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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48801 8vtw:1G (2.35) BS03 MG N/A N/A Q5SHQ0 39039256
    48802 8vtw:1G (2.35) BS04 MG N/A N/A Q5SHQ0 39039256
    48803 8vtw:1G (2.35) BS05 MG N/A N/A Q5SHQ0 39039256
    48804 8vtw:1N (2.35) BS02 MG N/A N/A P60488 39039256
    48805 8vtw:1N (2.35) BS03 MG N/A N/A P60488 39039256
    48806 8vtw:1P (2.35) BS02 MG N/A N/A Q5SHQ7 39039256
    48807 8vtw:1P (2.35) BS03 MG N/A N/A Q5SHQ7 39039256
    48808 8vtw:1Q (2.35) BS03 MG N/A N/A P60489 39039256
    48809 8vtw:1Q (2.35) BS04 MG N/A N/A P60489 39039256
    48810 8vtw:1Q (2.35) BS05 MG N/A N/A P60489 39039256
    48811 8vtw:1Q (2.35) BS06 MG N/A N/A P60489 39039256
    48812 8vtw:1R (2.35) BS02 MG N/A N/A Q9Z9H5 39039256
    48813 8vtw:1R (2.35) BS03 MG N/A N/A Q9Z9H5 39039256
    48814 8vtw:1R (2.35) BS04 MG N/A N/A Q9Z9H5 39039256
    48815 8vtw:1U (2.35) BS02 MG N/A N/A P60491 39039256
    48816 8vtw:1U (2.35) BS03 MG N/A N/A P60491 39039256
    48817 8vtw:1U (2.35) BS04 MG N/A N/A P60491 39039256
    48818 8vtw:1U (2.35) BS05 MG N/A N/A P60491 39039256
    48819 8vtw:1V (2.35) BS02 MG N/A N/A P60492 39039256
    48820 8vtw:1V (2.35) BS03 MG N/A N/A P60492 39039256
    48821 8vtw:1V (2.35) BS04 MG N/A N/A P60492 39039256
    48822 8vtw:1V (2.35) BS05 MG N/A N/A P60492 39039256
    48823 8vtw:1W (2.35) BS02 MG N/A N/A Q5SHP3 39039256
    48824 8vtw:1b (2.35) BS02 MG N/A N/A P80371 39039256
    48825 8vtw:1d (2.35) BS02 MG N/A N/A P80373 39039256
    48826 8vtw:1e (2.35) BS02 MG N/A N/A Q5SHQ5 39039256
    48827 8vtw:1f (2.35) BS02 MG N/A N/A Q5SLP8 39039256
    48828 8vtw:1k (2.35) BS02 MG N/A N/A P80376 39039256
    48829 8vtw:1l (2.35) BS02 MG N/A N/A Q5SHN3 39039256
    48830 8vtw:1m (2.35) BS03 MG N/A N/A P80377 39039256
    48831 8vtw:1t (2.35) BS02 MG N/A N/A P80380 39039256
    48832 8vtw:1y (2.35) BS02 MG N/A N/A P0AD49 39039256
    48833 8vtw:20 (2.35) BS03 MG N/A N/A P60493 39039256
    48834 8vtw:23 (2.35) BS03 MG N/A N/A Q5SHQ6 39039256
    48835 8vtw:25 (2.35) BS02 MG N/A N/A P80339 39039256
    48836 8vtw:26 (2.35) BS02 MG N/A N/A P35871 39039256
    48837 8vtw:27 (2.35) BS02 MG N/A N/A P80340 39039256
    48838 8vtw:27 (2.35) BS03 MG N/A N/A P80340 39039256
    48839 8vtw:27 (2.35) BS04 MG N/A N/A P80340 39039256
    48840 8vtw:2D (2.35) BS02 MG N/A N/A P60405 39039256
    48841 8vtw:2D (2.35) BS03 MG N/A N/A P60405 39039256
    48842 8vtw:2D (2.35) BS04 MG N/A N/A P60405 39039256
    48843 8vtw:2D (2.35) BS05 MG N/A N/A P60405 39039256
    48844 8vtw:2D (2.35) BS06 MG N/A N/A P60405 39039256
    48845 8vtw:2D (2.35) BS07 MG N/A N/A P60405 39039256
    48846 8vtw:2E (2.35) BS02 MG N/A N/A Q5SHN8 39039256
    48847 8vtw:2E (2.35) BS03 MG N/A N/A Q5SHN8 39039256
    48848 8vtw:2F (2.35) BS02 MG N/A N/A Q5SHN9 39039256
    48849 8vtw:2F (2.35) BS03 MG N/A N/A Q5SHN9 39039256
    48850 8vtw:2F (2.35) BS04 MG N/A N/A Q5SHN9 39039256
    48851 8vtw:2F (2.35) BS05 MG N/A N/A Q5SHN9 39039256
    48852 8vtw:2G (2.35) BS03 MG N/A N/A Q5SHQ0 39039256
    48853 8vtw:2Q (2.35) BS03 MG N/A N/A P60489 39039256
    48854 8vtw:2Q (2.35) BS04 MG N/A N/A P60489 39039256
    48855 8vtw:2R (2.35) BS02 MG N/A N/A Q9Z9H5 39039256
    48856 8vtw:2V (2.35) BS02 MG N/A N/A P60492 39039256
    48857 8vtw:2V (2.35) BS03 MG N/A N/A P60492 39039256
    48858 8vtw:2W (2.35) BS02 MG N/A N/A Q5SHP3 39039256
    48859 8vtw:2W (2.35) BS03 MG N/A N/A Q5SHP3 39039256
    48860 8vtw:2f (2.35) BS02 MG N/A N/A Q5SLP8 39039256
    48861 8vtw:2j (2.35) BS02 MG N/A N/A Q5SHN7 39039256
    48862 8vtw:2k (2.35) BS02 MG N/A N/A P80376 39039256
    48863 8vtw:2l (2.35) BS02 MG N/A N/A Q5SHN3 39039256
    48864 8vtw:2t (2.35) BS02 MG N/A N/A P80380 39039256
    48865 8vtx:10 (2.4) BS04 MG N/A N/A P60493 39039256
    48866 8vtx:10 (2.4) BS05 MG N/A N/A P60493 39039256
    48867 8vtx:10 (2.4) BS06 MG N/A N/A P60493 39039256
    48868 8vtx:11 (2.4) BS03 MG N/A N/A P60494 39039256
