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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47601 8tpl:B (3.46) BS02 MG ? GO:0005524 ... Q9CZP5 38821922
    47602 8tpl:F (3.46) BS02 MG ? GO:0005524 ... Q9CZP5 38821922
    47603 8tpl:G (3.46) BS02 MG ? GO:0005524 ... Q9CZP5 38821922
    47604 8tpv:A (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47605 8tpv:B (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47606 8tpv:C (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47607 8tpv:D (2.27) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47608 8tpy:A (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47609 8tpy:B (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47610 8tpy:C (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47611 8tpy:D (2.5) BS02 MG 2.4.2.8 GO:0000166 ... P00492 38651522
    47612 8tug:A (3.5) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47613 8tv5:C (4.6) BS01 MG N/A N/A P29317 N/A
    47614 8tvp:A (3.7) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47615 8tvq:A (4.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47616 8tvs:A (4.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47617 8tvv:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47618 8tvw:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47619 8tvx:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47620 8tvy:A (3.1) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    47621 8tw7:2 (3.8) BS02 MG N/A N/A P40348 N/A
    47622 8tw7:3 (3.8) BS02 MG N/A N/A P38629 N/A
    47623 8tw8:2 (3.5) BS02 MG N/A N/A P40348 N/A
    47624 8tw8:3 (3.5) BS02 MG N/A N/A P38629 N/A
    47625 8twa:2 (4.1) BS02 MG N/A N/A P40348 N/A
    47626 8twa:3 (4.1) BS02 MG N/A N/A P38629 N/A
    47627 8twb:2 (3.2) BS03 MG N/A N/A P40348 N/A
    47628 8twb:3 (3.2) BS02 MG N/A N/A P38629 N/A
    47629 8txm:A (3.25) BS01 MG N/A N/A C3W5S1 38935072
    47630 8txo:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    47631 8tym:B (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    47632 8tym:C (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    47633 8tym:c (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    47634 8tym:f (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    47635 8tyn:C (3.26) BS02 MG 3.6.5.5 N/A Q05193 38663399
    47636 8tyn:F (3.26) BS02 MG 3.6.5.5 N/A Q05193 38663399
    47637 8tzg:A (2.7) BS03 MG 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    47638 8u0p:A (1.9) BS04 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    47639 8u0p:A (1.9) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    47640 8u1h:F (3.0) BS02 MG N/A N/A A0A0M4U1P9 N/A
    47641 8u1l:A (3.7) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    47642 8u1l:B (3.7) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    47643 8u1m:A (3.5) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    47644 8u1m:B (3.5) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    47645 8u3b:D (3.23) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    47646 8u3y:A (3.1) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47647 8u3y:A (3.1) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47648 8u3y:A (3.1) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47649 8u3z:A (3.6) BS02 MG 3.6.5.- GO:0000226 ... P68363 38658656
    47650 8u3z:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    47651 8u66:A (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    47652 8u66:B (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    47653 8u66:C (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    47654 8u66:D (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    47655 8u66:E (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    47656 8u66:F (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    47657 8u66:G (2.21) BS01 MG N/A GO:0000287 ... N/A 37979578
    47658 8u66:H (2.21) BS02 MG N/A GO:0000287 ... N/A 37979578
    47659 8u6e:A (2.31) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47660 8u6i:A (2.46) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47661 8u6i:A (2.46) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47662 8u6j:B (2.64) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 37883896
    47663 8u6k:A (2.72) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47664 8u6k:B (2.72) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 37883896
    47665 8u6l:A (2.486) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47666 8u6l:B (2.486) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 37883896
    47667 8u6p:A (2.81) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47668 8u6s:A (2.99) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47669 8u6t:A (2.25) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37883896
    47670 8u6t:B (2.25) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 37883896
    47671 8u7n:B () BS01 MG N/A N/A N/A N/A
    47672 8u8v:E (2.74) BS04 MG N/A N/A O00411 39164235
    47673 8u9f:A (1.08) BS01 MG ? GO:0004553 ... Q8A889 38879612
    47674 8u9r:A (3.34) BS04 MG N/A N/A P04050 39190355
    47675 8u9r:A (3.34) BS05 MG N/A N/A P04050 39190355
    47676 8uae:M (3.25) BS02 MG N/A N/A N/A 38096827
    47677 8uae:N (3.25) BS02 MG N/A N/A N/A 38096827
    47678 8uaf:M (3.18) BS02 MG N/A N/A N/A 38096827
    47679 8uaf:P (3.18) BS01 MG N/A N/A N/A 38096827
    47680 8ubr:A (2.7) BS01 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    47681 8ubr:A (2.7) BS07 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    47682 8uce:A (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    47683 8uce:B (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    47684 8ucf:A (1.9) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47685 8ucg:A (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47686 8ucg:A (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47687 8ucg:A (1.86) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47688 8ucg:B (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47689 8ucg:B (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47690 8uch:A (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47691 8uch:A (2.14) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47692 8uci:A (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47693 8uci:B (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    47694 8ucu:A (2.85) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    47695 8ucv:A (3.81) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    47696 8ucw:A (3.64) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    47697 8ud6:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38359125
    47698 8ud6:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38359125
    47699 8ud6:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38359125
    47700 8ud6:11 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    47701 8ud6:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    47702 8ud6:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    47703 8ud6:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38359125
