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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48401 8uvs:1t (2.75) BS02 MG N/A N/A P80380 38165935
    48402 8uvs:21 (2.75) BS03 MG N/A N/A P60494 38165935
    48403 8uvs:23 (2.75) BS03 MG N/A N/A Q5SHQ6 38165935
    48404 8uvs:25 (2.75) BS02 MG N/A N/A P80339 38165935
    48405 8uvs:25 (2.75) BS03 MG N/A N/A P80339 38165935
    48406 8uvs:25 (2.75) BS04 MG N/A N/A P80339 38165935
    48407 8uvs:26 (2.75) BS02 MG N/A N/A P35871 38165935
    48408 8uvs:27 (2.75) BS02 MG N/A N/A P80340 38165935
    48409 8uvs:2D (2.75) BS03 MG N/A N/A P60405 38165935
    48410 8uvs:2D (2.75) BS04 MG N/A N/A P60405 38165935
    48411 8uvs:2D (2.75) BS05 MG N/A N/A P60405 38165935
    48412 8uvs:2D (2.75) BS06 MG N/A N/A P60405 38165935
    48413 8uvs:2D (2.75) BS07 MG N/A N/A P60405 38165935
    48414 8uvs:2E (2.75) BS02 MG N/A N/A Q5SHN8 38165935
    48415 8uvs:2F (2.75) BS02 MG N/A N/A Q5SHN9 38165935
    48416 8uvs:2F (2.75) BS03 MG N/A N/A Q5SHN9 38165935
    48417 8uvs:2F (2.75) BS04 MG N/A N/A Q5SHN9 38165935
    48418 8uvs:2Q (2.75) BS04 MG N/A N/A P60489 38165935
    48419 8uvs:2Q (2.75) BS05 MG N/A N/A P60489 38165935
    48420 8uvs:2Q (2.75) BS06 MG N/A N/A P60489 38165935
    48421 8uvs:2U (2.75) BS02 MG N/A N/A P60491 38165935
    48422 8uvs:2V (2.75) BS02 MG N/A N/A P60492 38165935
    48423 8uvs:2W (2.75) BS02 MG N/A N/A Q5SHP3 38165935
    48424 8uvs:2X (2.75) BS02 MG N/A N/A Q5SHP0 38165935
    48425 8uvs:2Z (2.75) BS02 MG N/A N/A Q5SHZ1 38165935
    48426 8uvs:2d (2.75) BS02 MG N/A N/A P80373 38165935
    48427 8uvs:2e (2.75) BS03 MG N/A N/A Q5SHQ5 38165935
    48428 8uvs:2f (2.75) BS02 MG N/A N/A Q5SLP8 38165935
    48429 8uvs:2k (2.75) BS02 MG N/A N/A P80376 38165935
    48430 8uvs:2l (2.75) BS03 MG N/A N/A Q5SHN3 38165935
    48431 8uvs:2l (2.75) BS04 MG N/A N/A Q5SHN3 38165935
    48432 8uvs:2q (2.75) BS02 MG N/A N/A P0DOY7 38165935
    48433 8uwv:A (1.08) BS01 MG ? GO:0046872 ... Q8A0N7 N/A
    48434 8uyh:B (2.84) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    48435 8uyi:A (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    48436 8uyi:B (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    48437 8uz1:J (3.6) BS02 MG 3.6.4.- GO:0001725 ... P68139 38448439
    48438 8v1q:A (2.7) BS03 MG N/A N/A H9E937 39197451
    48439 8v1r:A (2.9) BS03 MG N/A N/A H9E937 39197451
    48440 8v1r:A (2.9) BS04 MG N/A N/A H9E937 39197451
    48441 8v1r:A (2.9) BS05 MG N/A N/A H9E937 39197451
    48442 8v1r:A (2.9) BS06 MG N/A N/A H9E937 39197451
    48443 8v1s:A (3.26) BS03 MG N/A N/A H9E937 39197451
    48444 8v1t:A (2.8) BS03 MG N/A N/A H9E937 39197451
    48445 8v1t:A (2.8) BS04 MG N/A N/A H9E937 39197451
    48446 8v1t:A (2.8) BS05 MG N/A N/A H9E937 39197451
    48447 8v1t:A (2.8) BS06 MG N/A N/A H9E937 39197451
    48448 8v31:A (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    48449 8v31:C (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    48450 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 38420671
    48451 8v5r:A (3.0) BS03 MG N/A GO:0000262 ... P54098 38932681
    48452 8v6g:A (11.16) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    48453 8v6h:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    48454 8v6i:A (14.06) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    48455 8v6j:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    48456 8v7e:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48457 8v7e:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48458 8v7g:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48459 8v7g:A (1.52) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48460 8v7i:A (1.72) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48461 8v7i:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48462 8v7j:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48463 8v7j:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    48464 8v7z:A (3.4) BS01 MG N/A GO:0005254 ... P13569 39107303
    48465 8v7z:A (3.4) BS02 MG N/A GO:0005254 ... P13569 39107303
