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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1g0u:I (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    402 1g0u:K (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    403 1g0u:L (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    404 1g0u:L (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    405 1g0u:N (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    406 1g0u:U (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    407 1g0u:U (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    408 1g0u:V (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    409 1g0u:W (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    410 1g0u:Y (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    411 1g0u:Z (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    412 1g0u:Z (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    413 1g17:A (2.0) BS01 MG ? GO:0003924 ... P07560 11099382
    414 1g17:B (2.0) BS01 MG ? GO:0003924 ... P07560 11099382
    415 1g21:E (3.0) BS01 MG 1.18.6.1 GO:0005524 ... P00459 11170380
    416 1g21:G (3.0) BS03 MG 1.18.6.1 GO:0005524 ... P00459 11170380
    417 1g29:1 (1.9) BS01 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    418 1g29:1 (1.9) BS02 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    419 1g29:1 (1.9) BS04 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    420 1g29:2 (1.9) BS01 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    421 1g29:2 (1.9) BS02 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    422 1g29:2 (1.9) BS03 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    423 1g29:2 (1.9) BS04 MG 7.5.2.1 GO:0005524 ... Q9YGA6 11080142
    424 1g3u:A (1.95) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11469859
    425 1g4c:B (1.65) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    426 1g4c:B (1.65) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    427 1g4p:A (2.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    428 1g4p:B (2.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    429 1g4s:A (1.7) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    430 1g4s:B (1.7) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    431 1g4t:A (1.55) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    432 1g4t:B (1.55) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    433 1g4u:R (2.3) BS01 MG 3.6.5.2 GO:0001764 ... P63000 11163217
    434 1g5t:A (1.8) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    435 1g64:A (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    436 1g64:B (2.1) BS01 MG 2.5.1.17 GO:0005524 ... P31570 11148030
    437 1g65:G (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P21243 N/A
    438 1g65:H (2.25) BS01 MG 3.4.25.1 GO:0004298 ... P25043 N/A
    439 1g65:I (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P25451 N/A
    440 1g65:K (2.25) BS02 MG 3.4.25.1 GO:0004298 ... P30656 N/A
    441 1g65:L (2.25) BS02 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    442 1g65:L (2.25) BS03 MG 3.4.25.1 GO:0000502 ... P23724 N/A
    443 1g65:N (2.25) BS01 MG 3.4.25.1 GO:0000502 ... P38624 N/A
    444 1g67:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    445 1g67:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    446 1g69:A (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    447 1g69:B (1.5) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    448 1g6c:A (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    449 1g6c:B (1.4) BS01 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    450 1g6c:B (1.4) BS02 MG 2.5.1.3 GO:0000287 ... P39594 11513589
    451 1g8f:A (1.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    452 1g8g:A (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    453 1g8g:B (2.6) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    454 1g8h:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    455 1g8h:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11157739
    456 1g8x:A (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799    		 11226153
    457 1g8x:B (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799    		 11226153
    458 1g97:A (1.96) BS01 MG 2.3.1.157
    2.7.7.23    		 GO:0000287 ... Q97R46 11124906
    459 1g9g:A (1.9) BS02 MG 3.2.1.4 GO:0004553 ... P37698 18035374
    460 1g9x:B (2.6) BS01 MG ? GO:0005524 ... Q58663 12554933
    461 1gag:A (2.7) BS02 MG 2.7.10.1 GO:0004672 ... P06213 11135668
    462 1gfi:A (2.2) BS01 MG ? GO:0000287 ... P10824 8073283
    463 1ghz:A (1.39) BS02 MG 3.4.21.4 GO:0004175 ... P00760 11292354
    464 1gi0:A (1.42) BS02 MG 3.4.21.4 GO:0004175 ... P00760 11292354
    465 1gia:A (2.0) BS01 MG ? GO:0000287 ... P10824 8073283
