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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48601 8vtu:1Y (2.4) BS03 MG N/A N/A Q5SHP9 39039256
    48602 8vtu:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    48603 8vtu:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    48604 8vtu:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    48605 8vtu:1k (2.4) BS02 MG N/A N/A P80376 39039256
    48606 8vtu:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    48607 8vtu:1m (2.4) BS04 MG N/A N/A P80377 39039256
    48608 8vtu:1t (2.4) BS02 MG N/A N/A P80380 39039256
    48609 8vtu:21 (2.4) BS03 MG N/A N/A P60494 39039256
    48610 8vtu:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    48611 8vtu:25 (2.4) BS02 MG N/A N/A P80339 39039256
    48612 8vtu:26 (2.4) BS02 MG N/A N/A P35871 39039256
    48613 8vtu:27 (2.4) BS02 MG N/A N/A P80340 39039256
    48614 8vtu:27 (2.4) BS03 MG N/A N/A P80340 39039256
    48615 8vtu:2D (2.4) BS03 MG N/A N/A P60405 39039256
    48616 8vtu:2D (2.4) BS04 MG N/A N/A P60405 39039256
    48617 8vtu:2D (2.4) BS05 MG N/A N/A P60405 39039256
    48618 8vtu:2D (2.4) BS06 MG N/A N/A P60405 39039256
    48619 8vtu:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    48620 8vtu:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    48621 8vtu:2F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    48622 8vtu:2F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    48623 8vtu:2G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    48624 8vtu:2Q (2.4) BS05 MG N/A N/A P60489 39039256
    48625 8vtu:2Q (2.4) BS06 MG N/A N/A P60489 39039256
    48626 8vtu:2T (2.4) BS03 MG N/A N/A P60490 39039256
    48627 8vtu:2U (2.4) BS02 MG N/A N/A P60491 39039256
    48628 8vtu:2V (2.4) BS02 MG N/A N/A P60492 39039256
    48629 8vtu:2W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    48630 8vtu:2X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    48631 8vtu:2e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    48632 8vtu:2f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    48633 8vtu:2k (2.4) BS02 MG N/A N/A P80376 39039256
    48634 8vtu:2l (2.4) BS02 MG N/A N/A Q5SHN3 39039256
    48635 8vtu:2l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    48636 8vtu:2l (2.4) BS04 MG N/A N/A Q5SHN3 39039256
    48637 8vtu:2q (2.4) BS02 MG N/A N/A P0DOY7 39039256
    48638 8vtu:2q (2.4) BS03 MG N/A N/A P0DOY7 39039256
    48639 8vtv:10 (2.55) BS04 MG N/A N/A P60493 39039256
    48640 8vtv:10 (2.55) BS05 MG N/A N/A P60493 39039256
    48641 8vtv:11 (2.55) BS03 MG N/A N/A P60494 39039256
    48642 8vtv:12 (2.55) BS02 MG N/A N/A Q5SHP6 39039256
    48643 8vtv:13 (2.55) BS03 MG N/A N/A Q5SHQ6 39039256
    48644 8vtv:13 (2.55) BS04 MG N/A N/A Q5SHQ6 39039256
    48645 8vtv:13 (2.55) BS05 MG N/A N/A Q5SHQ6 39039256
    48646 8vtv:13 (2.55) BS06 MG N/A N/A Q5SHQ6 39039256
    48647 8vtv:15 (2.55) BS02 MG N/A N/A P80339 39039256
