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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49001 8vty:15 (2.6) BS05 MG N/A N/A P80339 39039256
    49002 8vty:17 (2.6) BS02 MG N/A N/A P80340 39039256
    49003 8vty:17 (2.6) BS03 MG N/A N/A P80340 39039256
    49004 8vty:17 (2.6) BS04 MG N/A N/A P80340 39039256
    49005 8vty:17 (2.6) BS05 MG N/A N/A P80340 39039256
    49006 8vty:18 (2.6) BS02 MG N/A N/A Q5SKU1 39039256
    49007 8vty:18 (2.6) BS03 MG N/A N/A Q5SKU1 39039256
    49008 8vty:1D (2.6) BS03 MG N/A N/A P60405 39039256
    49009 8vty:1D (2.6) BS04 MG N/A N/A P60405 39039256
    49010 8vty:1D (2.6) BS05 MG N/A N/A P60405 39039256
    49011 8vty:1D (2.6) BS06 MG N/A N/A P60405 39039256
    49012 8vty:1D (2.6) BS07 MG N/A N/A P60405 39039256
    49013 8vty:1D (2.6) BS08 MG N/A N/A P60405 39039256
    49014 8vty:1D (2.6) BS09 MG N/A N/A P60405 39039256
    49015 8vty:1D (2.6) BS10 MG N/A N/A P60405 39039256
    49016 8vty:1D (2.6) BS11 MG N/A N/A P60405 39039256
    49017 8vty:1D (2.6) BS12 MG N/A N/A P60405 39039256
    49018 8vty:1D (2.6) BS13 MG N/A N/A P60405 39039256
    49019 8vty:1D (2.6) BS14 MG N/A N/A P60405 39039256
    49020 8vty:1E (2.6) BS02 MG N/A N/A Q5SHN8 39039256
    49021 8vty:1E (2.6) BS03 MG N/A N/A Q5SHN8 39039256
    49022 8vty:1E (2.6) BS04 MG N/A N/A Q5SHN8 39039256
    49023 8vty:1E (2.6) BS05 MG N/A N/A Q5SHN8 39039256
    49024 8vty:1F (2.6) BS02 MG N/A N/A Q5SHN9 39039256
    49025 8vty:1F (2.6) BS03 MG N/A N/A Q5SHN9 39039256
    49026 8vty:1F (2.6) BS04 MG N/A N/A Q5SHN9 39039256
    49027 8vty:1F (2.6) BS05 MG N/A N/A Q5SHN9 39039256
    49028 8vty:1F (2.6) BS06 MG N/A N/A Q5SHN9 39039256
    49029 8vty:1F (2.6) BS07 MG N/A N/A Q5SHN9 39039256
    49030 8vty:1F (2.6) BS08 MG N/A N/A Q5SHN9 39039256
    49031 8vty:1F (2.6) BS09 MG N/A N/A Q5SHN9 39039256
    49032 8vty:1F (2.6) BS10 MG N/A N/A Q5SHN9 39039256
    49033 8vty:1F (2.6) BS11 MG N/A N/A Q5SHN9 39039256
    49034 8vty:1F (2.6) BS12 MG N/A N/A Q5SHN9 39039256
    49035 8vty:1F (2.6) BS13 MG N/A N/A Q5SHN9 39039256
    49036 8vty:1F (2.6) BS14 MG N/A N/A Q5SHN9 39039256
    49037 8vty:1G (2.6) BS03 MG N/A N/A Q5SHQ0 39039256
    49038 8vty:1G (2.6) BS04 MG N/A N/A Q5SHQ0 39039256
    49039 8vty:1N (2.6) BS02 MG N/A N/A P60488 39039256
    49040 8vty:1N (2.6) BS03 MG N/A N/A P60488 39039256
    49041 8vty:1N (2.6) BS04 MG N/A N/A P60488 39039256
    49042 8vty:1O (2.6) BS03 MG N/A N/A Q5SHP8 39039256
    49043 8vty:1P (2.6) BS02 MG N/A N/A Q5SHQ7 39039256
    49044 8vty:1P (2.6) BS03 MG N/A N/A Q5SHQ7 39039256
    49045 8vty:1Q (2.6) BS03 MG N/A N/A P60489 39039256
    49046 8vty:1Q (2.6) BS04 MG N/A N/A P60489 39039256
    49047 8vty:1Q (2.6) BS05 MG N/A N/A P60489 39039256
    49048 8vty:1R (2.6) BS02 MG N/A N/A Q9Z9H5 39039256
    49049 8vty:1R (2.6) BS03 MG N/A N/A Q9Z9H5 39039256
    49050 8vty:1R (2.6) BS04 MG N/A N/A Q9Z9H5 39039256
    49051 8vty:1R (2.6) BS05 MG N/A N/A Q9Z9H5 39039256
    49052 8vty:1U (2.6) BS02 MG N/A N/A P60491 39039256
    49053 8vty:1U (2.6) BS03 MG N/A N/A P60491 39039256
    49054 8vty:1U (2.6) BS04 MG N/A N/A P60491 39039256
    49055 8vty:1U (2.6) BS05 MG N/A N/A P60491 39039256
    49056 8vty:1U (2.6) BS06 MG N/A N/A P60491 39039256
    49057 8vty:1U (2.6) BS07 MG N/A N/A P60491 39039256
    49058 8vty:1V (2.6) BS02 MG N/A N/A P60492 39039256
    49059 8vty:1V (2.6) BS03 MG N/A N/A P60492 39039256
    49060 8vty:1V (2.6) BS04 MG N/A N/A P60492 39039256
    49061 8vty:1W (2.6) BS02 MG N/A N/A Q5SHP3 39039256
    49062 8vty:1b (2.6) BS02 MG N/A N/A P80371 39039256
    49063 8vty:1e (2.6) BS02 MG N/A N/A Q5SHQ5 39039256
    49064 8vty:1k (2.6) BS02 MG N/A N/A P80376 39039256
    49065 8vty:1l (2.6) BS02 MG N/A N/A Q5SHN3 39039256
    49066 8vty:1m (2.6) BS02 MG N/A N/A P80377 39039256
    49067 8vty:1m (2.6) BS03 MG N/A N/A P80377 39039256
    49068 8vty:1n (2.6) BS02 MG N/A N/A P0DOY6 39039256
    49069 8vty:1t (2.6) BS02 MG N/A N/A P80380 39039256
    49070 8vty:1y (2.6) BS02 MG N/A N/A P0AD49 39039256
    49071 8vty:1y (2.6) BS03 MG N/A N/A P0AD49 39039256
    49072 8vty:23 (2.6) BS03 MG N/A N/A Q5SHQ6 39039256
    49073 8vty:27 (2.6) BS02 MG N/A N/A P80340 39039256
