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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 3bpc:A (1.85) BS04 MG N/A N/A N/A 18272175
    6202 3bpd:A (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6203 3bpd:A (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6204 3bpd:A (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6205 3bpd:B (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6206 3bpd:B (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6207 3bpd:B (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6208 3bpd:C (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6209 3bpd:C (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6210 3bpd:D (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6211 3bpd:D (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6212 3bpd:D (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6213 3bpd:E (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6214 3bpd:E (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6215 3bpd:F (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6216 3bpd:F (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6217 3bpd:F (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6218 3bpd:G (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6219 3bpd:G (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6220 3bpd:G (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6221 3bpd:H (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6222 3bpd:H (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6223 3bpd:I (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6224 3bpd:I (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6225 3bpd:J (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6226 3bpd:J (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6227 3bpd:J (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6228 3bpd:J (2.8) BS04 MG ? GO:0046872 ... O28723 N/A
    6229 3bpd:K (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6230 3bpd:K (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6231 3bpd:K (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6232 3bpd:L (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6233 3bpd:L (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6234 3bpd:L (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6235 3bpd:M (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6236 3bpd:M (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6237 3bpd:M (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6238 3bpd:N (2.8) BS01 MG ? GO:0046872 ... O28723 N/A
    6239 3bpd:N (2.8) BS02 MG ? GO:0046872 ... O28723 N/A
    6240 3bpd:N (2.8) BS03 MG ? GO:0046872 ... O28723 N/A
    6241 3bqb:A (2.7) BS01 MG 4.2.1.141 GO:0000287 ... Q97UA0 18448118
    6242 3bqb:X (2.7) BS01 MG 4.2.1.141 GO:0000287 ... Q97UA0 18448118
    6243 3bqb:Y (2.7) BS01 MG 4.2.1.141 GO:0000287 ... Q97UA0 18448118
    6244 3bqb:Z (2.7) BS01 MG 4.2.1.141 GO:0000287 ... Q97UA0 18448118
    6245 3brb:A (1.9) BS01 MG 2.7.10.1 GO:0004672 ... Q12866 19028587
    6246 3brb:B (1.9) BS04 MG 2.7.10.1 GO:0004672 ... Q12866 19028587
    6247 3bre:A (2.4) BS01 MG 2.7.7.65 GO:0000160 ... Q9HXT9 18366254
    6248 3bre:B (2.4) BS01 MG 2.7.7.65 GO:0000160 ... Q9HXT9 18366254
    6249 3brw:D (3.4) BS01 MG 3.6.5.2 GO:0003924 ... P61224 18309292
    6250 3bs1:A (1.6) BS03 MG ? GO:0000156 ... P0A0I7 18462677
    6251 3bsu:C (2.1) BS03 MG 3.1.26.4 N/A O60930 18337749
    6252 3btx:A (2.0) BS03 MG 1.14.11.33 GO:0006281 ... Q6NS38 18432238
    6253 3bu5:A (2.1) BS02 MG 2.7.10.1 GO:0004672 ... P06213 18278056
    6254 3bwm:A (1.98) BS01 MG 2.1.1.6 GO:0000287 ... P21964 18486144
    6255 3bwv:A (1.55) BS01 MG 3.1.3.- GO:0008253 ... Q8CTG7 N/A
    6256 3bwv:B (1.55) BS01 MG 3.1.3.- GO:0008253 ... Q8CTG7 N/A
    6257 3bwy:A (1.3) BS01 MG 2.1.1.6 GO:0000287 ... P21964 18486144
    6258 3bz7:A (2.0) BS01 MG ? GO:0003774 ... P08799 18528569
    6259 3bz8:A (2.2) BS01 MG ? GO:0003774 ... P08799 18528569
    6260 3bz9:A (2.1) BS01 MG ? GO:0003774 ... P08799 18528569
    6261 3bzn:A (2.0) BS01 MG 5.4.4.2 GO:0000287 ... P38051 18453696
    6262 3c14:C (2.68) BS01 MG ? GO:0003924 ... P04896 19243146
    6263 3c15:A (2.78) BS01 MG 4.6.1.1 GO:0009190 ... P30803 19243146
    6264 3c16:C (2.87) BS01 MG ? GO:0003924 ... P04896 19243146
    6265 3c22:A (1.5) BS02 MG ? N/A Q9UJ71 19175323
    6266 3c22:B (1.5) BS02 MG ? N/A Q9UJ71 19175323
    6267 3c22:B (1.5) BS03 MG ? N/A Q9UJ71 19175323
    6268 3c22:C (1.5) BS02 MG ? N/A Q9UJ71 19175323