    48648 8vtv:15 (2.55) BS03 MG N/A N/A P80339 39039256
    48649 8vtv:15 (2.55) BS04 MG N/A N/A P80339 39039256
    48650 8vtv:16 (2.55) BS02 MG N/A N/A P35871 39039256
    48651 8vtv:16 (2.55) BS03 MG N/A N/A P35871 39039256
    48652 8vtv:17 (2.55) BS02 MG N/A N/A P80340 39039256
    48653 8vtv:17 (2.55) BS03 MG N/A N/A P80340 39039256
    48654 8vtv:18 (2.55) BS02 MG N/A N/A Q5SKU1 39039256
    48655 8vtv:18 (2.55) BS03 MG N/A N/A Q5SKU1 39039256
    48656 8vtv:1D (2.55) BS03 MG N/A N/A P60405 39039256
    48657 8vtv:1D (2.55) BS04 MG N/A N/A P60405 39039256
    48658 8vtv:1D (2.55) BS05 MG N/A N/A P60405 39039256
    48659 8vtv:1D (2.55) BS06 MG N/A N/A P60405 39039256
    48660 8vtv:1D (2.55) BS07 MG N/A N/A P60405 39039256
    48661 8vtv:1D (2.55) BS08 MG N/A N/A P60405 39039256
    48662 8vtv:1D (2.55) BS09 MG N/A N/A P60405 39039256
    48663 8vtv:1D (2.55) BS10 MG N/A N/A P60405 39039256
    48664 8vtv:1D (2.55) BS11 MG N/A N/A P60405 39039256
    48665 8vtv:1D (2.55) BS12 MG N/A N/A P60405 39039256
    48666 8vtv:1D (2.55) BS13 MG N/A N/A P60405 39039256
    48667 8vtv:1E (2.55) BS02 MG N/A N/A Q5SHN8 39039256
    48668 8vtv:1E (2.55) BS03 MG N/A N/A Q5SHN8 39039256
    48669 8vtv:1E (2.55) BS04 MG N/A N/A Q5SHN8 39039256
    48670 8vtv:1E (2.55) BS05 MG N/A N/A Q5SHN8 39039256
    48671 8vtv:1F (2.55) BS02 MG N/A N/A Q5SHN9 39039256
    48672 8vtv:1F (2.55) BS03 MG N/A N/A Q5SHN9 39039256
    48673 8vtv:1F (2.55) BS04 MG N/A N/A Q5SHN9 39039256
    48674 8vtv:1F (2.55) BS05 MG N/A N/A Q5SHN9 39039256
    48675 8vtv:1F (2.55) BS06 MG N/A N/A Q5SHN9 39039256
    48676 8vtv:1F (2.55) BS07 MG N/A N/A Q5SHN9 39039256
    48677 8vtv:1F (2.55) BS08 MG N/A N/A Q5SHN9 39039256
    48678 8vtv:1F (2.55) BS09 MG N/A N/A Q5SHN9 39039256
    48679 8vtv:1F (2.55) BS10 MG N/A N/A Q5SHN9 39039256
    48680 8vtv:1G (2.55) BS04 MG N/A N/A Q5SHQ0 39039256
    48681 8vtv:1G (2.55) BS05 MG N/A N/A Q5SHQ0 39039256
    48682 8vtv:1I (2.55) BS02 MG N/A N/A Q5SLQ1 39039256
    48683 8vtv:1N (2.55) BS02 MG N/A N/A P60488 39039256
    48684 8vtv:1N (2.55) BS03 MG N/A N/A P60488 39039256
    48685 8vtv:1N (2.55) BS04 MG N/A N/A P60488 39039256
    48686 8vtv:1N (2.55) BS05 MG N/A N/A P60488 39039256
    48687 8vtv:1N (2.55) BS06 MG N/A N/A P60488 39039256
    48688 8vtv:1O (2.55) BS03 MG N/A N/A Q5SHP8 39039256
    48689 8vtv:1P (2.55) BS02 MG N/A N/A Q5SHQ7 39039256
    48690 8vtv:1P (2.55) BS03 MG N/A N/A Q5SHQ7 39039256
    48691 8vtv:1P (2.55) BS04 MG N/A N/A Q5SHQ7 39039256
    48692 8vtv:1P (2.55) BS05 MG N/A N/A Q5SHQ7 39039256
    48693 8vtv:1Q (2.55) BS05 MG N/A N/A P60489 39039256
    48694 8vtv:1Q (2.55) BS06 MG N/A N/A P60489 39039256
    48695 8vtv:1Q (2.55) BS07 MG N/A N/A P60489 39039256
    48696 8vtv:1Q (2.55) BS08 MG N/A N/A P60489 39039256
    48697 8vtv:1Q (2.55) BS09 MG N/A N/A P60489 39039256
    48698 8vtv:1R (2.55) BS02 MG N/A N/A Q9Z9H5 39039256
    48699 8vtv:1S (2.55) BS03 MG N/A N/A Q5SHQ4 39039256
