.0) BS04 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7065 3g37:R (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7066 3g37:S (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7067 3g37:S (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7068 3g37:T (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7069 3g37:T (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7070 3g37:U (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7071 3g37:U (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7072 3g37:V (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7073 3g37:W (6.0) BS01 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7074 3g37:W (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7075 3g37:W (6.0) BS04 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7076 3g37:X (6.0) BS01 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7077 3g37:X (6.0) BS03 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7078 3g37:Y (6.0) BS01 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7079 3g37:Z (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 20946985
    7080 3g3c:A (3.04) BS03 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7081 3g3c:B (3.04) BS03 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7082 3g3y:A (2.5) BS01 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7083 3g3y:B (2.5) BS02 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7084 3g4f:A (2.651) BS02 MG 4.2.3.13 GO:0000287 ... Q39761 19489610
    7085 3g4f:A (2.651) BS03 MG 4.2.3.13 GO:0000287 ... Q39761 19489610
    7086 3g4f:A (2.651) BS04 MG 4.2.3.13 GO:0000287 ... Q39761 19489610
    7087 3g4f:B (2.651) BS02 MG 4.2.3.13 GO:0000287 ... Q39761 19489610
    7088 3g4f:B (2.651) BS03 MG 4.2.3.13 GO:0000287 ... Q39761 19489610
    7089 3g4f:B (2.651) BS04 MG 4.2.3.13 GO:0000287 ... Q39761 19489610
    7090 3g4s:A (3.2) BS02 MG ? GO:0002181 ... P20276 19362093
    7091 3g4s:C (3.2) BS02 MG ? GO:0003723 ... P12735 19362093
    7092 3g4s:T (3.2) BS02 MG ? GO:0002181 ... P10972 19362093
    7093 3g4t:A (2.64) BS03 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7094 3g4t:B (2.64) BS03 MG 3.1.11.2
    4.2.99.18    		 GO:0003677 ... O26314 20434457
    7095 3g6e:A (2.7) BS02 MG ? GO:0002181 ... P20276 19362093
    7096 3g6e:T (2.7) BS02 MG ? GO:0002181 ... P10972 19362093
    7097 3g6e:Y (2.7) BS02 MG ? GO:0003735 ... P12736 19362093
    7098 3g6v:A (2.2) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 19368886
    7099 3g6v:A (2.2) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 19368886
    7100 3g6x:A (2.08) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 19368886
    7101 3g6x:A (2.08) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 19368886
    7102 3g6y:A (2.1) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 19368886
    7103 3g6y:A (2.1) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 19368886
    7104 3g71:A (2.85) BS02 MG ? GO:0002181 ... P20276 19362093
    7105 3g71:T (2.85) BS02 MG ? GO:0002181 ... P10972 19362093
    7106 3g71:Y (2.85) BS02 MG ? GO:0003735 ... P12736 19362093
    7107 3g73:A (2.21) BS03 MG ? GO:0000086 ... Q08050 20360045
    7108 3g73:B (2.21) BS03 MG ? GO:0000086 ... Q08050 20360045
    7109 3g82:C (3.11) BS01 MG ? GO:0003924 ... P04896 N/A
    7110 3g8c:A (2.0) BS02 MG 6.3.4.14 GO:0003824 ... P24182 19213731
    7111 3g8c:B (2.0) BS02 MG 6.3.4.14 GO:0003824 ... P24182 19213731
    7112 3g9d:A (2.5) BS01 MG 3.2.2.24 GO:0000166 ... A7XNI2 19477184
    7113 3g9d:A (2.5) BS02 MG 3.2.2.24 GO:0000166 ... A7XNI2 19477184
    7114 3g9d:B (2.5) BS01 MG 3.2.2.24 GO:0000166 ... A7XNI2 19477184
    7115 3g9d:B (2.5) BS02 MG 3.2.2.24 GO:0000166 ... A7XNI2 19477184
    7116 3gah:A (1.17) BS03 MG 2.5.1.17 GO:0005515 ... Q50EJ2 19236001
    7117 3gcm:A (2.5) BS03 MG 2.7.7.8 GO:0003723 ... A7ZS61 19327365
    7118 3gcm:B (2.5) BS03 MG 2.7.7.8 GO:0003723 ... A7ZS61 19327365
    7119 3gcm:C (2.5) BS03 MG 2.7.7.8 GO:0003723 ... A7ZS61 19327365
    7120 3gdx:A (2.2) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 19351147
    7121 3gdx:A (2.2) BS06 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 19351147
    7122 3geb:A (2.4) BS01 MG 3.1.3.48 GO:0004725 ... O00167 N/A
    7123 3geb:B (2.4) BS01 MG 3.1.3.48 GO:0004725 ... O00167 N/A
    7124 3geb:C (2.4) BS01 MG 3.1.3.48 GO:0004725 ... O00167 N/A
    7125 3geb:D (2.4) BS01 MG 3.1.3.48 GO:0004725 ... O00167 N/A
    7126 3gf0:A (2.62) BS01 MG 3.5.4.30 GO:0000166 ... Q57872 N/A
    7127 3gft:A (2.27) BS01 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    7128 3gft:B (2.27) BS01 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    7129 3gft:C (2.27) BS01 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    7130 3gft:D (2.27) BS01 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    7131 3gft:E (2.27) BS01 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    7132 3gie:A (2.65) BS02 MG 2.7.13.3 GO:0000155 ... O34757 19805278
