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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48001 8ud8:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    48002 8ud8:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    48003 8ud8:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    48004 8ud8:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    48005 8ud8:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    48006 8ud8:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    48007 8ud8:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    48008 8ud8:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    48009 8ud8:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    48010 8ud8:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    48011 8ud8:1k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    48012 8ud8:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    48013 8ud8:1m (2.6) BS04 MG ? GO:0000049 ... P80377 38359125
    48014 8ud8:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    48015 8ud8:25 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    48016 8ud8:26 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    48017 8ud8:27 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    48018 8ud8:2D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    48019 8ud8:2D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    48020 8ud8:2D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    48021 8ud8:2D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    48022 8ud8:2D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    48023 8ud8:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    48024 8ud8:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    48025 8ud8:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    48026 8ud8:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    48027 8ud8:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    48028 8ud8:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    48029 8ud8:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    48030 8ud8:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    48031 8ud8:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    48032 8ud8:2T (2.6) BS03 MG ? GO:0003735 ... P60490 38359125
    48033 8ud8:2U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    48034 8ud8:2V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    48035 8ud8:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    48036 8ud8:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    48037 8ud8:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 38359125
    48038 8ud8:2d (2.6) BS02 MG ? GO:0003723 ... P80373 38359125
    48039 8ud8:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    48040 8ud8:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    48041 8ud8:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 38359125
    48042 8ud8:2k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    48043 8ud8:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    48044 8ud8:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    48045 8ud8:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    48046 8ud8:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    48047 8ud8:2t (2.6) BS02 MG ? GO:0003723 ... P80380 38359125
    48048 8uel:A (2.49) BS02 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    48049 8uel:A (2.49) BS03 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    48050 8uel:B (2.49) BS02 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    48051 8uex:1O (3.9) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    48052 8ufj:A (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    48053 8ufj:A (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    48054 8ufj:B (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    48055 8ufj:B (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    48056 8ufj:C (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    48057 8ufj:C (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    48058 8ugh:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    48059 8ugi:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    48060 8ugj:4A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    48061 8ugj:8A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    48062 8ugl:4A (3.0) BS04 MG N/A GO:0004129 ... O79876 38811722
    48063 8ugn:4A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    48064 8ugn:5O (2.7) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    48065 8ugn:8A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    48066 8ugr:4A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    48067 8ugr:5O (6.5) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    48068 8ugr:8A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    48069 8uh7:B (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48070 8uh7:C (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48071 8uh7:D (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48072 8uha:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    48073 8uhd:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    48074 8uhg:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    48075 8uhi:A (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48076 8uhi:B (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48077 8uhi:C (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48078 8uhi:D (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48079 8uhi:E (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48080 8uhi:F (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48081 8uhi:G (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48082 8uhi:H (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    48083 8ui0:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    48084 8ui7:A (4.2) BS01 MG ? N/A Q96QE3 38871854
    48085 8ui8:A (3.1) BS01 MG ? N/A Q96QE3 38871854
    48086 8ui9:A (3.5) BS01 MG ? N/A Q96QE3 38871854
    48087 8uii:A (3.04) BS01 MG ? GO:0003677 ... Q96QE3 38871854
