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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47001 8sf7:GD (4.1) BS02 MG ? GO:0000226 ... P41352 38598282
    47002 8sf7:JA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47003 8sf7:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47004 8sf7:JE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47005 8sf7:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47006 8sf7:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47007 8sf7:JM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47008 8sf7:LC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47009 8sf7:LG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47010 8sf7:LH (4.1) BS01 MG ? GO:0000226 ... P41352 38598282
    47011 8sf7:LK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47012 8sf7:NC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47013 8sf7:NG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47014 8sf7:NK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47015 8sf7:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47016 8sf7:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47017 8sf7:QC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47018 8sf7:QG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47019 8sf7:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47020 8sf7:VM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47021 8sf7:WC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    47022 8sff:Q (3.2) BS02 MG ? GO:0002199 ... P50990 37852256
    47023 8sfo:A (3.3) BS04 MG N/A GO:0003677 ... U2UMQ6 N/A
    47024 8sfo:A (3.3) BS05 MG N/A GO:0003677 ... U2UMQ6 N/A
    47025 8sg9:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    47026 8sgc:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    47027 8sgc:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    47028 8sgl:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    47029 8sh9:q (2.7) BS02 MG ? GO:0002199 ... P50990 37852256
    47030 8shd:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    47031 8she:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    47032 8shf:q (3.0) BS02 MG ? GO:0002199 ... P50990 37852256
    47033 8shg:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    47034 8shl:Z (3.0) BS02 MG ? GO:0003723 ... P40227 37852256
    47035 8shn:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    47036 8sj0:A (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    47037 8sj0:C (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    47038 8sj1:A (2.81) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    47039 8sj1:C (2.81) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    47040 8sj2:A (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    47041 8sj2:C (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    47042 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 N/A
    47043 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 N/A
    47044 8sld:A (2.85) BS01 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    47045 8slf:B (2.9) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    47046 8slg:A (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    47047 8slg:B (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    47048 8slh:A (3.05) BS02 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    47049 8sm8:A (2.0) BS03 MG ? GO:0005737 ... B6JH23 38198693
    47050 8sm8:A (2.0) BS04 MG ? GO:0005737 ... B6JH23 38198693
    47051 8snb:AG (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47052 8snb:BI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47053 8snb:BK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47054 8snb:CA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47055 8snb:CB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47056 8snb:CI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47057 8snb:DB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47058 8snb:EA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47059 8snb:FG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47060 8snb:FI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47061 8snb:GA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47062 8snb:HA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47063 8snb:HG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47064 8snb:HK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47065 8snb:IE (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47066 8snb:II (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47067 8snb:KI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47068 8snb:LA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47069 8snb:LG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47070 8snb:ME (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47071 8snb:MG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47072 8snb:MK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47073 8snb:NA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47074 8snb:NG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47075 8snb:PE (3.3) BS04 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47076 8snb:PG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47077 8snb:PL (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47078 8snb:QG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47079 8snb:RA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47080 8snb:RB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47081 8snb:SA (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47082 8snb:SB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47083 8snb:TA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47084 8snb:TB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47085 8snb:TI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47086 8snb:UB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47087 8snb:UI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47088 8snb:UK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47089 8snb:VB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47090 8snb:VE (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47091 8snb:VI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47092 8snb:WB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47093 8snb:WI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    47094 8sng:A (1.55) BS02 MG 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    47095 8sng:B (1.55) BS02 MG 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    47096 8soq:A (3.1) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    47097 8sp3:B (3.52) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    47098 8sp3:F (3.52) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    47099 8spo:F (2.98) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    47100 8spo:L (2.98) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    47101 8spo:N (2.98) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    47102 8spq:A (3.26) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47103 8spq:A (3.26) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47104 8sq9:A (2.9) BS05 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 37890482