    466 1gil:A (2.3) BS01 MG ? GO:0000287 ... P10824 8073283
    467 1gim:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9000627
    468 1gin:A (2.8) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9000627
    469 1gk8:A (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    470 1gk8:C (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    471 1gk8:E (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    472 1gk8:G (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    473 1gkb:A (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    474 1gkb:B (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    475 1gnp:A (2.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 7473708
    476 1gnq:A (2.5) BS01 MG 3.6.5.2 GO:0003924 ... P01112 7473708
    477 1gnr:A (1.85) BS01 MG 3.6.5.2 GO:0003924 ... P01112 7473708
    478 1gol:A (2.8) BS01 MG 2.7.11.24 GO:0000165 ... P63086 8639522
    479 1gq9:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    480 1gq9:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    481 1gqc:A (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    482 1gqc:B (2.6) BS01 MG 2.7.7.38 GO:0005737 ... P42216 11802716
    483 1gqy:A (1.8) BS02 MG 6.3.2.8 GO:0005524 ... P45066 N/A
    484 1gqy:B (1.8) BS02 MG 6.3.2.8 GO:0005524 ... P45066 N/A
    485 1grn:A (2.1) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9846874
    486 1gro:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 8745407
    487 1grp:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 8745407
    488 1grv:A (2.9) BS01 MG 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    489 1grv:B (2.9) BS01 MG 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    490 1gs6:X (2.2) BS03 MG 1.7.2.1 GO:0005507 ... O68601 11829502
    491 1gsa:A (2.0) BS01 MG 6.3.2.3 GO:0000287 ... P04425 8810901
    492 1gsa:A (2.0) BS02 MG 6.3.2.3 GO:0000287 ... P04425 8810901
    493 1gsi:A (1.6) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    494 1gtv:A (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    495 1gtv:A (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    496 1gtv:B (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    497 1gtv:B (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    498 1gua:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P62834 8756332
    499 1gwn:A (2.1) BS02 MG ? GO:0003924 ... P61588 12009891
    500 1gwn:C (2.1) BS02 MG ? GO:0003924 ... P61588 12009891
    501 1gxb:A (2.65) BS01 MG 2.4.2.18 GO:0000162 ... P50384 12093726
    502 1gxb:C (2.65) BS01 MG 2.4.2.18 GO:0000162 ... P50384 12093726
    503 1gxb:D (2.65) BS02 MG 2.4.2.18 GO:0000162 ... P50384 12093726
    504 1gy3:A (2.7) BS03 MG 2.7.11.22 GO:0000082 ... P24941 12044161
    505 1gy3:C (2.7) BS03 MG 2.7.11.22 GO:0000082 ... P24941 12044161
    506 1h1d:A (2.0) BS01 MG 2.1.1.6 GO:0000287 ... P22734 12237326
    507 1h1l:B (1.9) BS02 MG 1.18.6.1 GO:0005524 ... P09772 12133839
    508 1h1l:B (1.9) BS03 MG 1.18.6.1 GO:0005524 ... P09772 12133839
    509 1h1l:D (1.9) BS01 MG 1.18.6.1 GO:0005524 ... P09772 12133839
    510 1h1l:D (1.9) BS02 MG 1.18.6.1 GO:0005524 ... P09772 12133839
    511 1h2a:L (1.8) BS01 MG 1.12.2.1 GO:0008901 ... P21852 9438867
    512 1h2r:L (1.4) BS02 MG 1.12.2.1 GO:0008901 ... P21852 10378274
    513 1h3i:B (2.1) BS01 MG 2.1.1.364 GO:0005694 ... Q8WTS6 12372304
    514 1h56:A (3.0) BS01 MG 3.1.21.4 GO:0003677 ... P23657 12888347
    515 1h56:B (3.0) BS01 MG 3.1.21.4 GO:0003677 ... P23657 12888347
    516 1h65:A (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    517 1h65:B (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    518 1h65:C (2.0) BS03 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    519 1h7q:A (2.0) BS02 MG ? GO:0016757 ... P39621 11733986
    520 1h7u:B (2.7) BS01 MG 3.1.-.- GO:0005524 ... P54278 11574484
    521 1hbn:A (1.16) BS04 MG 2.8.4.1 GO:0005737 ... P11558 11491299
    522 1hbn:F (1.16) BS02 MG 2.8.4.1 GO:0005737 ... P11562 11491299
    523 1hbu:A (1.9) BS04 MG 2.8.4.1 GO:0005737 ... P11558 11491299
    524 1hck:A (1.9) BS01 MG 2.7.11.22 GO:0000082 ... P24941 8917641
    525 1he1:C (2.0) BS03 MG 3.6.5.2 GO:0001764 ... P63000 11135665
    526 1he1:D (2.0) BS03 MG 3.6.5.2 GO:0001764 ... P63000 11135665
    527 1he8:B (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11136978
    528 1hh4:A (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    529 1hh4:B (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    530 1hi8:A (2.5) BS01 MG 2.7.7.48 GO:0000166 ... P11124 11242087
    531 1hi8:B (2.5) BS01 MG 2.7.7.48 GO:0000166 ... P11124 11242087
    532 1hjk:A (2.3) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9253408
    533 1hjk:B (2.3) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9253408
