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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49601 9b00:2q (2.8) BS02 MG N/A N/A P0DOY7 39019034
    49602 9b03:C (2.95) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49603 9b0k:C (3.03) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49604 9b20:A (1.55) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49605 9b20:B (1.55) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49606 9b20:B (1.55) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49607 9b21:A (1.6) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49608 9b21:A (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49609 9b21:B (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49610 9b21:B (1.6) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49611 9b22:A (1.3) BS01 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49612 9b22:A (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49613 9b22:B (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49614 9b22:B (1.3) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    49615 9b27:C (3.51) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49616 9b3d:C (3.41) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49617 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    49618 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    49619 9b8t:A (2.95) BS04 MG N/A N/A Q9Y5S4 39245668
    49620 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    49621 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    49622 9bfy:B (1.26) BS02 MG 3.6.5.2 N/A P01116 N/A
    49623 9bg1:A (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    49624 9bg1:B (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    49625 9bkd:f (2.6) BS02 MG N/A N/A P62269 39117603
    49626 9c0j:A (3.17) BS03 MG N/A N/A A0AA43TDM1 39208082
    49627 9c9m:A (2.01) BS04 MG N/A N/A P12497 39066328
    49628 9c9m:A (2.01) BS05 MG N/A N/A P12497 39066328
    49629 9c9m:I (2.01) BS04 MG N/A N/A P12497 39066328
    49630 9c9m:I (2.01) BS05 MG N/A N/A P12497 39066328
    49631 9cc0:A (3.31) BS03 MG N/A N/A P36776 38979310
    49632 9cc0:B (3.31) BS02 MG N/A N/A P36776 38979310
    49633 9cc0:C (3.31) BS03 MG N/A N/A P36776 38979310
    49634 9cc3:D (3.23) BS02 MG N/A N/A P36776 38979310
    49635 9cev:P (3.26) BS04 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49636 9cev:P (3.26) BS05 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49637 9cew:P (2.88) BS06 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49638 9cew:P (2.88) BS07 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49639 9cex:P (3.27) BS07 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49640 9cex:P (3.27) BS08 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49641 9cey:P (3.22) BS04 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49642 9cey:P (3.22) BS05 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49643 9cez:P (3.41) BS04 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49644 9cez:P (3.41) BS05 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    49645 9cf2:P (3.15) BS07 MG N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    49646 9cf3:P (3.2) BS05 MG N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    49647 9chw:A (2.16) BS04 MG N/A N/A Q9Y253 39259676
    49648 9chw:A (2.16) BS05 MG N/A N/A Q9Y253 39259676
    49649 9ci9:A (2.09) BS04 MG N/A N/A Q9Y253 39259676
    49650 9ci9:A (2.09) BS05 MG N/A N/A Q9Y253 39259676
    49651 9cih:A (2.15) BS04 MG N/A N/A Q9Y253 39259676
    49652 9cih:A (2.15) BS05 MG N/A N/A Q9Y253 39259676