    49074 8vty:27 (2.6) BS03 MG N/A N/A P80340 39039256
    49075 8vty:2D (2.6) BS03 MG N/A N/A P60405 39039256
    49076 8vty:2D (2.6) BS04 MG N/A N/A P60405 39039256
    49077 8vty:2D (2.6) BS05 MG N/A N/A P60405 39039256
    49078 8vty:2D (2.6) BS06 MG N/A N/A P60405 39039256
    49079 8vty:2D (2.6) BS07 MG N/A N/A P60405 39039256
    49080 8vty:2D (2.6) BS08 MG N/A N/A P60405 39039256
    49081 8vty:2D (2.6) BS09 MG N/A N/A P60405 39039256
    49082 8vty:2D (2.6) BS10 MG N/A N/A P60405 39039256
    49083 8vty:2E (2.6) BS02 MG N/A N/A Q5SHN8 39039256
    49084 8vty:2E (2.6) BS03 MG N/A N/A Q5SHN8 39039256
    49085 8vty:2F (2.6) BS02 MG N/A N/A Q5SHN9 39039256
    49086 8vty:2F (2.6) BS03 MG N/A N/A Q5SHN9 39039256
    49087 8vty:2F (2.6) BS04 MG N/A N/A Q5SHN9 39039256
    49088 8vty:2F (2.6) BS05 MG N/A N/A Q5SHN9 39039256
    49089 8vty:2G (2.6) BS03 MG N/A N/A Q5SHQ0 39039256
    49090 8vty:2G (2.6) BS04 MG N/A N/A Q5SHQ0 39039256
    49091 8vty:2Q (2.6) BS03 MG N/A N/A P60489 39039256
    49092 8vty:2Q (2.6) BS04 MG N/A N/A P60489 39039256
    49093 8vty:2U (2.6) BS02 MG N/A N/A P60491 39039256
    49094 8vty:2V (2.6) BS02 MG N/A N/A P60492 39039256
    49095 8vty:2V (2.6) BS03 MG N/A N/A P60492 39039256
    49096 8vty:2W (2.6) BS02 MG N/A N/A Q5SHP3 39039256
    49097 8vty:2W (2.6) BS03 MG N/A N/A Q5SHP3 39039256
    49098 8vty:2f (2.6) BS02 MG N/A N/A Q5SLP8 39039256
    49099 8vty:2f (2.6) BS03 MG N/A N/A Q5SLP8 39039256
    49100 8vty:2j (2.6) BS02 MG N/A N/A Q5SHN7 39039256
    49101 8vty:2k (2.6) BS02 MG N/A N/A P80376 39039256
    49102 8vty:2l (2.6) BS02 MG N/A N/A Q5SHN3 39039256
    49103 8vty:2t (2.6) BS02 MG N/A N/A P80380 39039256
    49104 8vw2:A (1.95) BS05 MG 6.3.2.9 GO:0005515 ... P14900 N/A
    49105 8vw4:A (2.4) BS01 MG N/A N/A Q13191 38894924
    49106 8vw4:B (2.4) BS02 MG N/A N/A Q13191 38894924
    49107 8vw5:A (1.76) BS01 MG N/A N/A Q13191 38894924
    49108 8vw5:B (1.76) BS01 MG N/A N/A Q13191 38894924
    49109 8w09:A (3.2) BS05 MG ? GO:0003676 ... P12497 38582148
    49110 8w09:A (3.2) BS06 MG ? GO:0003676 ... P12497 38582148
    49111 8w09:I (3.2) BS05 MG ? GO:0003676 ... P12497 38582148
    49112 8w09:I (3.2) BS06 MG ? GO:0003676 ... P12497 38582148
    49113 8w1f:A (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49114 8w1f:B (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49115 8w1f:C (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49116 8w1f:D (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49117 8w1f:E (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49118 8w1f:F (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49119 8w1f:G (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49120 8w1f:H (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49121 8w1f:I (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49122 8w1f:J (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49123 8w1f:K (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49124 8w1f:L (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    49125 8w21:A (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    49126 8w21:B (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    49127 8w21:C (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    49128 8w21:E (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    49129 8w21:G (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    49130 8w21:H (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    49131 8w2r:A (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    49132 8w2r:A (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    49133 8w2r:I (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    49134 8w2r:I (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    49135 8w34:A (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    49136 8w34:A (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    49137 8w34:I (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    49138 8w34:I (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    49139 8w6v:A (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    49140 8w6v:B (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    49141 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    49142 8w71:A (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    49143 8w71:B (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    49144 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    49145 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    49146 8w8l:A (1.824) BS02 MG N/A N/A Q9I502 N/A