    48700 8vtv:1S (2.55) BS04 MG N/A N/A Q5SHQ4 39039256
    48701 8vtv:1U (2.55) BS02 MG N/A N/A P60491 39039256
    48702 8vtv:1U (2.55) BS03 MG N/A N/A P60491 39039256
    48703 8vtv:1U (2.55) BS04 MG N/A N/A P60491 39039256
    48704 8vtv:1U (2.55) BS05 MG N/A N/A P60491 39039256
    48705 8vtv:1U (2.55) BS06 MG N/A N/A P60491 39039256
    48706 8vtv:1U (2.55) BS07 MG N/A N/A P60491 39039256
    48707 8vtv:1V (2.55) BS02 MG N/A N/A P60492 39039256
    48708 8vtv:1V (2.55) BS03 MG N/A N/A P60492 39039256
    48709 8vtv:1V (2.55) BS04 MG N/A N/A P60492 39039256
    48710 8vtv:1V (2.55) BS05 MG N/A N/A P60492 39039256
    48711 8vtv:1V (2.55) BS06 MG N/A N/A P60492 39039256
    48712 8vtv:1W (2.55) BS02 MG N/A N/A Q5SHP3 39039256
    48713 8vtv:1W (2.55) BS03 MG N/A N/A Q5SHP3 39039256
    48714 8vtv:1W (2.55) BS04 MG N/A N/A Q5SHP3 39039256
    48715 8vtv:1W (2.55) BS05 MG N/A N/A Q5SHP3 39039256
    48716 8vtv:1W (2.55) BS06 MG N/A N/A Q5SHP3 39039256
    48717 8vtv:1W (2.55) BS07 MG N/A N/A Q5SHP3 39039256
    48718 8vtv:1X (2.55) BS02 MG N/A N/A Q5SHP0 39039256
    48719 8vtv:1X (2.55) BS03 MG N/A N/A Q5SHP0 39039256
    48720 8vtv:1X (2.55) BS04 MG N/A N/A Q5SHP0 39039256
    48721 8vtv:1X (2.55) BS05 MG N/A N/A Q5SHP0 39039256
    48722 8vtv:1X (2.55) BS06 MG N/A N/A Q5SHP0 39039256
    48723 8vtv:1Y (2.55) BS02 MG N/A N/A Q5SHP9 39039256
    48724 8vtv:1e (2.55) BS02 MG N/A N/A Q5SHQ5 39039256
    48725 8vtv:1e (2.55) BS03 MG N/A N/A Q5SHQ5 39039256
    48726 8vtv:1k (2.55) BS02 MG N/A N/A P80376 39039256
    48727 8vtv:1l (2.55) BS03 MG N/A N/A Q5SHN3 39039256
    48728 8vtv:1m (2.55) BS03 MG N/A N/A P80377 39039256
    48729 8vtv:1t (2.55) BS02 MG N/A N/A P80380 39039256
    48730 8vtv:21 (2.55) BS03 MG N/A N/A P60494 39039256
    48731 8vtv:23 (2.55) BS02 MG N/A N/A Q5SHQ6 39039256
    48732 8vtv:25 (2.55) BS02 MG N/A N/A P80339 39039256
    48733 8vtv:26 (2.55) BS02 MG N/A N/A P35871 39039256
    48734 8vtv:27 (2.55) BS02 MG N/A N/A P80340 39039256
    48735 8vtv:28 (2.55) BS02 MG N/A N/A Q5SKU1 39039256
    48736 8vtv:29 (2.55) BS02 MG N/A N/A Q5SHR2 39039256
    48737 8vtv:2D (2.55) BS03 MG N/A N/A P60405 39039256
    48738 8vtv:2D (2.55) BS04 MG N/A N/A P60405 39039256
    48739 8vtv:2D (2.55) BS05 MG N/A N/A P60405 39039256
    48740 8vtv:2E (2.55) BS02 MG N/A N/A Q5SHN8 39039256
    48741 8vtv:2F (2.55) BS02 MG N/A N/A Q5SHN9 39039256
    48742 8vtv:2F (2.55) BS03 MG N/A N/A Q5SHN9 39039256
    48743 8vtv:2F (2.55) BS04 MG N/A N/A Q5SHN9 39039256
    48744 8vtv:2F (2.55) BS05 MG N/A N/A Q5SHN9 39039256
    48745 8vtv:2G (2.55) BS04 MG N/A N/A Q5SHQ0 39039256
    48746 8vtv:2Q (2.55) BS05 MG N/A N/A P60489 39039256
    48747 8vtv:2T (2.55) BS03 MG N/A N/A P60490 39039256
    48748 8vtv:2U (2.55) BS02 MG N/A N/A P60491 39039256
    48749 8vtv:2V (2.55) BS02 MG N/A N/A P60492 39039256
    48750 8vtv:2W (2.55) BS02 MG N/A N/A Q5SHP3 39039256
