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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47801 8ud6:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    47802 8ud6:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    47803 8ud6:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    47804 8ud6:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    47805 8ud6:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    47806 8ud6:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    47807 8ud7:10 (2.55) BS03 MG ? GO:0003735 ... P60493 38359125
    47808 8ud7:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38359125
    47809 8ud7:11 (2.55) BS02 MG ? GO:0003735 ... P60494 38359125
    47810 8ud7:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    47811 8ud7:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    47812 8ud7:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    47813 8ud7:15 (2.55) BS03 MG ? GO:0003735 ... P80339 38359125
    47814 8ud7:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38359125
    47815 8ud7:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    47816 8ud7:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    47817 8ud7:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    47818 8ud7:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    47819 8ud7:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    47820 8ud7:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    47821 8ud7:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    47822 8ud7:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    47823 8ud7:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    47824 8ud7:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    47825 8ud7:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38359125
    47826 8ud7:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38359125
    47827 8ud7:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38359125
    47828 8ud7:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38359125
    47829 8ud7:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38359125
    47830 8ud7:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    47831 8ud7:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    47832 8ud7:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    47833 8ud7:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    47834 8ud7:1E (2.55) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    47835 8ud7:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    47836 8ud7:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    47837 8ud7:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    47838 8ud7:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    47839 8ud7:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    47840 8ud7:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    47841 8ud7:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    47842 8ud7:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    47843 8ud7:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38359125
    47844 8ud7:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38359125
    47845 8ud7:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38359125
    47846 8ud7:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    47847 8ud7:1I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    47848 8ud7:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38359125
    47849 8ud7:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38359125
    47850 8ud7:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    47851 8ud7:1O (2.55) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    47852 8ud7:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    47853 8ud7:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    47854 8ud7:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    47855 8ud7:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    47856 8ud7:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    47857 8ud7:1Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    47858 8ud7:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    47859 8ud7:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    47860 8ud7:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38359125
    47861 8ud7:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38359125
    47862 8ud7:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    47863 8ud7:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    47864 8ud7:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    47865 8ud7:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    47866 8ud7:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    47867 8ud7:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38359125
    47868 8ud7:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38359125
    47869 8ud7:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38359125
    47870 8ud7:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38359125
    47871 8ud7:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38359125
    47872 8ud7:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38359125
    47873 8ud7:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38359125
    47874 8ud7:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38359125
    47875 8ud7:1U (2.55) BS11 MG ? GO:0000027 ... P60491 38359125
    47876 8ud7:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    47877 8ud7:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38359125
    47878 8ud7:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38359125
    47879 8ud7:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38359125
    47880 8ud7:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38359125
    47881 8ud7:1V (2.55) BS07 MG ? GO:0003723 ... P60492 38359125
    47882 8ud7:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    47883 8ud7:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    47884 8ud7:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    47885 8ud7:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    47886 8ud7:1W (2.55) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    47887 8ud7:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    47888 8ud7:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    47889 8ud7:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    47890 8ud7:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    47891 8ud7:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    47892 8ud7:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    47893 8ud7:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    47894 8ud7:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    47895 8ud7:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    47896 8ud7:1m (2.55) BS04 MG ? GO:0000049 ... P80377 38359125