    7133 3gie:B (2.65) BS02 MG 2.7.13.3 GO:0000155 ... O34757 19805278
    7134 3gig:A (3.502) BS02 MG 2.7.13.3 GO:0000155 ... O34757 19805278
    7135 3gig:B (3.502) BS02 MG 2.7.13.3 GO:0000155 ... O34757 19805278
    7136 3gj7:A (1.93) BS03 MG 3.6.5.- GO:0000054 ... P62826 19505478
    7137 3gj7:C (1.93) BS03 MG 3.6.5.- GO:0000054 ... P62826 19505478
    7138 3gjx:C (2.5) BS02 MG 3.6.5.- GO:0000054 ... P62826 19389996
    7139 3gjx:F (2.5) BS02 MG 3.6.5.- GO:0000054 ... P62826 19389996
    7140 3gkr:A (1.6) BS02 MG 2.3.2.10 GO:0008360 ... Q9EY50 N/A
    7141 3gkr:A (1.6) BS03 MG 2.3.2.10 GO:0008360 ... Q9EY50 N/A
    7142 3gkr:A (1.6) BS04 MG 2.3.2.10 GO:0008360 ... Q9EY50 N/A
    7143 3gl9:A (1.8) BS01 MG ? GO:0000160 ... Q9WYT9 19800110
    7144 3gl9:B (1.8) BS01 MG ? GO:0000160 ... Q9WYT9 19800110
    7145 3gl9:C (1.8) BS01 MG ? GO:0000160 ... Q9WYT9 19800110
    7146 3gl9:D (1.8) BS01 MG ? GO:0000160 ... Q9WYT9 19800110
    7147 3glf:B (3.388) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7148 3glf:D (3.388) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7149 3glf:G (3.388) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7150 3glg:B (3.25) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7151 3glg:D (3.25) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7152 3glg:G (3.25) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7153 3glg:H (3.25) BS03 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7154 3gli:B (3.5) BS05 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7155 3gli:D (3.5) BS05 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7156 3gli:G (3.5) BS05 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    7157 3gn4:D (2.7) BS01 MG ? GO:0005509 ... P62152 19664948
    7158 3gn4:D (2.7) BS02 MG ? GO:0005509 ... P62152 19664948
    7159 3gn4:D (2.7) BS03 MG ? GO:0005509 ... P62152 19664948
    7160 3gn4:H (2.7) BS01 MG ? GO:0005509 ... P62152 19664948
    7161 3gn4:H (2.7) BS02 MG ? GO:0005509 ... P62152 19664948
    7162 3gn4:H (2.7) BS03 MG ? GO:0005509 ... P62152 19664948
    7163 3gn6:A (1.8) BS01 MG ? GO:0046872 ... Q8KDY2 N/A
    7164 3gn6:B (1.8) BS01 MG ? GO:0046872 ... Q8KDY2 N/A
    7165 3gn6:C (1.8) BS01 MG ? GO:0046872 ... Q8KDY2 N/A
    7166 3gn6:D (1.8) BS01 MG ? GO:0046872 ... Q8KDY2 N/A
    7167 3gnz:P (1.35) BS01 MG ? GO:0031640 ... Q9SPD4 19520828
    7168 3go2:A (1.7) BS01 MG ? GO:0003824 ... Q13PB7 N/A
    7169 3go2:A (1.7) BS02 MG ? GO:0003824 ... Q13PB7 N/A
    7170 3go6:A (1.98) BS02 MG 2.7.1.15 GO:0004747 ... P71913 N/A
    7171 3go6:B (1.98) BS02 MG 2.7.1.15 GO:0004747 ... P71913 N/A
    7172 3go7:A (2.5) BS02 MG 2.7.1.15 GO:0004747 ... P71913 N/A
    7173 3go7:B (2.5) BS01 MG 2.7.1.15 GO:0004747 ... P71913 N/A
    7174 3goc:A (1.6) BS01 MG 3.1.21.7 GO:0000287 ... Q82MH6 N/A
    7175 3goc:B (1.6) BS01 MG 3.1.21.7 GO:0000287 ... Q82MH6 N/A
    7176 3goc:B (1.6) BS02 MG 3.1.21.7 GO:0000287 ... Q82MH6 N/A
    7177 3gol:A (2.85) BS02 MG 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19342234
    7178 3gol:B (2.85) BS02 MG 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19342234
    7179 3gp9:A (1.8) BS03 MG 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    7180 3gp9:B (1.8) BS03 MG 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    7181 3gp9:C (1.8) BS03 MG 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    7182 3gp9:D (1.8) BS03 MG 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    7183 3gp9:E (1.8) BS03 MG 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    7184 3gp9:F (1.8) BS03 MG 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    7185 3gpc:A (1.9) BS01 MG 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    7186 3gpc:B (1.9) BS01 MG 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    7187 3gq7:A (2.05) BS02 MG ? N/A P20345 19450535
    7188 3gq8:A (2.0) BS02 MG ? N/A P20345 19450535
    7189 3gqc:A (2.5) BS05 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7190 3gqc:A (2.5) BS06 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7191 3gqc:A (2.5) BS07 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7192 3gqc:A (2.5) BS08 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7193 3gqc:B (2.5) BS04 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7194 3gqc:B (2.5) BS05 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7195 3gqc:C (2.5) BS04 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7196 3gqc:C (2.5) BS05 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7197 3gqc:C (2.5) BS06 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7198 3gqc:D (2.5) BS05 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7199 3gqc:D (2.5) BS06 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    7200 3gqc:D (2.5) BS07 MG 2.7.7.- GO:0003684 ... Q9UBZ9 19464298
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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