    534 1hmv:A (3.2) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 7532306
    535 1hmv:C (3.2) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 7532306
    536 1hmv:E (3.2) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 7532306
    537 1hmv:G (3.2) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 7532306
    538 1hn1:A (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    539 1hn1:A (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    540 1hn1:B (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    541 1hn1:B (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    542 1hn1:C (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    543 1hn1:C (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    544 1hn1:D (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    545 1hn1:D (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11518535
    546 1hnw:D (3.4) BS02 MG ? GO:0003723 ... P80373 11163189
    547 1hnw:L (3.4) BS02 MG ? GO:0000049 ... Q5SHN3 11163189
    548 1hnx:D (3.4) BS02 MG ? GO:0003723 ... P80373 11163189
    549 1hnz:D (3.3) BS02 MG ? GO:0003723 ... P80373 11163189
    550 1hq2:A (1.25) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    551 1hq2:A (1.25) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    552 1hqm:D (3.3) BS01 MG 2.7.7.6 GO:0003677 ... Q9KWU6 11158566
    553 1htw:A (1.7) BS01 MG ? GO:0002949 ... P44492 12112691
    554 1htw:B (1.7) BS01 MG ? GO:0002949 ... P44492 12112691
    555 1htw:C (1.7) BS01 MG ? GO:0002949 ... P44492 12112691
    556 1huj:A (2.1) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    557 1huj:B (2.1) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    558 1huk:A (2.2) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    559 1huk:B (2.2) BS01 MG 3.6.1.1 GO:0000287 ... P00817 N/A
    560 1huq:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P35278 11278565
    561 1hur:A (2.0) BS01 MG 3.6.5.2 GO:0000139 ... P84077 7990966
    562 1hur:B (2.0) BS01 MG 3.6.5.2 GO:0000139 ... P84077 7990966
    563 1hx9:A (3.5) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    564 1hx9:A (3.5) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    565 1hxa:A (2.32) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    566 1hxa:A (2.32) BS02 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    567 1hxg:A (2.9) BS01 MG 4.2.3.61 GO:0000287 ... Q40577 N/A
    568 1hyo:A (1.3) BS01 MG 3.7.1.2 GO:0003824 ... P35505 11154690
    569 1hyo:B (1.3) BS01 MG 3.7.1.2 GO:0003824 ... P35505 11154690
    570 1i3q:A (3.1) BS03 MG 2.7.7.6 GO:0000428 ... P04050 11313498
    571 1i6h:A (3.3) BS03 MG 2.7.7.6 GO:0000428 ... P04050 11313499
    572 1i6v:D (3.3) BS01 MG 2.7.7.6 GO:0003677 ... Q9KWU6 11290327
    573 1i7q:A (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    574 1i7q:C (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    575 1i94:D (3.2) BS02 MG ? GO:0003723 ... P80373 11296217
    576 1i94:D (3.2) BS03 MG ? GO:0003723 ... P80373 11296217
    577 1i94:E (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 11296217
    578 1i94:L (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 11296217
    579 1i94:L (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 11296217
    580 1i94:L (3.2) BS04 MG ? GO:0000049 ... Q5SHN3 11296217
    581 1i94:P (3.2) BS02 MG ? GO:0003735 ... Q5SJH3 11296217
    582 1i94:Q (3.2) BS02 MG ? GO:0003735 ... P0DOY7 11296217
    583 1i94:Q (3.2) BS03 MG ? GO:0003735 ... P0DOY7 11296217
    584 1i94:T (3.2) BS02 MG ? GO:0003723 ... P80380 11296217
    585 1i94:T (3.2) BS03 MG ? GO:0003723 ... P80380 11296217
    586 1i94:T (3.2) BS04 MG ? GO:0003723 ... P80380 11296217
    587 1ibk:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    588 1ibl:D (3.11) BS02 MG ? GO:0003723 ... P80373 11340196
    589 1ibl:J (3.11) BS02 MG ? GO:0000049 ... Q5SHN7 11340196
    590 1ibl:L (3.11) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    591 1ibm:D (3.31) BS02 MG ? GO:0003723 ... P80373 11340196
    592 1ibm:L (3.31) BS02 MG ? GO:0000049 ... Q5SHN3 11340196
    593 1ibr:A (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 10367892
    594 1ibr:C (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 10367892
    595 1id0:A (1.6) BS01 MG 2.7.13.3
    3.1.3.-    		 GO:0016310 ... P23837 11493605
    596 1idc:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... P08200 7761851
    597 1ido:A (1.7) BS01 MG ? N/A P11215 7867070
    598 1ig5:A (1.5) BS01 MG ? GO:0005499 ... P02633 9194174
    599 1ihu:A (2.15) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    600 1ii0:A (2.4) BS01 MG 7.3.2.7 GO:0005524 ... P08690 11395509
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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