    49653 9cj9:A (2.98) BS04 MG N/A N/A Q9Y253 39259676
    49654 9cj9:A (2.98) BS05 MG N/A N/A Q9Y253 39259676
    49655 9csi:A (2.8) BS02 MG N/A N/A A0A6F8TGG1 39172133
    49656 9d8s:A (2.12) BS04 MG N/A N/A A3FQ16 N/A
    49657 9d8s:A (2.12) BS05 MG N/A N/A A3FQ16 N/A
    49658 9em1:A (1.5) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    49659 9eoc:B (3.3) BS01 MG ? GO:0005515 ... Q96SY0 38823386
    49660 9etk:A (1.48) BS02 MG N/A N/A A0A0H5Y1H1 N/A
    49661 9etk:A (1.48) BS03 MG N/A N/A A0A0H5Y1H1 N/A
    49662 9ev3:A (1.219) BS03 MG N/A N/A Q8NMG5 39080980
    49663 9ev5:A (1.863) BS02 MG N/A N/A Q8NMG5 39080980
    49664 9ev5:B (1.863) BS03 MG N/A N/A Q8NMG5 39080980
    49665 9ev5:C (1.863) BS02 MG N/A N/A Q8NMG5 39080980
    49666 9ev5:D (1.863) BS03 MG N/A N/A Q8NMG5 39080980
    49667 9ev6:A (1.891) BS03 MG N/A N/A Q8NMG5 39080980
    49668 9ev6:B (1.891) BS04 MG N/A N/A Q8NMG5 39080980
    49669 9ev6:C (1.891) BS03 MG N/A N/A Q8NMG5 39080980
    49670 9ev6:D (1.891) BS04 MG N/A N/A Q8NMG5 39080980
    49671 9evv:A (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    49672 9evv:B (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    49673 9evv:C (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    49674 9evv:D (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    49675 9ezl:A (2.97) BS02 MG N/A N/A I3NX86 39109746
    49676 9ezl:B (2.97) BS02 MG N/A N/A I3NX86 39109746
    49677 9ezl:C (2.97) BS02 MG N/A N/A I3NX86 39109746
    49678 9ezl:D (2.97) BS02 MG N/A N/A I3NX86 39109746
    49679 9ezl:E (2.97) BS02 MG N/A N/A I3NX86 39109746
    49680 9ezl:F (2.97) BS02 MG N/A N/A I3NX86 39109746
    49681 9ezl:G (2.97) BS02 MG N/A N/A I3NX86 39109746
    49682 9ezl:H (2.97) BS02 MG N/A N/A I3NX86 39109746
    49683 9f2r:B (1.959) BS03 MG N/A N/A H6QM91 N/A
    49684 9f37:B (1.905) BS05 MG N/A N/A H6QM91 N/A
    49685 9f37:B (1.905) BS06 MG N/A N/A H6QM91 N/A
    49686 9f6c:A (2.33) BS01 MG N/A N/A Q9BE39 39196032
    49687 9f6c:B (2.33) BS01 MG N/A N/A Q9BE39 39196032
    49688 9f6d:A (3.6) BS05 MG N/A N/A Q07864 39112807
    49689 9f99:A (2.803) BS02 MG N/A N/A Q96NY9 39015284
    49690 9f99:A (2.803) BS03 MG N/A N/A Q96NY9 39015284
    49691 9f99:C (2.803) BS02 MG N/A N/A Q96NY9 39015284
    49692 9f99:C (2.803) BS03 MG N/A N/A Q96NY9 39015284
    49693 9f99:E (2.803) BS03 MG N/A N/A Q96NY9 39015284
    49694 9f99:E (2.803) BS04 MG N/A N/A Q96NY9 39015284
    49695 9f99:G (2.803) BS03 MG N/A N/A Q96NY9 39015284
    49696 9f9a:A (2.911) BS02 MG N/A N/A Q96NY9 39015284
    49697 9f9a:A (2.911) BS03 MG N/A N/A Q96NY9 39015284
    49698 9f9a:C (2.911) BS02 MG N/A N/A Q96NY9 39015284
    49699 9f9a:C (2.911) BS03 MG N/A N/A Q96NY9 39015284
    49700 9f9a:E (2.911) BS03 MG N/A N/A Q96NY9 39015284
    49701 9f9a:E (2.911) BS04 MG N/A N/A Q96NY9 39015284
    49702 9f9a:G (2.911) BS03 MG N/A N/A Q96NY9 39015284
    49703 9f9a:G (2.911) BS04 MG N/A N/A Q96NY9 39015284
    49704 9f9k:A (2.728) BS01 MG N/A N/A Q96NY9 39015284
    49705 9f9l:A (2.02) BS01 MG N/A N/A Q96NY9 39015284
    49706 9f9l:C (2.02) BS01 MG N/A N/A Q96NY9 39015284
    49707 9f9m:A (2.469) BS01 MG N/A N/A Q96NY9 39015284
    49708 9f9m:A (2.469) BS02 MG N/A N/A Q96NY9 39015284
    49709 9f9m:C (2.469) BS01 MG N/A N/A Q96NY9 39015284
    49710 9fjm:D (3.65) BS04 MG N/A N/A P60709 N/A
    49711 9fju:E (3.84) BS01 MG N/A N/A P00639 N/A
    49712 9fju:E (3.84) BS02 MG N/A N/A P00639 N/A
    49713 9fjy:E (3.79) BS01 MG N/A N/A P00639 N/A
    49714 9fjy:E (3.79) BS02 MG N/A N/A P00639 N/A
    49715 9fjy:F (3.79) BS01 MG N/A N/A P00639 N/A