    47105 8sq9:A (2.9) BS06 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 37890482
    47106 8sqh:A (3.69) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47107 8sqh:A (3.69) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47108 8sqh:A (3.69) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47109 8sqj:A (3.06) BS05 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 37890482
    47110 8sqk:A (3.01) BS08 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 37890482
    47111 8sqo:A (1.55) BS01 MG 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    47112 8squ:B (3.28) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    47113 8sr7:A (1.97) BS03 MG ? GO:0005216 ... F2UB89 38773335
    47114 8sr7:A (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    47115 8sr7:A (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    47116 8sr7:B (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    47117 8sr7:B (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    47118 8sr7:B (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    47119 8sr7:C (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    47120 8sr7:C (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    47121 8sr7:C (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    47122 8sr7:D (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    47123 8sr7:D (1.97) BS07 MG ? GO:0005216 ... F2UB89 38773335
    47124 8sr7:D (1.97) BS08 MG ? GO:0005216 ... F2UB89 38773335
    47125 8sr9:A (3.05) BS01 MG ? GO:0005216 ... F2UB89 38773335
    47126 8sr9:A (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    47127 8sr9:B (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    47128 8sr9:B (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    47129 8sr9:C (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    47130 8sr9:C (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    47131 8sr9:D (3.05) BS04 MG ? GO:0005216 ... F2UB89 38773335
    47132 8sr9:D (3.05) BS05 MG ? GO:0005216 ... F2UB89 38773335
    47133 8srd:A (2.91) BS02 MG ? GO:0005216 ... F2UB89 N/A
    47134 8srd:B (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47135 8srd:C (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47136 8srd:D (2.91) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47137 8sre:A (2.52) BS02 MG ? GO:0005216 ... F2UB89 N/A
    47138 8sre:A (2.52) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47139 8sre:A (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47140 8sre:A (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47141 8sre:B (2.52) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47142 8sre:B (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47143 8sre:B (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47144 8sre:B (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47145 8sre:C (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47146 8sre:C (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47147 8sre:C (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47148 8sre:C (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    47149 8sre:D (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47150 8sre:D (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47151 8sre:D (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47152 8sre:D (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47153 8srf:A (2.52) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47154 8srf:A (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47155 8srf:A (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47156 8srf:A (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47157 8srf:B (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47158 8srf:B (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47159 8srf:B (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47160 8srf:B (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    47161 8srf:C (2.52) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47162 8srf:C (2.52) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47163 8srf:C (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47164 8srf:C (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    47165 8srf:D (2.52) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47166 8srf:D (2.52) BS08 MG ? GO:0005216 ... F2UB89 N/A
    47167 8srf:D (2.52) BS09 MG ? GO:0005216 ... F2UB89 N/A
    47168 8srf:D (2.52) BS10 MG ? GO:0005216 ... F2UB89 N/A
    47169 8srg:A (3.03) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47170 8srg:A (3.03) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47171 8srg:A (3.03) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47172 8srg:B (3.03) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47173 8srg:B (3.03) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47174 8srg:B (3.03) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47175 8srg:C (3.03) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47176 8srg:C (3.03) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47177 8srg:C (3.03) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47178 8srg:D (3.03) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47179 8srg:D (3.03) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47180 8srg:D (3.03) BS08 MG ? GO:0005216 ... F2UB89 N/A
    47181 8srh:A (3.79) BS02 MG ? GO:0005216 ... F2UB89 N/A
    47182 8srh:B (3.79) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47183 8srh:C (3.79) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47184 8srh:D (3.79) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47185 8sri:A (2.73) BS02 MG ? GO:0005216 ... F2UB89 N/A
    47186 8sri:A (2.73) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47187 8sri:A (2.73) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47188 8sri:B (2.73) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47189 8sri:B (2.73) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47190 8sri:B (2.73) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47191 8sri:C (2.73) BS03 MG ? GO:0005216 ... F2UB89 N/A
    47192 8sri:C (2.73) BS04 MG ? GO:0005216 ... F2UB89 N/A
    47193 8sri:C (2.73) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47194 8sri:D (2.73) BS05 MG ? GO:0005216 ... F2UB89 N/A
    47195 8sri:D (2.73) BS06 MG ? GO:0005216 ... F2UB89 N/A
    47196 8sri:D (2.73) BS07 MG ? GO:0005216 ... F2UB89 N/A
    47197 8srs:A (2.79) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47198 8srs:A (2.79) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    47199 8ssl:A (4.6) BS02 MG 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    47200 8stc:D (2.8) BS01 MG N/A GO:0005886 ... F9UST0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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