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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49401 8yla:A (1.3) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    49402 8yla:A (1.3) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    49403 8yla:B (1.3) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    49404 8yla:B (1.3) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    49405 8yo4:C (3.2) BS03 MG N/A N/A N/A N/A
    49406 8yo4:D (3.2) BS03 MG N/A N/A N/A N/A
    49407 8yoo:LA (2.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    49408 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    49409 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    49410 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    49411 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    49412 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    49413 8yp3:A (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    49414 8yp3:B (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    49415 8yp3:C (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    49416 8yp3:D (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    49417 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    49418 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    49419 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49420 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49421 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49422 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49423 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49424 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49425 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49426 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49427 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49428 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49429 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49430 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    49431 8z1r:A (1.82) BS01 MG N/A N/A G5EH03 N/A
    49432 8z1r:B (1.82) BS01 MG N/A N/A G5EH03 N/A
    49433 8z8o:A (1.71) BS01 MG N/A N/A A0A077EWA5 N/A
    49434 8z8o:B (1.71) BS01 MG N/A N/A A0A077EWA5 N/A
    49435 8z8o:C (1.71) BS01 MG N/A N/A A0A077EWA5 N/A
    49436 8z8o:D (1.71) BS01 MG N/A N/A A0A077EWA5 N/A
    49437 8z8p:A (1.68) BS01 MG N/A N/A A0A077EWA5 N/A
    49438 8z8p:B (1.68) BS01 MG N/A N/A A0A077EWA5 N/A
    49439 8z8p:C (1.68) BS01 MG N/A N/A A0A077EWA5 N/A
    49440 8z8p:D (1.68) BS01 MG N/A N/A A0A077EWA5 N/A
    49441 8z8r:A (1.79) BS01 MG N/A N/A A0A077EWA5 N/A
    49442 8z8r:B (1.79) BS01 MG N/A N/A A0A077EWA5 N/A
    49443 8z8r:C (1.79) BS01 MG N/A N/A A0A077EWA5 N/A
    49444 8z8r:D (1.79) BS01 MG N/A N/A A0A077EWA5 N/A
    49445 8z8s:A (1.94) BS01 MG N/A N/A A0A077EWA5 N/A
    49446 8z8s:B (1.94) BS01 MG N/A N/A A0A077EWA5 N/A
    49447 8zfw:A (2.18) BS01 MG N/A N/A A0A077EWA5 N/A
    49448 8zfw:B (2.18) BS02 MG N/A N/A A0A077EWA5 N/A
    49449 8zhy:B (2.7) BS01 MG N/A N/A B7WRJ7 N/A
    49450 8zhy:D (2.7) BS02 MG N/A N/A B7WRJ7 N/A
    49451 8zj2:D (4.66) BS01 MG N/A GO:0003924 ... P84095 38857861
    49452 8zj3:A (2.9) BS02 MG N/A N/A B7WRJ7 N/A
    49453 8zj3:A (2.9) BS03 MG N/A N/A B7WRJ7 N/A
    49454 8zj3:B (2.9) BS01 MG N/A N/A B7WRJ7 N/A
    49455 8zj7:A (2.65) BS01 MG N/A N/A B7WRJ7 N/A
    49456 8zj7:C (2.65) BS02 MG N/A N/A B7WRJ7 N/A
    49457 8zjf:B (2.7) BS01 MG ? N/A P26010 38781659
    49458 8zkc:A (2.85) BS01 MG ? GO:0005524 ... P0AF08 38797154
    49459 8zkd:A (2.05) BS02 MG N/A N/A Q04912 N/A
    49460 8zly:A (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49461 8zly:B (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49462 8zly:C (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49463 8zly:D (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49464 8zly:E (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49465 8zly:F (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49466 8zly:G (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49467 8zly:H (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    49468 9ash:A (2.58) BS05 MG N/A N/A L0CEJ3 38989619
