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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 3ck5:A (2.3) BS01 MG 5.5.1.25 GO:0000287 ... Q9RKF7 N/A
    6402 3ck5:B (2.3) BS01 MG 5.5.1.25 GO:0000287 ... Q9RKF7 N/A
    6403 3ck5:C (2.3) BS01 MG 5.5.1.25 GO:0000287 ... Q9RKF7 N/A
    6404 3ck5:D (2.3) BS01 MG 5.5.1.25 GO:0000287 ... Q9RKF7 N/A
    6405 3cke:D (2.4) BS01 MG 4.2.3.9 GO:0016829 ... Q9UR08 18385128
    6406 3ckg:A (1.8) BS01 MG ? GO:0009279 ... Q45040 18842042
    6407 3cly:A (2.0) BS01 MG 2.7.10.1 GO:0004672 ... P21802 19060208
    6408 3cma:A (2.8) BS02 MG ? GO:0002181 ... P20276 18818369
    6409 3cma:A (2.8) BS03 MG ? GO:0002181 ... P20276 18818369
    6410 3cma:T (2.8) BS02 MG ? GO:0002181 ... P10972 18818369
    6411 3cma:Y (2.8) BS02 MG ? GO:0000166 ... P12736 18818369
    6412 3cme:A (2.95) BS02 MG ? GO:0002181 ... P20276 18818369
    6413 3cme:A (2.95) BS03 MG ? GO:0002181 ... P20276 18818369
    6414 3cme:T (2.95) BS02 MG ? GO:0002181 ... P10972 18818369
    6415 3cme:Y (2.95) BS02 MG ? GO:0000166 ... P12736 18818369
    6416 3cmr:A (2.05) BS04 MG 3.1.3.1 GO:0000287 ... P00634 18627128
    6417 3cmr:B (2.05) BS04 MG 3.1.3.1 GO:0000287 ... P00634 18627128
    6418 3cmt:A (3.15) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6419 3cmt:A (3.15) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    6420 3cmt:A (3.15) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    6421 3cmt:A (3.15) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    6422 3cmt:D (3.15) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6423 3cmt:D (3.15) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    6424 3cmt:D (3.15) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    6425 3cmt:D (3.15) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    6426 3cmt:D (3.15) BS11 MG ? GO:0000725 ... P0A7G6 18497818
    6427 3cmu:A (4.2) BS04 MG ? GO:0000725 ... P0A7G6 18497818
    6428 3cmu:A (4.2) BS08 MG ? GO:0000725 ... P0A7G6 18497818
    6429 3cmv:A (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6430 3cmv:A (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6431 3cmv:A (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6432 3cmv:B (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6433 3cmv:B (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6434 3cmv:B (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6435 3cmv:C (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6436 3cmv:C (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6437 3cmv:C (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6438 3cmv:C (4.3) BS04 MG ? GO:0000725 ... P0A7G6 18497818
    6439 3cmv:D (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6440 3cmv:D (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6441 3cmv:D (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6442 3cmv:D (4.3) BS04 MG ? GO:0000725 ... P0A7G6 18497818
    6443 3cmv:E (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6444 3cmv:E (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6445 3cmv:E (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6446 3cmv:E (4.3) BS04 MG ? GO:0000725 ... P0A7G6 18497818
    6447 3cmv:F (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6448 3cmv:F (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6449 3cmv:F (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6450 3cmv:G (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6451 3cmv:G (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6452 3cmv:G (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6453 3cmv:H (4.3) BS01 MG ? GO:0000725 ... P0A7G6 18497818
    6454 3cmv:H (4.3) BS02 MG ? GO:0000725 ... P0A7G6 18497818
    6455 3cmv:H (4.3) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6456 3cmw:A (2.8) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6457 3cmx:A (3.4) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6458 3cmx:A (3.4) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    6459 3cmx:A (3.4) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    6460 3cmx:A (3.4) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    6461 3cmx:A (3.4) BS11 MG ? GO:0000725 ... P0A7G6 18497818
    6462 3cmx:D (3.4) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    6463 3cmx:D (3.4) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    6464 3cmx:D (3.4) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    6465 3cmx:D (3.4) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    6466 3cmx:D (3.4) BS11 MG ? GO:0000725 ... P0A7G6 18497818
