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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49201 8wd8:B (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    49202 8wd8:B (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    49203 8wd8:B (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    49204 8wdb:D (2.86) BS03 MG N/A N/A I6Y482 N/A
    49205 8wdb:D (2.86) BS04 MG N/A N/A I6Y482 N/A
    49206 8wdg:A (0.99) BS01 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    49207 8wdg:A (0.99) BS02 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    49208 8wdg:A (0.99) BS04 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    49209 8wdh:A (1.7) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    49210 8wdh:A (1.7) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    49211 8wdu:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    49212 8wdv:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    49213 8wej:E (2.79) BS03 MG 3.6.5.2 GO:0001764 ... P63000 38355798
    49214 8wev:A (2.29) BS02 MG N/A N/A A0A3N2H3K2 N/A
    49215 8wew:B (2.5) BS02 MG N/A N/A Q18DH5 N/A
    49216 8wil:A (2.1) BS01 MG 3.6.4.13 GO:0001172 ... A0A7D0QVD8 38296832
    49217 8wim:A (1.84) BS01 MG 3.6.4.13 GO:0003968 ... A0A7D0QVD8 38296832
    49218 8wiv:D (3.41) BS01 MG N/A N/A N/A N/A
    49219 8wiv:M (3.41) BS02 MG N/A N/A N/A N/A
    49220 8wiv:O (3.41) BS02 MG N/A N/A N/A N/A
    49221 8wj3:M (3.36) BS02 MG N/A N/A N/A N/A
    49222 8wj3:O (3.36) BS02 MG N/A N/A N/A N/A
    49223 8wk0:O (3.34) BS02 MG N/A N/A N/A N/A
    49224 8wmy:A (1.91) BS02 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    49225 8wmy:A (1.91) BS03 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    49226 8wmy:B (1.91) BS02 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    49227 8wmy:B (1.91) BS03 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    49228 8wpe:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    49229 8wpf:A (3.0) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    49230 8wpk:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    49231 8wt6:A (2.5) BS05 MG N/A N/A A0A2X3M8B0 38926616
    49232 8wt6:C (2.5) BS05 MG N/A N/A A0A2X3M8B0 38926616
    49233 8wt7:A (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    49234 8wt7:C (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    49235 8wt8:A (2.9) BS06 MG N/A N/A A0A2X3M8B0 38926616
    49236 8wt9:B (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    49237 8wt9:D (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    49238 8wve:A (2.729) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    49239 8wve:B (2.729) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    49240 8wwu:A (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49241 8wwu:B (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49242 8wwu:C (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49243 8wwu:D (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49244 8wwu:E (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49245 8wwu:F (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49246 8wwv:A (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49247 8wwv:B (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49248 8wwv:C (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49249 8wwv:D (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49250 8wwv:E (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49251 8wwv:F (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    49252 8wzc:A (1.925) BS02 MG N/A N/A O15037 39167961
    49253 8wzc:A (1.925) BS03 MG N/A N/A O15037 39167961
    49254 8x1z:A (2.62) BS02 MG N/A N/A P12497 38977798
    49255 8x1z:C (2.62) BS02 MG N/A N/A P12497 38977798
    49256 8x20:C (2.7) BS03 MG N/A N/A P12497 38977798
    49257 8x21:A (2.33) BS03 MG N/A N/A P12497 38977798
    49258 8x21:C (2.33) BS03 MG N/A N/A P12497 38977798
    49259 8x22:A (2.31) BS03 MG N/A N/A P12497 38977798
    49260 8x22:C (2.31) BS03 MG N/A N/A P12497 38977798
    49261 8x2l:B (2.99) BS04 MG 1.-.-.- GO:0005515 ... P04839 38355798
    49262 8x37:B (1.98) BS04 MG 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    49263 8xaw:A (2.73) BS02 MG N/A N/A N/A 38834762
    49264 8xaw:C (2.73) BS05 MG N/A N/A N/A 38834762
    49265 8xaw:D (2.73) BS04 MG N/A N/A N/A 38834762
    49266 8xaw:E (2.73) BS03 MG N/A N/A N/A 38834762
    49267 8xaw:F (2.73) BS02 MG N/A N/A N/A 38834762
    49268 8xax:C (2.92) BS05 MG N/A N/A N/A 38834762
    49269 8xax:E (2.92) BS02 MG N/A N/A N/A 38834762
    49270 8xax:F (2.92) BS02 MG N/A N/A N/A 38834762
    49271 8xay:A (2.81) BS02 MG N/A N/A N/A 38834762
    49272 8xay:D (2.81) BS04 MG N/A N/A N/A 38834762
    49273 8xay:E (2.81) BS03 MG N/A N/A N/A 38834762
    49274 8xay:F (2.81) BS02 MG N/A N/A N/A 38834762
    49275 8xdo:A (1.37) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49276 8xdo:B (1.37) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49277 8xdp:A (1.75) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49278 8xdp:B (1.75) BS02 MG N/A N/A A0A6B9TNK2 N/A
    49279 8xdq:A (1.77) BS01 MG N/A N/A N/A N/A
    49280 8xdq:B (1.77) BS01 MG N/A N/A N/A N/A
    49281 8xdr:A (1.83) BS01 MG N/A N/A N/A N/A
    49282 8xdr:B (1.83) BS01 MG N/A N/A N/A N/A
    49283 8xds:A (1.97) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49284 8xds:B (1.97) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49285 8xdt:A (2.65) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49286 8xdt:B (2.65) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49287 8xdu:A (1.92) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49288 8xdu:B (1.92) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49289 8xdv:A (2.32) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49290 8xdv:B (2.32) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49291 8xdy:A (2.2) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49292 8xdy:B (2.2) BS02 MG N/A N/A A0A6B9TNK2 N/A
    49293 8xe0:A (2.2) BS02 MG N/A N/A A0A6B9TNK2 N/A
    49294 8xe0:B (2.2) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49295 8xe2:A (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49296 8xe2:B (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49297 8xe2:C (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49298 8xe2:D (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    49299 8xe3:A (1.72) BS01 MG N/A N/A A0A077EWA5 N/A
    49300 8xe3:B (1.72) BS01 MG N/A N/A A0A077EWA5 N/A