    49469 9ash:A (2.58) BS06 MG N/A N/A L0CEJ3 38989619
    49470 9ash:A (2.58) BS07 MG N/A N/A L0CEJ3 38989619
    49471 9asi:A (2.79) BS04 MG N/A N/A L0CEJ3 38989619
    49472 9ax6:A (1.65) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38593348
    49473 9ax6:B (1.65) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38593348
    49474 9ax8:z (2.6) BS04 MG N/A N/A A0A376TVY0 39222680
    49475 9axh:A (2.81) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49476 9axh:B (2.81) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49477 9axh:C (2.81) BS02 MG 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    49478 9axh:D (2.81) BS03 MG 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    49479 9axm:A (2.42) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49480 9axm:B (2.42) BS02 MG 2.7.11.1 GO:0004672 ... P10398 38588399
    49481 9axx:A (2.07) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49482 9axx:C (2.07) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49483 9axy:A (3.6) BS02 MG 2.7.11.1 GO:0004672 ... P15056 38588399
    49484 9axy:B (3.6) BS03 MG 2.7.12.2 GO:0000165 ... Q02750 38588399
    49485 9ay7:A (2.41) BS02 MG 2.7.11.1 GO:0004672 ... P04049 38588399
    49486 9ay7:B (2.41) BS03 MG 2.7.12.2 GO:0000165 ... Q02750 38588399
    49487 9aya:B (2.59) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49488 9aya:D (2.59) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 38588399
    49489 9azq:C (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49490 9azq:E (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49491 9azq:I (3.82) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    49492 9b00:10 (2.8) BS03 MG N/A N/A P60493 39019034
    49493 9b00:10 (2.8) BS04 MG N/A N/A P60493 39019034
    49494 9b00:11 (2.8) BS03 MG N/A N/A P60494 39019034
    49495 9b00:11 (2.8) BS04 MG N/A N/A P60494 39019034
    49496 9b00:13 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    49497 9b00:13 (2.8) BS04 MG N/A N/A Q5SHQ6 39019034
    49498 9b00:15 (2.8) BS02 MG N/A N/A P80339 39019034
    49499 9b00:16 (2.8) BS02 MG N/A N/A P35871 39019034
    49500 9b00:17 (2.8) BS02 MG N/A N/A P80340 39019034
    49501 9b00:17 (2.8) BS03 MG N/A N/A P80340 39019034
    49502 9b00:18 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    49503 9b00:18 (2.8) BS03 MG N/A N/A Q5SKU1 39019034
    49504 9b00:18 (2.8) BS04 MG N/A N/A Q5SKU1 39019034
    49505 9b00:1D (2.8) BS03 MG N/A N/A P60405 39019034
    49506 9b00:1D (2.8) BS04 MG N/A N/A P60405 39019034
    49507 9b00:1D (2.8) BS05 MG N/A N/A P60405 39019034
    49508 9b00:1D (2.8) BS06 MG N/A N/A P60405 39019034
    49509 9b00:1D (2.8) BS07 MG N/A N/A P60405 39019034
    49510 9b00:1D (2.8) BS08 MG N/A N/A P60405 39019034
    49511 9b00:1D (2.8) BS09 MG N/A N/A P60405 39019034
    49512 9b00:1D (2.8) BS10 MG N/A N/A P60405 39019034
    49513 9b00:1D (2.8) BS11 MG N/A N/A P60405 39019034
    49514 9b00:1D (2.8) BS12 MG N/A N/A P60405 39019034
    49515 9b00:1D (2.8) BS13 MG N/A N/A P60405 39019034
    49516 9b00:1E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    49517 9b00:1E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    49518 9b00:1E (2.8) BS04 MG N/A N/A Q5SHN8 39019034
    49519 9b00:1E (2.8) BS05 MG N/A N/A Q5SHN8 39019034
    49520 9b00:1F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    49521 9b00:1F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    49522 9b00:1F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    49523 9b00:1F (2.8) BS05 MG N/A N/A Q5SHN9 39019034
    49524 9b00:1F (2.8) BS06 MG N/A N/A Q5SHN9 39019034
    49525 9b00:1F (2.8) BS07 MG N/A N/A Q5SHN9 39019034
    49526 9b00:1F (2.8) BS08 MG N/A N/A Q5SHN9 39019034
    49527 9b00:1F (2.8) BS09 MG N/A N/A Q5SHN9 39019034
    49528 9b00:1F (2.8) BS10 MG N/A N/A Q5SHN9 39019034
    49529 9b00:1G (2.8) BS04 MG N/A N/A Q5SHQ0 39019034
    49530 9b00:1N (2.8) BS02 MG N/A N/A P60488 39019034
    49531 9b00:1N (2.8) BS03 MG N/A N/A P60488 39019034