    6269 3c22:C (1.5) BS03 MG ? N/A Q9UJ71 19175323
    6270 3c22:D (1.5) BS02 MG ? N/A Q9UJ71 19175323
    6271 3c41:J (2.25) BS01 MG 3.6.3.21 GO:0003333 ... D0VWX4 N/A
    6272 3c4q:A (2.8) BS01 MG 2.4.1.250 GO:0000287 ... Q8NTA6 18390549
    6273 3c4q:B (2.8) BS01 MG 2.4.1.250 GO:0000287 ... Q8NTA6 18390549
    6274 3c4v:A (2.6) BS01 MG 2.4.1.250 GO:0000287 ... Q8NTA6 18390549
    6275 3c4v:B (2.6) BS01 MG 2.4.1.250 GO:0000287 ... Q8NTA6 18390549
    6276 3c4w:B (2.7) BS01 MG 2.7.11.14 GO:0001750 ... P28327 18339619
    6277 3c4x:B (2.9) BS01 MG 2.7.11.14 GO:0001750 ... P28327 18339619
    6278 3c51:B (3.55) BS01 MG 2.7.11.14 GO:0001750 ... P28327 18339619
    6279 3c5e:A (1.6) BS01 MG 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    6280 3c5g:A (2.2) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 18369368
    6281 3c5g:B (2.2) BS06 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 18369368
    6282 3c5h:A (1.8) BS01 MG ? GO:0003924 ... Q9NRY4 N/A
    6283 3c5i:A (2.2) BS01 MG ? GO:0004103 ... D0VWT1 N/A
    6284 3c5i:B (2.2) BS01 MG ? GO:0004103 ... D0VWT1 N/A
    6285 3c5i:C (2.2) BS02 MG ? GO:0004103 ... D0VWT1 N/A
    6286 3c5i:D (2.2) BS01 MG ? GO:0004103 ... D0VWT1 N/A
    6287 3c5p:A (2.9) BS01 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6288 3c5p:A (2.9) BS02 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6289 3c5p:B (2.9) BS01 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6290 3c5p:B (2.9) BS02 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6291 3c5p:C (2.9) BS01 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6292 3c5p:C (2.9) BS02 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6293 3c5p:D (2.9) BS01 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6294 3c5p:D (2.9) BS02 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6295 3c5p:E (2.9) BS01 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6296 3c5p:E (2.9) BS02 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6297 3c5p:F (2.9) BS01 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6298 3c5p:F (2.9) BS02 MG ? GO:0046872 ... A0A4Y1WDA8 N/A
    6299 3c6a:A (1.16) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A Q9T1C3 19109896
    6300 3c6h:A (2.8) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A Q9T1C3 19109896
    6301 3c6h:B (2.8) BS01 MG 3.1.21.-
    3.6.4.-    		 N/A Q9T1C3 19109896
    6302 3c7k:A (2.9) BS01 MG ? GO:0003924 ... P18872 18434540
    6303 3c7k:C (2.9) BS01 MG ? GO:0003924 ... P18872 18434540
    6304 3c8c:A (1.5) BS01 MG ? N/A Q9KL26 N/A
    6305 3c8c:B (1.5) BS01 MG ? N/A Q9KL26 N/A
    6306 3c8v:C (2.28) BS01 MG ? GO:0016740 ... Q30V63 N/A
    6307 3c94:A (2.7) BS03 MG 3.1.11.1 GO:0000175 ... P04995 18591666
    6308 3c9h:A (1.9) BS01 MG ? N/A Q7CWZ6 N/A
    6309 3c9h:B (1.9) BS01 MG ? N/A Q7CWZ6 N/A
    6310 3c9r:A (2.3) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6311 3c9r:A (2.3) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6312 3c9r:B (2.3) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6313 3c9r:B (2.3) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6314 3c9s:A (2.2) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6315 3c9s:A (2.2) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6316 3c9s:A (2.2) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6317 3c9s:B (2.2) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6318 3c9s:B (2.2) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6319 3c9s:B (2.2) BS04 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6320 3c9t:A (2.6) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6321 3c9t:A (2.6) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6322 3c9t:A (2.6) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6323 3c9t:B (2.6) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6324 3c9t:B (2.6) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6325 3c9t:B (2.6) BS04 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6326 3c9u:A (1.48) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6327 3c9u:A (1.48) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6328 3c9u:A (1.48) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6329 3c9u:B (1.48) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6330 3c9u:B (1.48) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6331 3c9u:B (1.48) BS04 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    6332 3caw:A (1.87) BS01 MG 4.2.1.113 GO:0009234 ... Q6MQC7 24872444
    6333 3caw:B (1.87) BS01 MG 4.2.1.113 GO:0009234 ... Q6MQC7 24872444