    48088 8uis:A (3.23) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    48089 8ujm:A (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    48090 8ujm:B (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    48091 8ujt:A (2.31) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48092 8ujt:A (2.31) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48093 8ujv:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48094 8ujv:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48095 8ujx:A (2.17) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48096 8ujx:A (2.17) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48097 8uk4:A (3.02) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    48098 8uk9:B (3.1) BS04 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48099 8uk9:C (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48100 8uk9:D (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48101 8uk9:K (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48102 8uk9:L (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48103 8uk9:M (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48104 8ukq:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    48105 8ukr:A (3.78) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    48106 8uks:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    48107 8ukt:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    48108 8uku:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    48109 8umt:C (3.33) BS01 MG ? GO:0003677 ... P40937 38669181
    48110 8umw:D (2.93) BS03 MG ? GO:0003677 ... P35249 38669181
    48111 8umy:B (2.83) BS03 MG ? GO:0003677 ... P35250 38669181
    48112 8umy:D (2.83) BS03 MG ? GO:0003677 ... P35249 38669181
    48113 8un0:D (3.0) BS03 MG ? GO:0003677 ... P35249 38669181
    48114 8un3:B (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    48115 8un3:B (2.07) BS04 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    48116 8un3:D (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    48117 8un9:A (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    48118 8un9:B (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    48119 8unf:B (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48120 8unf:C (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48121 8unf:D (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48122 8unh:B (3.21) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    48123 8unj:B (3.35) BS01 MG ? GO:0003677 ... P35250 38669181
    48124 8uo3:A (3.5) BS02 MG ? GO:0002862 ... P63092 38480881
    48125 8upn:A (2.59) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48126 8upn:A (2.59) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48127 8upo:AE (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48128 8upp:A (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48129 8upp:B (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48130 8upp:C (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48131 8upp:D (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48132 8upp:E (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48133 8upp:F (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48134 8upp:G (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48135 8upp:H (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48136 8upp:I (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48137 8upp:J (1.78) BS03 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48138 8upp:K (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48139 8upp:L (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48140 8upq:A (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48141 8upq:B (2.45) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48142 8upq:C (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48143 8upq:D (2.45) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48144 8upq:E (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48145 8upq:F (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48146 8upr:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48147 8uql:AE (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48148 8uqm:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48149 8uqn:A (3.4) BS03 MG ? GO:0001508 ... P50148 37991948
    48150 8uqo:A (3.37) BS03 MG ? GO:0001508 ... P50148 37991948
    48151 8uqp:AE (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48152 8ur0:AE (3.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48153 8urh:AE (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48154 8uri:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48155 8urq:A (3.3) BS02 MG N/A GO:0000228 ... P23179 N/A
    48156 8uru:A (3.7) BS02 MG N/A GO:0000228 ... P23179 N/A
    48157 8urw:D (2.79) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    48158 8urx:AE (6.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48159 8ury:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    48160 8utn:K (3.1) BS01 MG ? N/A Q12756 38956021
    48161 8utp:K (3.2) BS01 MG ? N/A Q12756 38956021
    48162 8utq:K (3.1) BS01 MG ? N/A Q12756 38956021
    48163 8utr:A (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    48164 8utt:K (3.1) BS01 MG ? N/A Q12756 38956021
    48165 8utu:K (3.0) BS01 MG ? N/A Q12756 38956021
    48166 8utv:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    48167 8utv:E (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    48168 8utw:A (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    48169 8uty:K (3.3) BS01 MG ? N/A Q12756 38956021
    48170 8uu5:C (3.0) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    48171 8uu5:m (3.0) BS02 MG ? GO:0000049 ... A0A0U5ARJ0 38407413
    48172 8uu5:t (3.0) BS02 MG ? GO:0003723 ... A0A660JML5 38407413
    48173 8uu6:q (3.3) BS02 MG ? GO:0003735 ... A0A0U5ADR4 38407413
    48174 8uu7:j (3.2) BS02 MG ? GO:0000049 ... A0A0U5A730 38407413
    48175 8uu8:C (3.1) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    48176 8uu8:b (3.1) BS02 MG N/A GO:0003735 ... N/A 38407413
    48177 8uu8:v (3.1) BS02 MG ? GO:0003924 ... Q8Y8Y0 38407413
    48178 8uu9:C (3.1) BS03 MG ? GO:0002181 ... A0A0U5A742 38407413
    48179 8uu9:v (3.1) BS02 MG ? GO:0003924 ... Q8Y8Y0 38407413
    48180 8uua:6 (2.7) BS02 MG ? GO:0003735 ... A0A660JKZ6 38407413
    48181 8uua:C (2.7) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    48182 8uua:D (2.7) BS02 MG ? GO:0003735 ... A0A0U5ADD0 38407413
    48183 8uua:E (2.7) BS02 MG ? GO:0003735 ... A0A0U4VSH7 38407413
    48184 8uua:M (2.7) BS02 MG ? GO:0003735 ... A0A0U5AP82 38407413
    48185 8uua:V (2.7) BS02 MG ? GO:0000027 ... A0A0U4MTC5 38407413
    48186 8uua:Z (2.7) BS02 MG ? GO:0003735 ... A0A660JJV9 38407413
    48187 8uv3:A (2.72) BS01 MG ? GO:0019049 ... Q2V8W4 38236007
    48188 8uv3:C (2.72) BS01 MG ? GO:0019049 ... Q2V8W4 38236007
    48189 8uvr:10 (2.6) BS03 MG N/A N/A P60493 38165935
    48190 8uvr:10 (2.6) BS04 MG N/A N/A P60493 38165935
    48191 8uvr:11 (2.6) BS02 MG N/A N/A P60494 38165935
    48192 8uvr:12 (2.6) BS02 MG N/A N/A Q5SHP6 38165935
    48193 8uvr:13 (2.6) BS03 MG N/A N/A Q5SHQ6 38165935
    48194 8uvr:13 (2.6) BS04 MG N/A N/A Q5SHQ6 38165935
    48195 8uvr:15 (2.6) BS02 MG N/A N/A P80339 38165935
    48196 8uvr:15 (2.6) BS03 MG N/A N/A P80339 38165935
    48197 8uvr:15 (2.6) BS04 MG N/A N/A P80339 38165935
    48198 8uvr:15 (2.6) BS05 MG N/A N/A P80339 38165935
    48199 8uvr:16 (2.6) BS02 MG N/A N/A P35871 38165935
    48200 8uvr:17 (2.6) BS02 MG N/A N/A P80340 38165935
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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