    6467 3cnx:B (2.1) BS01 MG ? GO:0046872 ... Q82EE4 N/A
    6468 3cnx:C (2.1) BS01 MG ? GO:0046872 ... Q82EE4 N/A
    6469 3cp6:A (1.95) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    6470 3cp6:A (1.95) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    6471 3cpw:A (2.7) BS02 MG ? GO:0002181 ... P20276 18494460
    6472 3cpw:S (2.7) BS02 MG ? GO:0002181 ... P10972 18494460
    6473 3cpw:X (2.7) BS02 MG ? GO:0000166 ... P12736 18494460
    6474 3cq3:A (2.1) BS01 MG ? N/A Q53W28 N/A
    6475 3cq3:B (2.1) BS01 MG ? N/A Q53W28 N/A
    6476 3cq3:C (2.1) BS01 MG ? N/A Q53W28 N/A
    6477 3cq3:D (2.1) BS01 MG ? N/A Q53W28 N/A
    6478 3cq3:E (2.1) BS01 MG ? N/A Q53W28 N/A
    6479 3cr3:A (2.1) BS01 MG 2.7.1.121 GO:0000287 ... Q9CIV7 18957416
    6480 3cr3:A (2.1) BS02 MG 2.7.1.121 GO:0000287 ... Q9CIV7 18957416
    6481 3cr3:B (2.1) BS01 MG 2.7.1.121 GO:0000287 ... Q9CIV7 18957416
    6482 3cr3:B (2.1) BS02 MG 2.7.1.121 GO:0000287 ... Q9CIV7 18957416
    6483 3crc:B (3.0) BS01 MG 3.6.1.8 GO:0005515 ... P0AEY3 18353782
    6484 3crl:A (2.61) BS01 MG 2.7.11.2 GO:0004672 ... Q64536 18387944
    6485 3csk:A (1.95) BS02 MG 3.4.14.4 GO:0004177 ... Q08225 18550518
    6486 3ct2:A (1.8) BS01 MG 5.5.1.1 GO:0003824 ... Q4K9X1 19220063
    6487 3ct2:B (1.8) BS01 MG 5.5.1.1 GO:0003824 ... Q4K9X1 19220063
    6488 3ct7:A (2.5) BS01 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6489 3ct7:B (2.5) BS01 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6490 3ct7:C (2.5) BS01 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6491 3ct7:D (2.5) BS01 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6492 3ct7:E (2.5) BS01 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6493 3ct7:F (2.5) BS01 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6494 3ctl:A (2.2) BS02 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6495 3ctl:B (2.2) BS02 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6496 3ctl:C (2.2) BS02 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6497 3ctl:D (2.2) BS02 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6498 3ctl:E (2.2) BS02 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6499 3ctl:F (2.2) BS02 MG 5.1.3.- GO:0004750 ... P32719 18700786
    6500 3cu8:B (2.4) BS02 MG ? GO:0000122 ... P63104 20679480
    6501 3cur:H (2.4) BS03 MG 1.12.2.1 GO:0008901 ... P18188 18685111
    6502 3cur:I (2.4) BS02 MG 1.12.2.1 GO:0008901 ... P18188 18685111
    6503 3cur:J (2.4) BS02 MG 1.12.2.1 GO:0008901 ... P18188 18685111
    6504 3cus:Q (2.2) BS01 MG 1.12.2.1 GO:0008901 ... P18188 18685111
    6505 3cus:R (2.2) BS01 MG 1.12.2.1 GO:0008901 ... P18188 18685111
    6506 3cus:S (2.2) BS01 MG 1.12.2.1 GO:0008901 ... P18188 18685111
    6507 3cux:A (1.7) BS01 MG 2.3.3.9 GO:0003824 ... A0A6L8PPD0 18714089
    6508 3cux:A (1.7) BS02 MG 2.3.3.9 GO:0003824 ... A0A6L8PPD0 18714089
    6509 3cuz:A (1.04) BS01 MG 2.3.3.9 GO:0003824 ... P08997 18714089
    6510 3cv2:A (1.4) BS02 MG 2.3.3.9 GO:0003824 ... P08997 18714089
    6511 3cv2:B (1.4) BS02 MG 2.3.3.9 GO:0003824 ... P08997 18714089
    6512 3cvj:A (2.0) BS01 MG ? GO:0097367 ... Q9K7N6 N/A
    6513 3cvj:B (2.0) BS01 MG ? GO:0097367 ... Q9K7N6 N/A
    6514 3cvj:C (2.0) BS01 MG ? GO:0097367 ... Q9K7N6 N/A
    6515 3cvj:D (2.0) BS01 MG ? GO:0097367 ... Q9K7N6 N/A
    6516 3cwh:A (2.2) BS02 MG 5.3.1.5 GO:0000287 ... P24300 18578508
    6517 3cwh:A (2.2) BS03 MG 5.3.1.5 GO:0000287 ... P24300 18578508
    6518 3cwz:A (3.2) BS01 MG ? GO:0000139 ... P20340 19141279
    6519 3cx6:A (2.5) BS01 MG ? GO:0001664 ... P27601 18940608
    6520 3cx7:A (2.25) BS01 MG ? GO:0001664 ... P27601 18940608
    6521 3cx8:A (2.0) BS01 MG ? GO:0001664 ... P27601 18940608
    6522 3cxc:2 (3.0) BS02 MG ? GO:0000049 ... P32411 18947996
    6523 3cxc:S (3.0) BS02 MG ? GO:0002181 ... P10972 18947996
    6524 3cxc:X (3.0) BS02 MG ? GO:0000166 ... P12736 18947996
    6525 3cxo:A (2.0) BS02 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 18754693
    6526 3cxo:B (2.0) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 18754693
    6527 3cz4:A (1.7) BS01 MG 3.1.3.2 GO:0000287 ... P0AE22 18845157
    6528 3czj:A (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6529 3czj:A (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6530 3czj:B (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6531 3czj:B (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6532 3czj:C (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6533 3czj:C (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6534 3czj:D (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6535 3czj:D (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 19229596