    48751 8vtv:2W (2.55) BS03 MG N/A N/A Q5SHP3 39039256
    48752 8vtv:2X (2.55) BS02 MG N/A N/A Q5SHP0 39039256
    48753 8vtv:2Z (2.55) BS03 MG N/A N/A Q5SHZ1 39039256
    48754 8vtv:2d (2.55) BS02 MG N/A N/A P80373 39039256
    48755 8vtv:2e (2.55) BS02 MG N/A N/A Q5SHQ5 39039256
    48756 8vtv:2f (2.55) BS02 MG N/A N/A Q5SLP8 39039256
    48757 8vtv:2k (2.55) BS02 MG N/A N/A P80376 39039256
    48758 8vtv:2l (2.55) BS02 MG N/A N/A Q5SHN3 39039256
    48759 8vtv:2l (2.55) BS03 MG N/A N/A Q5SHN3 39039256
    48760 8vtv:2q (2.55) BS02 MG N/A N/A P0DOY7 39039256
    48761 8vtv:2q (2.55) BS03 MG N/A N/A P0DOY7 39039256
    48762 8vtw:10 (2.35) BS03 MG N/A N/A P60493 39039256
    48763 8vtw:10 (2.35) BS04 MG N/A N/A P60493 39039256
    48764 8vtw:10 (2.35) BS05 MG N/A N/A P60493 39039256
    48765 8vtw:11 (2.35) BS02 MG N/A N/A P60494 39039256
    48766 8vtw:13 (2.35) BS03 MG N/A N/A Q5SHQ6 39039256
    48767 8vtw:13 (2.35) BS04 MG N/A N/A Q5SHQ6 39039256
    48768 8vtw:15 (2.35) BS02 MG N/A N/A P80339 39039256
    48769 8vtw:15 (2.35) BS03 MG N/A N/A P80339 39039256
    48770 8vtw:17 (2.35) BS02 MG N/A N/A P80340 39039256
    48771 8vtw:17 (2.35) BS03 MG N/A N/A P80340 39039256
    48772 8vtw:18 (2.35) BS02 MG N/A N/A Q5SKU1 39039256
    48773 8vtw:18 (2.35) BS03 MG N/A N/A Q5SKU1 39039256
    48774 8vtw:1D (2.35) BS03 MG N/A N/A P60405 39039256
    48775 8vtw:1D (2.35) BS04 MG N/A N/A P60405 39039256
    48776 8vtw:1D (2.35) BS05 MG N/A N/A P60405 39039256
    48777 8vtw:1D (2.35) BS06 MG N/A N/A P60405 39039256
    48778 8vtw:1D (2.35) BS07 MG N/A N/A P60405 39039256
    48779 8vtw:1D (2.35) BS08 MG N/A N/A P60405 39039256
    48780 8vtw:1D (2.35) BS09 MG N/A N/A P60405 39039256
    48781 8vtw:1D (2.35) BS10 MG N/A N/A P60405 39039256
    48782 8vtw:1D (2.35) BS11 MG N/A N/A P60405 39039256
    48783 8vtw:1D (2.35) BS12 MG N/A N/A P60405 39039256
    48784 8vtw:1E (2.35) BS02 MG N/A N/A Q5SHN8 39039256
    48785 8vtw:1E (2.35) BS03 MG N/A N/A Q5SHN8 39039256
    48786 8vtw:1E (2.35) BS04 MG N/A N/A Q5SHN8 39039256
    48787 8vtw:1E (2.35) BS05 MG N/A N/A Q5SHN8 39039256
    48788 8vtw:1F (2.35) BS02 MG N/A N/A Q5SHN9 39039256
    48789 8vtw:1F (2.35) BS03 MG N/A N/A Q5SHN9 39039256
    48790 8vtw:1F (2.35) BS04 MG N/A N/A Q5SHN9 39039256
    48791 8vtw:1F (2.35) BS05 MG N/A N/A Q5SHN9 39039256
    48792 8vtw:1F (2.35) BS07 MG N/A N/A Q5SHN9 39039256
    48793 8vtw:1F (2.35) BS08 MG N/A N/A Q5SHN9 39039256
    48794 8vtw:1F (2.35) BS09 MG N/A N/A Q5SHN9 39039256
    48795 8vtw:1F (2.35) BS10 MG N/A N/A Q5SHN9 39039256
    48796 8vtw:1F (2.35) BS11 MG N/A N/A Q5SHN9 39039256
    48797 8vtw:1F (2.35) BS12 MG N/A N/A Q5SHN9 39039256
    48798 8vtw:1F (2.35) BS13 MG N/A N/A Q5SHN9 39039256
    48799 8vtw:1F (2.35) BS14 MG N/A N/A Q5SHN9 39039256
    48800 8vtw:1F (2.35) BS15 MG N/A N/A Q5SHN9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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