    48466 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    48467 8v9g:A (1.62) BS02 MG 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    48468 8v9i:A (1.981) BS02 MG 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    48469 8v9i:B (1.981) BS02 MG 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    48470 8va2:a (4.5) BS02 MG 3.6.5.- GO:0000226 ... P68363 N/A
    48471 8val:C (3.7) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48472 8vam:B (3.9) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48473 8vap:D (3.0) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48474 8vaq:B (3.8) BS03 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48475 8vaq:D (3.8) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48476 8var:D (3.9) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48477 8vat:D (3.2) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    48478 8vcj:D (3.32) BS02 MG N/A GO:0003677 ... P05846 38834067
    48479 8vct:E (3.83) BS02 MG N/A GO:0003677 ... P05846 38834067
    48480 8vfh:A (2.01) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    48481 8vfh:A (2.01) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    48482 8vfi:A (1.77) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    48483 8vfi:A (1.77) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    48484 8vl7:A (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48485 8vl7:A (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48486 8vl7:B (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48487 8vl7:B (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48488 8vl7:C (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48489 8vl7:C (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48490 8vl7:D (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48491 8vl7:D (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48492 8vl7:E (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48493 8vl7:E (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48494 8vl7:F (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48495 8vl7:F (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48496 8vl7:G (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48497 8vl7:G (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48498 8vl7:H (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48499 8vl7:H (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    48500 8vm2:A (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    48501 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    48502 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    48503 8vme:A (2.3) BS04 MG N/A N/A Q9WV60 39226374
    48504 8vmf:A (2.5) BS03 MG N/A N/A Q9WV60 39226374
    48505 8vmg:A (2.45) BS02 MG N/A N/A Q9WV60 39226374
    48506 8voi:A (-1.00) BS01 MG ? N/A P11215 N/A
    48507 8vrx:B (2.04) BS01 MG N/A N/A N/A N/A
    48508 8vs6:B (2.73) BS03 MG N/A N/A P26012 N/A
    48509 8vsd:B (3.2) BS02 MG N/A N/A P26012 N/A
    48510 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    48511 8vsi:B (3.1) BS02 MG 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    48512 8vt0:A (3.58) BS01 MG N/A N/A A0A024L722 39108302
    48513 8vt0:B (3.58) BS01 MG N/A N/A A0A024L722 39108302
    48514 8vt0:C (3.58) BS01 MG N/A N/A A0A024L722 39108302
    48515 8vt0:D (3.58) BS01 MG N/A N/A A0A024L722 39108302
    48516 8vtu:10 (2.4) BS04 MG N/A N/A P60493 39039256
    48517 8vtu:10 (2.4) BS05 MG N/A N/A P60493 39039256
    48518 8vtu:10 (2.4) BS06 MG N/A N/A P60493 39039256
    48519 8vtu:11 (2.4) BS03 MG N/A N/A P60494 39039256
    48520 8vtu:11 (2.4) BS04 MG N/A N/A P60494 39039256
    48521 8vtu:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    48522 8vtu:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    48523 8vtu:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    48524 8vtu:13 (2.4) BS05 MG N/A N/A Q5SHQ6 39039256
    48525 8vtu:15 (2.4) BS02 MG N/A N/A P80339 39039256
    48526 8vtu:16 (2.4) BS02 MG N/A N/A P35871 39039256
    48527 8vtu:17 (2.4) BS02 MG N/A N/A P80340 39039256
    48528 8vtu:17 (2.4) BS03 MG N/A N/A P80340 39039256
    48529 8vtu:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    48530 8vtu:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    48531 8vtu:18 (2.4) BS04 MG N/A N/A Q5SKU1 39039256
    48532 8vtu:18 (2.4) BS05 MG N/A N/A Q5SKU1 39039256
    48533 8vtu:1D (2.4) BS03 MG N/A N/A P60405 39039256