    49147 8w8l:A (1.824) BS03 MG N/A N/A Q9I502 N/A
    49148 8w8l:A (1.824) BS04 MG N/A N/A Q9I502 N/A
    49149 8w8l:A (1.824) BS05 MG N/A N/A Q9I502 N/A
    49150 8w8l:A (1.824) BS06 MG N/A N/A Q9I502 N/A
    49151 8w8l:A (1.824) BS07 MG N/A N/A Q9I502 N/A
    49152 8w8l:A (1.824) BS08 MG N/A N/A Q9I502 N/A
    49153 8w8l:B (1.824) BS02 MG N/A N/A Q9I502 N/A
    49154 8w8l:B (1.824) BS03 MG N/A N/A Q9I502 N/A
    49155 8w8n:B (2.693) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    49156 8w8n:D (2.693) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    49157 8w8n:D (2.693) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    49158 8w8n:F (2.693) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    49159 8w8o:B (2.512) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    49160 8w8o:D (2.512) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    49161 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    49162 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    49163 8w8p:B (3.165) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    49164 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    49165 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    49166 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    49167 8w9i:A (2.45) BS02 MG N/A N/A Q9I502 N/A
    49168 8w9i:B (2.45) BS02 MG N/A N/A Q9I502 N/A
    49169 8w9i:B (2.45) BS03 MG N/A N/A Q9I502 N/A
    49170 8w9m:C (3.1) BS02 MG ? GO:0005524 ... Q8YZ76 38457518
    49171 8w9m:D (3.1) BS03 MG ? GO:0005524 ... Q8YZ75 38457518
    49172 8w9z:C (3.0) BS01 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    49173 8wa0:C (2.7) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    49174 8wa1:C (2.8) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    49175 8wa5:A (2.51) BS02 MG 7.2.2.19 GO:0000166 ... P19156 38072058
    49176 8wa7:A (1.63) BS02 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    49177 8wa7:B (1.63) BS03 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    49178 8wak:o (5.47) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49179 8wal:o (8.52) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49180 8wam:A (3.23) BS02 MG ? GO:0005524 ... Q84TH5 38050355
    49181 8wam:B (3.23) BS03 MG ? GO:0005524 ... Q84TH5 38050355
    49182 8wan:o (6.07) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49183 8wao:o (6.4) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49184 8wap:o (5.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49185 8waq:o (6.29) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49186 8war:o (7.2) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49187 8was:o (6.13) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49188 8wat:o (2.82) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49189 8wau:o (2.78) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49190 8wav:o (2.72) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49191 8waw:o (3.02) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49192 8wax:o (2.75) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49193 8way:o (2.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49194 8waz:o (2.76) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49195 8wb0:o (2.94) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    49196 8wce:A (3.09) BS03 MG N/A N/A N/A 38661236
    49197 8wcn:B (3.2) BS05 MG 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    49198 8wd8:A (2.9) BS04 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    49199 8wd8:A (2.9) BS05 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    49200 8wd8:A (2.9) BS06 MG ? GO:0003676 ... A0A0Q2M2Z1 38295801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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