    49301 8xe4:A (1.96) BS01 MG N/A N/A A0A077EWA5 N/A
    49302 8xe4:B (1.96) BS01 MG N/A N/A A0A077EWA5 N/A
    49303 8xe4:C (1.96) BS02 MG N/A N/A A0A077EWA5 N/A
    49304 8xe4:D (1.96) BS02 MG N/A N/A A0A077EWA5 N/A
    49305 8xe5:A (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    49306 8xe5:B (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    49307 8xe5:C (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    49308 8xe5:D (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    49309 8xf0:C (2.5) BS01 MG N/A N/A N/A 38238241
    49310 8xf0:E (2.5) BS01 MG N/A N/A N/A 38238241
    49311 8xf0:F (2.5) BS01 MG N/A N/A N/A 38238241
    49312 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    49313 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    49314 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    49315 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    49316 8xif:A (1.39) BS01 MG 3.6.4.- N/A P04305 38914567
    49317 8xif:A (1.39) BS02 MG 3.6.4.- N/A P04305 38914567
    49318 8xig:A (1.65) BS01 MG 3.6.4.- N/A A0A7H0DN89 38914567
    49319 8xig:A (1.65) BS02 MG 3.6.4.- N/A A0A7H0DN89 38914567
    49320 8xim:A (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    49321 8xim:B (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    49322 8xim:C (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    49323 8xim:D (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    49324 8xm7:D (4.91) BS01 MG N/A GO:0003924 ... P84095 38857861
    49325 8xmb:A (3.4) BS02 MG N/A GO:0000418 ... Q9LQ02 N/A
    49326 8xmc:A (3.1) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    49327 8xmd:A (3.4) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    49328 8xme:A (3.1) BS04 MG N/A GO:0000418 ... Q9LQ02 N/A
    49329 8xn6:A (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    49330 8xn6:B (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    49331 8xn8:A (1.95) BS02 MG 2.7.10.2 GO:0004672 ... P05480 N/A
    49332 8xom:A (3.05) BS08 MG N/A GO:0001409 ... O15439 38886124
    49333 8xoo:Q (1.84) BS05 MG ? GO:0005524 ... A0A6G5RIJ6 38501868
    49334 8xrf:A (2.94) BS04 MG N/A N/A Q00942 N/A
    49335 8xrf:A (2.94) BS05 MG N/A N/A Q00942 N/A
    49336 8xrf:A (2.94) BS06 MG N/A N/A Q00942 N/A
    49337 8xrf:B (2.94) BS04 MG N/A N/A Q00942 N/A
    49338 8xrf:B (2.94) BS05 MG N/A N/A Q00942 N/A
    49339 8xrf:B (2.94) BS06 MG N/A N/A Q00942 N/A
    49340 8xri:A (2.92) BS04 MG N/A N/A Q00942 N/A
    49341 8xri:A (2.92) BS05 MG N/A N/A Q00942 N/A
    49342 8xri:B (2.92) BS05 MG N/A N/A Q00942 N/A
    49343 8xri:B (2.92) BS06 MG N/A N/A Q00942 N/A
    49344 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    49345 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    49346 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    49347 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    49348 8xsy:Le (3.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    49349 8xsy:Lg (3.0) BS03 MG N/A GO:0002181 ... P49207 38942792
    49350 8xsz:LA (3.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    49351 8xsz:Le (3.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    49352 8xsz:Lg (3.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    49353 8xsz:SI (3.2) BS02 MG N/A GO:0000462 ... P62241 38942792
    49354 8xsz:SI (3.2) BS03 MG N/A GO:0000462 ... P62241 38942792
    49355 8xt0:LB (3.2) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    49356 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    49357 8xw6:A (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49358 8xw6:B (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49359 8xw7:A (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49360 8xw7:B (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49361 8xw8:A (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49362 8xw8:B (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49363 8xw8:C (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49364 8xw8:D (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49365 8xw9:A (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49366 8xw9:B (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    49367 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    49368 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    49369 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    49370 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    49371 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    49372 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    49373 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    49374 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    49375 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    49376 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    49377 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    49378 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    49379 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    49380 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    49381 8yfk:A (2.0) BS02 MG N/A N/A Q8TDY2 39059492
    49382 8yfk:C (2.0) BS02 MG N/A N/A Q8TDY2 39059492
    49383 8yfn:A (2.3) BS02 MG N/A N/A Q8TDY2 39059492
    49384 8yfn:C (2.3) BS02 MG N/A N/A Q8TDY2 39059492
    49385 8yfq:A (3.3) BS06 MG N/A N/A C4R4Y0 39245712
    49386 8yfr:A (3.4) BS03 MG N/A N/A C4R4Y0 39245712
    49387 8yhw:A (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    49388 8yhw:B (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    49389 8yhw:C (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    49390 8yhw:D (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    49391 8yk9:B (3.4) BS02 MG N/A N/A Q981B4 39077943
    49392 8yl9:A (2.75) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49393 8yl9:A (2.75) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49394 8yl9:A (2.75) BS03 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49395 8yl9:B (2.75) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49396 8yl9:B (2.75) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49397 8yl9:B (2.75) BS03 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49398 8yl9:I (2.75) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49399 8yl9:I (2.75) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    49400 8yl9:I (2.75) BS03 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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