    48534 8vtu:1D (2.4) BS04 MG N/A N/A P60405 39039256
    48535 8vtu:1D (2.4) BS05 MG N/A N/A P60405 39039256
    48536 8vtu:1D (2.4) BS06 MG N/A N/A P60405 39039256
    48537 8vtu:1D (2.4) BS07 MG N/A N/A P60405 39039256
    48538 8vtu:1D (2.4) BS08 MG N/A N/A P60405 39039256
    48539 8vtu:1D (2.4) BS09 MG N/A N/A P60405 39039256
    48540 8vtu:1D (2.4) BS10 MG N/A N/A P60405 39039256
    48541 8vtu:1D (2.4) BS11 MG N/A N/A P60405 39039256
    48542 8vtu:1D (2.4) BS12 MG N/A N/A P60405 39039256
    48543 8vtu:1D (2.4) BS13 MG N/A N/A P60405 39039256
    48544 8vtu:1D (2.4) BS14 MG N/A N/A P60405 39039256
    48545 8vtu:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    48546 8vtu:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    48547 8vtu:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    48548 8vtu:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    48549 8vtu:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    48550 8vtu:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    48551 8vtu:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    48552 8vtu:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    48553 8vtu:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    48554 8vtu:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    48555 8vtu:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    48556 8vtu:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    48557 8vtu:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    48558 8vtu:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    48559 8vtu:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    48560 8vtu:1N (2.4) BS02 MG N/A N/A P60488 39039256
    48561 8vtu:1N (2.4) BS03 MG N/A N/A P60488 39039256
    48562 8vtu:1N (2.4) BS04 MG N/A N/A P60488 39039256
    48563 8vtu:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    48564 8vtu:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    48565 8vtu:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    48566 8vtu:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    48567 8vtu:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    48568 8vtu:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    48569 8vtu:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    48570 8vtu:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    48571 8vtu:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    48572 8vtu:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    48573 8vtu:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    48574 8vtu:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    48575 8vtu:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    48576 8vtu:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    48577 8vtu:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    48578 8vtu:1U (2.4) BS02 MG N/A N/A P60491 39039256
    48579 8vtu:1U (2.4) BS03 MG N/A N/A P60491 39039256
    48580 8vtu:1U (2.4) BS04 MG N/A N/A P60491 39039256
    48581 8vtu:1U (2.4) BS05 MG N/A N/A P60491 39039256
    48582 8vtu:1U (2.4) BS06 MG N/A N/A P60491 39039256
    48583 8vtu:1U (2.4) BS07 MG N/A N/A P60491 39039256
    48584 8vtu:1U (2.4) BS08 MG N/A N/A P60491 39039256
    48585 8vtu:1V (2.4) BS02 MG N/A N/A P60492 39039256
    48586 8vtu:1V (2.4) BS03 MG N/A N/A P60492 39039256
    48587 8vtu:1V (2.4) BS04 MG N/A N/A P60492 39039256
    48588 8vtu:1V (2.4) BS05 MG N/A N/A P60492 39039256
    48589 8vtu:1V (2.4) BS06 MG N/A N/A P60492 39039256
    48590 8vtu:1V (2.4) BS07 MG N/A N/A P60492 39039256
    48591 8vtu:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    48592 8vtu:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    48593 8vtu:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    48594 8vtu:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    48595 8vtu:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    48596 8vtu:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    48597 8vtu:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    48598 8vtu:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    48599 8vtu:1X (2.4) BS06 MG N/A N/A Q5SHP0 39039256
    48600 8vtu:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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