    6536 3d19:A (2.3) BS01 MG N/A N/A N/A N/A
    6537 3d19:B (2.3) BS01 MG N/A N/A N/A N/A
    6538 3d19:C (2.3) BS01 MG N/A N/A N/A N/A
    6539 3d19:D (2.3) BS01 MG N/A N/A N/A N/A
    6540 3d19:E (2.3) BS01 MG N/A N/A N/A N/A
    6541 3d19:F (2.3) BS01 MG N/A N/A N/A N/A
    6542 3d1r:A (1.85) BS04 MG 3.1.3.11 GO:0005737 ... P0A9C9 19073594
    6543 3d2f:A (2.3) BS01 MG ? GO:0005524 ... P32589 18555782
    6544 3d2f:B (2.3) BS01 MG ? GO:0005524 ... P0DMV8 18555782
    6545 3d2f:C (2.3) BS01 MG ? GO:0005524 ... P32589 18555782
    6546 3d2f:D (2.3) BS01 MG ? GO:0005524 ... P0DMV8 18555782
    6547 3d2j:A (2.05) BS01 MG 1.21.3.3 GO:0009820 ... P30986 18953357
    6548 3d46:A (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6549 3d46:B (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6550 3d46:C (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6551 3d46:D (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6552 3d46:E (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6553 3d46:F (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6554 3d46:G (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6555 3d46:H (1.9) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6556 3d47:A (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6557 3d47:B (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6558 3d47:C (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6559 3d47:D (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6560 3d47:E (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6561 3d47:F (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6562 3d47:G (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6563 3d47:H (1.8) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 N/A
    6564 3d6a:A (2.25) BS01 MG ? N/A Q3V3E1 19196006
    6565 3d7m:A (2.9) BS01 MG ? GO:0000287 ... P10824 19222191
    6566 3da3:A (2.5) BS01 MG ? GO:0031640 ... P05820 18640984
    6567 3da3:B (2.5) BS01 MG ? GO:0031640 ... P05820 18640984
    6568 3da3:B (2.5) BS02 MG ? GO:0031640 ... P05820 18640984
    6569 3da8:A (1.3) BS01 MG 2.1.2.2 GO:0000287 ... P9WHM5 19394344
    6570 3day:A (1.95) BS01 MG 6.2.1.2
    6.2.1.25
    GO:0004321 ... Q08AH3 19345228
    6571 3dc7:B (2.12) BS01 MG N/A N/A N/A N/A
    6572 3dd2:H (1.9) BS03 MG 3.4.21.5 GO:0004252 ... P00734 18971322
    6573 3ddc:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 18596699
    6574 3ddh:A (2.0) BS01 MG ? GO:0016787 ... Q8A5Q8 N/A
    6575 3ddh:A (2.0) BS02 MG ? GO:0016787 ... Q8A5Q8 N/A
    6576 3ddh:B (2.0) BS01 MG ? GO:0016787 ... Q8A5Q8 N/A
    6577 3ddv:B (2.65) BS01 MG ? GO:0003677 ... Q835P8 N/A
    6578 3ddv:D (2.65) BS01 MG ? GO:0003677 ... Q835P8 N/A
    6579 3deq:A (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6580 3deq:B (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6581 3deq:C (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6582 3deq:D (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6583 3der:A (1.9) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6584 3der:B (1.9) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6585 3der:C (1.9) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6586 3der:D (1.9) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6587 3des:A (2.3) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6588 3des:B (2.3) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6589 3des:C (2.3) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6590 3des:D (2.3) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6591 3dev:A (3.1) BS01 MG ? GO:0003676 ... Q4L745 N/A
    6592 3dev:B (3.1) BS01 MG ? GO:0003676 ... Q4L745 N/A
    6593 3dfy:A (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6594 3dfy:B (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6595 3dfy:C (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6596 3dfy:D (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6597 3dfy:E (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6598 3dfy:F (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6599 3dfy:G (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819
    6600 3dfy:H (2.1) BS01 MG 5.1.1.20 GO:0016853 ... Q9WXM1 19000819

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218