    6334 3cb3:A (2.0) BS01 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6335 3cb3:A (2.0) BS02 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6336 3cb3:B (2.0) BS01 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6337 3cb3:B (2.0) BS02 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6338 3cb3:C (2.0) BS01 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6339 3cb3:C (2.0) BS02 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6340 3cb3:D (2.0) BS01 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6341 3cb3:D (2.0) BS02 MG 4.2.1.-
    4.2.1.42    		 GO:0000287 ... Q12GE3 N/A
    6342 3cbg:A (2.0) BS01 MG 2.1.1.- GO:0008168 ... Q55813 18502765
    6343 3cbt:A (1.7) BS01 MG 3.1.3.5 GO:0016787 ... Q9FBN7 N/A
    6344 3cc2:3 (2.4) BS02 MG ? GO:0000049 ... P32411 18455733
    6345 3cc2:A (2.4) BS02 MG ? GO:0002181 ... P20276 18455733
    6346 3cc2:T (2.4) BS02 MG ? GO:0002181 ... P10972 18455733
    6347 3cc2:Y (2.4) BS02 MG ? GO:0000166 ... P12736 18455733
    6348 3cc4:A (2.7) BS02 MG ? GO:0002181 ... P20276 18455733
    6349 3cc4:T (2.7) BS02 MG ? GO:0002181 ... P10972 18455733
    6350 3cc4:Y (2.7) BS02 MG ? GO:0000166 ... P12736 18455733
    6351 3cc7:A (2.7) BS02 MG ? GO:0002181 ... P20276 18455733
    6352 3cc7:A (2.7) BS03 MG ? GO:0002181 ... P20276 18455733
    6353 3cc7:T (2.7) BS02 MG ? GO:0002181 ... P10972 18455733
    6354 3cc7:Y (2.7) BS02 MG ? GO:0000166 ... P12736 18455733
    6355 3cce:A (2.75) BS02 MG ? GO:0002181 ... P20276 18455733
    6356 3cce:A (2.75) BS03 MG ? GO:0002181 ... P20276 18455733
    6357 3cce:T (2.75) BS02 MG ? GO:0002181 ... P10972 18455733
    6358 3cce:Y (2.75) BS02 MG ? GO:0000166 ... P12736 18455733
    6359 3ccj:A (3.3) BS02 MG ? GO:0002181 ... P20276 18455733
    6360 3ccj:A (3.3) BS03 MG ? GO:0002181 ... P20276 18455733
    6361 3ccj:T (3.3) BS02 MG ? GO:0002181 ... P10972 18455733
    6362 3ccl:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    6363 3ccl:T (2.9) BS02 MG ? GO:0002181 ... P10972 18455733
    6364 3ccl:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    6365 3ccm:A (2.55) BS02 MG ? GO:0002181 ... P20276 18455733
    6366 3ccm:T (2.55) BS02 MG ? GO:0002181 ... P10972 18455733
    6367 3ccm:Y (2.55) BS02 MG ? GO:0000166 ... P12736 18455733
    6368 3ccq:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    6369 3ccq:T (2.9) BS02 MG ? GO:0002181 ... P10972 18455733
    6370 3ccq:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    6371 3ccr:A (3.0) BS02 MG ? GO:0002181 ... P20276 18455733
    6372 3ccr:B (3.0) BS02 MG ? GO:0003723 ... P20279 18455733
    6373 3ccr:T (3.0) BS02 MG ? GO:0002181 ... P10972 18455733
    6374 3ccr:Y (3.0) BS02 MG ? GO:0000166 ... P12736 18455733
    6375 3ccs:A (2.95) BS02 MG ? GO:0002181 ... P20276 18455733
    6376 3ccs:A (2.95) BS03 MG ? GO:0002181 ... P20276 18455733
    6377 3ccs:T (2.95) BS02 MG ? GO:0002181 ... P10972 18455733
    6378 3ccs:Y (2.95) BS02 MG ? GO:0000166 ... P12736 18455733
    6379 3ccu:A (2.8) BS02 MG ? GO:0002181 ... P20276 18455733
    6380 3ccu:A (2.8) BS03 MG ? GO:0002181 ... P20276 18455733
    6381 3ccu:T (2.8) BS02 MG ? GO:0002181 ... P10972 18455733
    6382 3ccu:Y (2.8) BS02 MG ? GO:0000166 ... P12736 18455733
    6383 3ccv:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    6384 3ccv:A (2.9) BS03 MG ? GO:0002181 ... P20276 18455733
    6385 3ccv:T (2.9) BS02 MG ? GO:0002181 ... P10972 18455733
    6386 3ccv:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    6387 3cd6:A (2.75) BS02 MG ? GO:0002181 ... P20276 18455733
    6388 3cd6:T (2.75) BS02 MG ? GO:0002181 ... P10972 18455733
    6389 3cd6:Y (2.75) BS02 MG ? GO:0000166 ... P12736 18455733
    6390 3cfx:A (1.6) BS01 MG ? GO:1901359 ... Q8TTZ5 19234723
    6391 3cfx:A (1.6) BS02 MG ? GO:1901359 ... Q8TTZ5 19234723
    6392 3cfx:B (1.6) BS01 MG ? GO:1901359 ... Q8TTZ5 19234723
    6393 3cfx:B (1.6) BS02 MG ? GO:1901359 ... Q8TTZ5 19234723
    6394 3cg4:A (1.61) BS01 MG ? GO:0000160 ... Q2FQ04 N/A
    6395 3chl:A (1.9) BS01 MG ? GO:0005509 ... Q9NFS4 19046974
    6396 3chm:A (1.5) BS01 MG ? N/A Q94JU3 18854373
    6397 3cif:B (2.0) BS03 MG 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    6398 3cif:D (2.0) BS03 MG 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    6399 3cik:A (2.75) BS01 MG 2.7.11.15 GO:0001664 ... P25098 20128603
    6400 3cin:A (1.7) BS01 MG 5.5.1.4 GO:0000166 ... Q9X1D6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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