    47897 8ud7:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    47898 8ud7:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    47899 8ud7:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    47900 8ud7:27 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    47901 8ud7:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    47902 8ud7:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    47903 8ud7:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    47904 8ud7:2D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    47905 8ud7:2D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    47906 8ud7:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    47907 8ud7:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    47908 8ud7:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    47909 8ud7:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    47910 8ud7:2Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    47911 8ud7:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    47912 8ud7:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    47913 8ud7:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    47914 8ud7:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    47915 8ud7:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    47916 8ud7:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    47917 8ud7:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    47918 8ud7:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    47919 8ud7:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    47920 8ud7:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    47921 8ud7:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    47922 8ud7:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    47923 8ud7:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    47924 8ud7:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    47925 8ud7:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    47926 8ud8:10 (2.6) BS04 MG ? GO:0003735 ... P60493 38359125
    47927 8ud8:10 (2.6) BS05 MG ? GO:0003735 ... P60493 38359125
    47928 8ud8:11 (2.6) BS03 MG ? GO:0003735 ... P60494 38359125
    47929 8ud8:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    47930 8ud8:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    47931 8ud8:15 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    47932 8ud8:15 (2.6) BS03 MG ? GO:0003735 ... P80339 38359125
    47933 8ud8:15 (2.6) BS04 MG ? GO:0003735 ... P80339 38359125
    47934 8ud8:16 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    47935 8ud8:17 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    47936 8ud8:17 (2.6) BS03 MG ? GO:0003735 ... P80340 38359125
    47937 8ud8:17 (2.6) BS04 MG ? GO:0003735 ... P80340 38359125
    47938 8ud8:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    47939 8ud8:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    47940 8ud8:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    47941 8ud8:1D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    47942 8ud8:1D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    47943 8ud8:1D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    47944 8ud8:1D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    47945 8ud8:1D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    47946 8ud8:1D (2.6) BS08 MG ? GO:0002181 ... P60405 38359125
    47947 8ud8:1D (2.6) BS09 MG ? GO:0002181 ... P60405 38359125
    47948 8ud8:1D (2.6) BS10 MG ? GO:0002181 ... P60405 38359125
    47949 8ud8:1D (2.6) BS11 MG ? GO:0002181 ... P60405 38359125
    47950 8ud8:1D (2.6) BS12 MG ? GO:0002181 ... P60405 38359125
    47951 8ud8:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    47952 8ud8:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    47953 8ud8:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    47954 8ud8:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    47955 8ud8:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    47956 8ud8:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    47957 8ud8:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    47958 8ud8:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    47959 8ud8:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    47960 8ud8:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    47961 8ud8:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    47962 8ud8:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    47963 8ud8:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    47964 8ud8:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    47965 8ud8:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 38359125
    47966 8ud8:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    47967 8ud8:1N (2.6) BS02 MG ? GO:0003729 ... P60488 38359125
    47968 8ud8:1N (2.6) BS03 MG ? GO:0003729 ... P60488 38359125
    47969 8ud8:1N (2.6) BS04 MG ? GO:0003729 ... P60488 38359125
    47970 8ud8:1N (2.6) BS05 MG ? GO:0003729 ... P60488 38359125
    47971 8ud8:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    47972 8ud8:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    47973 8ud8:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    47974 8ud8:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    47975 8ud8:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    47976 8ud8:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    47977 8ud8:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    47978 8ud8:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    47979 8ud8:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    47980 8ud8:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    47981 8ud8:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    47982 8ud8:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    47983 8ud8:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    47984 8ud8:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    47985 8ud8:1U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    47986 8ud8:1U (2.6) BS03 MG ? GO:0000027 ... P60491 38359125
    47987 8ud8:1U (2.6) BS04 MG ? GO:0000027 ... P60491 38359125
    47988 8ud8:1U (2.6) BS05 MG ? GO:0000027 ... P60491 38359125
    47989 8ud8:1U (2.6) BS06 MG ? GO:0000027 ... P60491 38359125
    47990 8ud8:1U (2.6) BS07 MG ? GO:0000027 ... P60491 38359125
    47991 8ud8:1U (2.6) BS08 MG ? GO:0000027 ... P60491 38359125
    47992 8ud8:1U (2.6) BS09 MG ? GO:0000027 ... P60491 38359125
    47993 8ud8:1U (2.6) BS10 MG ? GO:0000027 ... P60491 38359125
    47994 8ud8:1V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    47995 8ud8:1V (2.6) BS03 MG ? GO:0003723 ... P60492 38359125
    47996 8ud8:1V (2.6) BS04 MG ? GO:0003723 ... P60492 38359125
    47997 8ud8:1V (2.6) BS05 MG ? GO:0003723 ... P60492 38359125
    47998 8ud8:1V (2.6) BS06 MG ? GO:0003723 ... P60492 38359125
    47999 8ud8:1V (2.6) BS07 MG ? GO:0003723 ... P60492 38359125
    48000 8ud8:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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