    49716 9fjy:F (3.79) BS02 MG N/A N/A P00639 N/A
    49717 9fqa:A (1.47) BS02 MG N/A N/A P0DTC1 39146284
    49718 9fst:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    49719 9fst:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    49720 9fst:K (2.75) BS02 MG N/A N/A P30656 N/A
    49721 9fst:N (2.75) BS02 MG N/A N/A P28065
    P38624    		 N/A
    49722 9fst:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    49723 9fst:Y (2.75) BS02 MG N/A N/A P30656 N/A
    49724 9fst:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    49725 9fsv:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    49726 9fsv:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    49727 9fsv:K (2.75) BS01 MG N/A N/A P30656 N/A
    49728 9fsv:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    49729 9fsv:V (2.75) BS01 MG N/A N/A P25043
    P40306    		 N/A
    49730 9fsv:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    49731 9fsv:Y (2.75) BS01 MG N/A N/A P30656 N/A
    49732 9fsv:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    49733 9ft0:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    49734 9ft0:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    49735 9ft0:K (2.75) BS01 MG N/A N/A P30656 N/A
    49736 9ft0:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    49737 9ft0:V (2.75) BS01 MG N/A N/A P25043 N/A
    49738 9ft0:Y (2.75) BS01 MG N/A N/A P30656 N/A
    49739 9ft1:G (2.6) BS01 MG N/A GO:0000502 ... P21243 N/A
    49740 9ft1:K (2.6) BS01 MG N/A N/A P30656 N/A
    49741 9ft1:Y (2.6) BS01 MG N/A N/A P30656 N/A
    49742 9fvt:A (1.49) BS01 MG N/A N/A N/A N/A
    49743 9fvt:B (1.49) BS01 MG N/A N/A N/A N/A
    49744 9fvt:C (1.49) BS01 MG N/A N/A N/A N/A
    49745 9fvt:D (1.49) BS01 MG N/A N/A N/A N/A
    49746 9fx6:B (2.227) BS01 MG N/A N/A P0DTC1 39052318
    49747 9fx7:A (2.282) BS01 MG N/A N/A P0DTD1 39052318
    49748 9fx7:B (2.282) BS01 MG N/A N/A P0DTD1 39052318
    49749 9fz4:B (2.44) BS03 MG N/A N/A P0DTD1 N/A
    49750 9gd1:W (4.0) BS05 MG N/A N/A P32657 39270644
    49751 9gd3:W (3.0) BS05 MG N/A N/A P32657 39270644
    49752 9ij6:C (2.4) BS02 MG N/A GO:0000166 ... A0A059ZTK9 N/A
    49753 9imj:A (2.8) BS01 MG N/A N/A A0A346FJ89 N/A
    49754 9iuy:A (1.51) BS01 MG N/A N/A P09528 N/A
    49755 9iuy:B (1.51) BS01 MG N/A N/A P09528 N/A
    49756 9iuy:C (1.51) BS01 MG N/A N/A P09528 N/A
    49757 9iuy:D (1.51) BS01 MG N/A N/A P09528 N/A
    49758 9iuy:E (1.51) BS01 MG N/A N/A P09528 N/A
    49759 9iuy:F (1.51) BS01 MG N/A N/A P09528 N/A
    49760 9iuy:G (1.51) BS01 MG N/A N/A P09528 N/A
    49761 9iuy:H (1.51) BS01 MG N/A N/A P09528 N/A
    49762 9iuy:I (1.51) BS01 MG N/A N/A P09528 N/A
    49763 9iuy:J (1.51) BS01 MG N/A N/A P09528 N/A
    49764 9iuy:K (1.51) BS01 MG N/A N/A P09528 N/A
    49765 9iuy:L (1.51) BS01 MG N/A N/A P09528 N/A
    49766 9iuy:M (1.51) BS01 MG N/A N/A P09528 N/A
    49767 9iuy:N (1.51) BS01 MG N/A N/A P09528 N/A
    49768 9iuy:O (1.51) BS01 MG N/A N/A P09528 N/A
    49769 9iuy:P (1.51) BS01 MG N/A N/A P09528 N/A
    49770 9iuy:Q (1.51) BS01 MG N/A N/A P09528 N/A
    49771 9iuy:R (1.51) BS01 MG N/A N/A P09528 N/A
    49772 9iuy:S (1.51) BS01 MG N/A N/A P09528 N/A
    49773 9iuy:T (1.51) BS01 MG N/A N/A P09528 N/A
    49774 9iuy:U (1.51) BS01 MG N/A N/A P09528 N/A
    49775 9iuy:V (1.51) BS01 MG N/A N/A P09528 N/A
    49776 9iuy:W (1.51) BS01 MG N/A N/A P09528 N/A
    49777 9iuy:X (1.51) BS01 MG N/A N/A P09528 N/A
    49778 9iy0:H (1.97) BS01 MG N/A N/A N/A N/A
    49779 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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