    47704 8ud6:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38359125
    47705 8ud6:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38359125
    47706 8ud6:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    47707 8ud6:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38359125
    47708 8ud6:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    47709 8ud6:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    47710 8ud6:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    47711 8ud6:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    47712 8ud6:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    47713 8ud6:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    47714 8ud6:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38359125
    47715 8ud6:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38359125
    47716 8ud6:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38359125
    47717 8ud6:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38359125
    47718 8ud6:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38359125
    47719 8ud6:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38359125
    47720 8ud6:1D (2.7) BS13 MG ? GO:0002181 ... P60405 38359125
    47721 8ud6:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    47722 8ud6:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    47723 8ud6:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    47724 8ud6:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    47725 8ud6:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    47726 8ud6:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    47727 8ud6:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    47728 8ud6:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    47729 8ud6:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    47730 8ud6:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    47731 8ud6:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    47732 8ud6:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    47733 8ud6:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 38359125
    47734 8ud6:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38359125
    47735 8ud6:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    47736 8ud6:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    47737 8ud6:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    47738 8ud6:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    47739 8ud6:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    47740 8ud6:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    47741 8ud6:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    47742 8ud6:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    47743 8ud6:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    47744 8ud6:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38359125
    47745 8ud6:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38359125
    47746 8ud6:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    47747 8ud6:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    47748 8ud6:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    47749 8ud6:1T (2.7) BS03 MG ? GO:0003735 ... P60490 38359125
    47750 8ud6:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    47751 8ud6:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38359125
    47752 8ud6:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38359125
    47753 8ud6:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38359125
    47754 8ud6:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38359125
    47755 8ud6:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38359125
    47756 8ud6:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38359125
    47757 8ud6:1U (2.7) BS09 MG ? GO:0000027 ... P60491 38359125
    47758 8ud6:1U (2.7) BS10 MG ? GO:0000027 ... P60491 38359125
    47759 8ud6:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    47760 8ud6:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38359125
    47761 8ud6:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38359125
    47762 8ud6:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38359125
    47763 8ud6:1V (2.7) BS06 MG ? GO:0003723 ... P60492 38359125
    47764 8ud6:1V (2.7) BS07 MG ? GO:0003723 ... P60492 38359125
    47765 8ud6:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    47766 8ud6:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    47767 8ud6:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    47768 8ud6:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    47769 8ud6:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    47770 8ud6:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    47771 8ud6:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    47772 8ud6:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    47773 8ud6:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    47774 8ud6:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    47775 8ud6:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    47776 8ud6:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38359125
    47777 8ud6:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    47778 8ud6:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    47779 8ud6:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38359125
    47780 8ud6:1t (2.7) BS02 MG ? GO:0003723 ... P80380 38359125
    47781 8ud6:21 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    47782 8ud6:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    47783 8ud6:27 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    47784 8ud6:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    47785 8ud6:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    47786 8ud6:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    47787 8ud6:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    47788 8ud6:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    47789 8ud6:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    47790 8ud6:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    47791 8ud6:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 38359125
    47792 8ud6:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    47793 8ud6:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    47794 8ud6:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    47795 8ud6:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    47796 8ud6:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    47797 8ud6:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    47798 8ud6:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38359125
    47799 8ud6:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    47800 8ud6:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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