    48869 8vtx:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    48870 8vtx:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    48871 8vtx:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    48872 8vtx:15 (2.4) BS02 MG N/A N/A P80339 39039256
    48873 8vtx:16 (2.4) BS02 MG N/A N/A P35871 39039256
    48874 8vtx:16 (2.4) BS03 MG N/A N/A P35871 39039256
    48875 8vtx:17 (2.4) BS02 MG N/A N/A P80340 39039256
    48876 8vtx:17 (2.4) BS03 MG N/A N/A P80340 39039256
    48877 8vtx:17 (2.4) BS04 MG N/A N/A P80340 39039256
    48878 8vtx:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    48879 8vtx:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    48880 8vtx:1D (2.4) BS03 MG N/A N/A P60405 39039256
    48881 8vtx:1D (2.4) BS04 MG N/A N/A P60405 39039256
    48882 8vtx:1D (2.4) BS05 MG N/A N/A P60405 39039256
    48883 8vtx:1D (2.4) BS06 MG N/A N/A P60405 39039256
    48884 8vtx:1D (2.4) BS07 MG N/A N/A P60405 39039256
    48885 8vtx:1D (2.4) BS08 MG N/A N/A P60405 39039256
    48886 8vtx:1D (2.4) BS09 MG N/A N/A P60405 39039256
    48887 8vtx:1D (2.4) BS10 MG N/A N/A P60405 39039256
    48888 8vtx:1D (2.4) BS11 MG N/A N/A P60405 39039256
    48889 8vtx:1D (2.4) BS12 MG N/A N/A P60405 39039256
    48890 8vtx:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    48891 8vtx:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    48892 8vtx:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    48893 8vtx:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    48894 8vtx:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    48895 8vtx:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    48896 8vtx:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    48897 8vtx:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    48898 8vtx:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    48899 8vtx:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    48900 8vtx:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    48901 8vtx:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    48902 8vtx:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    48903 8vtx:1F (2.4) BS11 MG N/A N/A Q5SHN9 39039256
    48904 8vtx:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    48905 8vtx:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    48906 8vtx:1N (2.4) BS02 MG N/A N/A P60488 39039256
    48907 8vtx:1N (2.4) BS03 MG N/A N/A P60488 39039256
    48908 8vtx:1N (2.4) BS04 MG N/A N/A P60488 39039256
    48909 8vtx:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    48910 8vtx:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    48911 8vtx:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    48912 8vtx:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    48913 8vtx:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    48914 8vtx:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    48915 8vtx:1P (2.4) BS06 MG N/A N/A Q5SHQ7 39039256
    48916 8vtx:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    48917 8vtx:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    48918 8vtx:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    48919 8vtx:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    48920 8vtx:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    48921 8vtx:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    48922 8vtx:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    48923 8vtx:1R (2.4) BS04 MG N/A N/A Q9Z9H5 39039256
    48924 8vtx:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    48925 8vtx:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    48926 8vtx:1U (2.4) BS02 MG N/A N/A P60491 39039256
    48927 8vtx:1U (2.4) BS03 MG N/A N/A P60491 39039256
    48928 8vtx:1U (2.4) BS04 MG N/A N/A P60491 39039256
    48929 8vtx:1U (2.4) BS05 MG N/A N/A P60491 39039256
    48930 8vtx:1U (2.4) BS06 MG N/A N/A P60491 39039256
    48931 8vtx:1U (2.4) BS07 MG N/A N/A P60491 39039256
    48932 8vtx:1U (2.4) BS08 MG N/A N/A P60491 39039256
    48933 8vtx:1U (2.4) BS09 MG N/A N/A P60491 39039256
    48934 8vtx:1V (2.4) BS02 MG N/A N/A P60492 39039256
    48935 8vtx:1V (2.4) BS03 MG N/A N/A P60492 39039256