    49532 9b00:1N (2.8) BS04 MG N/A N/A P60488 39019034
    49533 9b00:1P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    49534 9b00:1P (2.8) BS03 MG N/A N/A Q5SHQ7 39019034
    49535 9b00:1P (2.8) BS04 MG N/A N/A Q5SHQ7 39019034
    49536 9b00:1P (2.8) BS05 MG N/A N/A Q5SHQ7 39019034
    49537 9b00:1P (2.8) BS06 MG N/A N/A Q5SHQ7 39019034
    49538 9b00:1Q (2.8) BS04 MG N/A N/A P60489 39019034
    49539 9b00:1Q (2.8) BS05 MG N/A N/A P60489 39019034
    49540 9b00:1Q (2.8) BS06 MG N/A N/A P60489 39019034
    49541 9b00:1R (2.8) BS02 MG N/A N/A Q9Z9H5 39019034
    49542 9b00:1R (2.8) BS03 MG N/A N/A Q9Z9H5 39019034
    49543 9b00:1S (2.8) BS03 MG N/A N/A Q5SHQ4 39019034
    49544 9b00:1S (2.8) BS04 MG N/A N/A Q5SHQ4 39019034
    49545 9b00:1U (2.8) BS02 MG N/A N/A P60491 39019034
    49546 9b00:1U (2.8) BS03 MG N/A N/A P60491 39019034
    49547 9b00:1U (2.8) BS04 MG N/A N/A P60491 39019034
    49548 9b00:1U (2.8) BS05 MG N/A N/A P60491 39019034
    49549 9b00:1U (2.8) BS06 MG N/A N/A P60491 39019034
    49550 9b00:1U (2.8) BS07 MG N/A N/A P60491 39019034
    49551 9b00:1V (2.8) BS02 MG N/A N/A P60492 39019034
    49552 9b00:1V (2.8) BS03 MG N/A N/A P60492 39019034
    49553 9b00:1V (2.8) BS04 MG N/A N/A P60492 39019034
    49554 9b00:1V (2.8) BS05 MG N/A N/A P60492 39019034
    49555 9b00:1V (2.8) BS06 MG N/A N/A P60492 39019034
    49556 9b00:1V (2.8) BS07 MG N/A N/A P60492 39019034
    49557 9b00:1W (2.8) BS02 MG N/A N/A Q5SHP3 39019034
    49558 9b00:1W (2.8) BS03 MG N/A N/A Q5SHP3 39019034
    49559 9b00:1W (2.8) BS04 MG N/A N/A Q5SHP3 39019034
    49560 9b00:1W (2.8) BS05 MG N/A N/A Q5SHP3 39019034
    49561 9b00:1X (2.8) BS02 MG N/A N/A Q5SHP0 39019034
    49562 9b00:1X (2.8) BS03 MG N/A N/A Q5SHP0 39019034
    49563 9b00:1X (2.8) BS04 MG N/A N/A Q5SHP0 39019034
    49564 9b00:1X (2.8) BS05 MG N/A N/A Q5SHP0 39019034
    49565 9b00:1X (2.8) BS06 MG N/A N/A Q5SHP0 39019034
    49566 9b00:1Y (2.8) BS02 MG N/A N/A Q5SHP9 39019034
    49567 9b00:1Z (2.8) BS03 MG N/A N/A Q5SHZ1 39019034
    49568 9b00:1b (2.8) BS02 MG N/A N/A P80371 39019034
    49569 9b00:1k (2.8) BS02 MG N/A N/A P80376 39019034
    49570 9b00:1m (2.8) BS05 MG N/A N/A P80377 39019034
    49571 9b00:1n (2.8) BS02 MG N/A N/A P0DOY6 39019034
    49572 9b00:1t (2.8) BS02 MG N/A N/A P80380 39019034
    49573 9b00:21 (2.8) BS03 MG N/A N/A P60494 39019034
    49574 9b00:23 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    49575 9b00:27 (2.8) BS02 MG N/A N/A P80340 39019034
    49576 9b00:28 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    49577 9b00:2D (2.8) BS03 MG N/A N/A P60405 39019034
    49578 9b00:2D (2.8) BS04 MG N/A N/A P60405 39019034
    49579 9b00:2D (2.8) BS05 MG N/A N/A P60405 39019034
    49580 9b00:2D (2.8) BS06 MG N/A N/A P60405 39019034
    49581 9b00:2E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    49582 9b00:2E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    49583 9b00:2F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    49584 9b00:2F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    49585 9b00:2F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    49586 9b00:2O (2.8) BS03 MG N/A N/A Q5SHP8 39019034
    49587 9b00:2P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    49588 9b00:2Q (2.8) BS04 MG N/A N/A P60489 39019034
    49589 9b00:2T (2.8) BS03 MG N/A N/A P60490 39019034
    49590 9b00:2V (2.8) BS02 MG N/A N/A P60492 39019034
    49591 9b00:2W (2.8) BS02 MG N/A N/A Q5SHP3 39019034
    49592 9b00:2X (2.8) BS02 MG N/A N/A Q5SHP0 39019034
    49593 9b00:2Z (2.8) BS03 MG N/A N/A Q5SHZ1 39019034
    49594 9b00:2d (2.8) BS02 MG N/A N/A P80373 39019034
    49595 9b00:2e (2.8) BS02 MG N/A N/A Q5SHQ5 39019034
    49596 9b00:2f (2.8) BS02 MG N/A N/A Q5SLP8 39019034
    49597 9b00:2j (2.8) BS02 MG N/A N/A Q5SHN7 39019034
    49598 9b00:2k (2.8) BS02 MG N/A N/A P80376 39019034
    49599 9b00:2l (2.8) BS02 MG N/A N/A Q5SHN3 39019034
    49600 9b00:2l (2.8) BS03 MG N/A N/A Q5SHN3 39019034
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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