    48936 8vtx:1V (2.4) BS04 MG N/A N/A P60492 39039256
    48937 8vtx:1V (2.4) BS05 MG N/A N/A P60492 39039256
    48938 8vtx:1V (2.4) BS06 MG N/A N/A P60492 39039256
    48939 8vtx:1V (2.4) BS07 MG N/A N/A P60492 39039256
    48940 8vtx:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    48941 8vtx:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    48942 8vtx:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    48943 8vtx:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    48944 8vtx:1W (2.4) BS06 MG N/A N/A Q5SHP3 39039256
    48945 8vtx:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    48946 8vtx:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    48947 8vtx:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    48948 8vtx:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    48949 8vtx:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    48950 8vtx:1Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    48951 8vtx:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    48952 8vtx:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    48953 8vtx:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    48954 8vtx:1k (2.4) BS02 MG N/A N/A P80376 39039256
    48955 8vtx:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    48956 8vtx:1m (2.4) BS04 MG N/A N/A P80377 39039256
    48957 8vtx:1t (2.4) BS02 MG N/A N/A P80380 39039256
    48958 8vtx:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    48959 8vtx:26 (2.4) BS02 MG N/A N/A P35871 39039256
    48960 8vtx:27 (2.4) BS02 MG N/A N/A P80340 39039256
    48961 8vtx:27 (2.4) BS03 MG N/A N/A P80340 39039256
    48962 8vtx:28 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    48963 8vtx:2D (2.4) BS03 MG N/A N/A P60405 39039256
    48964 8vtx:2D (2.4) BS04 MG N/A N/A P60405 39039256
    48965 8vtx:2D (2.4) BS05 MG N/A N/A P60405 39039256
    48966 8vtx:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    48967 8vtx:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    48968 8vtx:2F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    48969 8vtx:2F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    48970 8vtx:2F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    48971 8vtx:2G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    48972 8vtx:2Q (2.4) BS05 MG N/A N/A P60489 39039256
    48973 8vtx:2Q (2.4) BS06 MG N/A N/A P60489 39039256
    48974 8vtx:2T (2.4) BS03 MG N/A N/A P60490 39039256
    48975 8vtx:2U (2.4) BS02 MG N/A N/A P60491 39039256
    48976 8vtx:2V (2.4) BS02 MG N/A N/A P60492 39039256
    48977 8vtx:2W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    48978 8vtx:2W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    48979 8vtx:2X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    48980 8vtx:2Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    48981 8vtx:2d (2.4) BS02 MG N/A N/A P80373 39039256
    48982 8vtx:2e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    48983 8vtx:2f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    48984 8vtx:2k (2.4) BS02 MG N/A N/A P80376 39039256
    48985 8vtx:2l (2.4) BS02 MG N/A N/A Q5SHN3 39039256
    48986 8vtx:2l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    48987 8vtx:2l (2.4) BS04 MG N/A N/A Q5SHN3 39039256
    48988 8vtx:2q (2.4) BS02 MG N/A N/A P0DOY7 39039256
    48989 8vtx:2q (2.4) BS03 MG N/A N/A P0DOY7 39039256
    48990 8vtx:2r (2.4) BS02 MG N/A N/A Q5SLQ0 39039256
    48991 8vtx:2t (2.4) BS02 MG N/A N/A P80380 39039256
    48992 8vty:10 (2.6) BS03 MG N/A N/A P60493 39039256
    48993 8vty:10 (2.6) BS04 MG N/A N/A P60493 39039256
    48994 8vty:10 (2.6) BS05 MG N/A N/A P60493 39039256
    48995 8vty:11 (2.6) BS02 MG N/A N/A P60494 39039256
    48996 8vty:13 (2.6) BS03 MG N/A N/A Q5SHQ6 39039256
    48997 8vty:13 (2.6) BS04 MG N/A N/A Q5SHQ6 39039256
    48998 8vty:15 (2.6) BS02 MG N/A N/A P80339 39039256
    48999 8vty:15 (2.6) BS03 MG N/A N/A P80339 39039256
    49000 8vty:15 (2.6) BS04 MG N/A N/A P80339 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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