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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46601 8q29:A (1.5) BS02 MG ? N/A C5BSV8 38446458
    46602 8q29:B (1.5) BS02 MG ? N/A C5BSV8 38446458
    46603 8q2n:A (2.98) BS04 MG N/A N/A G3ECR3 N/A
    46604 8q2n:D (2.98) BS05 MG N/A N/A G3ECR3 N/A
    46605 8q3b:A (2.69) BS03 MG 2.7.7.6 GO:0000428 ... P42486 38383525
    46606 8q3i:D (3.11) BS03 MG N/A N/A A0QS66 N/A
    46607 8q3k:A (2.92) BS03 MG 2.7.7.6 GO:0000428 ... P42486 38383525
    46608 8q3o:E (3.0) BS02 MG 3.6.4.- GO:0003676 ... P0AG30 37645988
    46609 8q3v:B (2.08) BS01 MG N/A GO:0005886 ... Q59584 38530900
    46610 8q3v:R (2.08) BS02 MG N/A GO:0005886 ... Q59584 38530900
    46611 8q3v:b (2.08) BS01 MG N/A GO:0005886 ... Q59584 38530900
    46612 8q3w:D (3.18) BS02 MG N/A GO:0005524 ... Q45619 38926614
    46613 8q3w:G (3.18) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46614 8q45:O (2.7) BS02 MG ? GO:0005737 ... P34942 38870289
    46615 8q4d:A (3.62) BS06 MG N/A GO:0003677 ... Q45618 38926614
    46616 8q4d:B (3.62) BS06 MG N/A GO:0003677 ... Q45618 38926614
    46617 8q4d:F (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46618 8q4d:I (3.62) BS02 MG N/A GO:0005524 ... Q45619 38926614
    46619 8q4d:J (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46620 8q4d:M (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46621 8q4d:P (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46622 8q4d:S (3.62) BS02 MG N/A GO:0005524 ... Q45619 38926614
    46623 8q4d:T (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46624 8q4d:W (3.62) BS01 MG N/A GO:0005524 ... Q45619 38926614
    46625 8q4s:A (2.08) BS02 MG N/A N/A Q8YI30 N/A
    46626 8q54:B (2.39) BS01 MG N/A N/A Q59584 N/A
    46627 8q54:R (2.39) BS01 MG N/A N/A Q59584 N/A
    46628 8q54:b (2.39) BS01 MG N/A N/A Q59584 N/A
    46629 8q5i:AH (2.45) BS02 MG ? GO:0003735 ... A0A8H6F171 N/A
    46630 8q5i:AP (2.45) BS04 MG ? GO:0003735 ... A0A8H6BR69 N/A
    46631 8q5i:M (2.45) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    46632 8q5i:X (2.45) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    46633 8q5i:j (2.45) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    46634 8q5i:x (2.45) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    46635 8q5v:B (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46636 8q5v:C (2.74) BS02 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46637 8q5v:E (2.74) BS02 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46638 8q5v:F (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46639 8q5v:H (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46640 8q5v:J (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46641 8q5v:K (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46642 8q5v:M (2.74) BS03 MG 1.18.6.1 GO:0005524 ... P25767 38696373
    46643 8q6e:A (1.37) BS02 MG N/A N/A Q9GZT9 N/A
    46644 8q6e:A (1.37) BS03 MG N/A N/A Q9GZT9 N/A
    46645 8q6f:A (1.506) BS02 MG 2.7.1.67 GO:0016301 ... Q9UBF8 38033723
    46646 8q6g:A (1.541) BS02 MG 2.7.1.67 GO:0016301 ... Q9UBF8 38033723
    46647 8q6h:A (1.94) BS01 MG 2.7.1.67 GO:0016301 ... Q9UBF8 38033723
    46648 8q75:A (3.2) BS02 MG N/A GO:0005524 ... Q6H7M3 38538615
    46649 8q76:A (3.29) BS01 MG N/A GO:0005524 ... Q6H7M3 38538615
    46650 8q7z:Ak (2.5) BS02 MG N/A N/A Q98TH5 N/A
    46651 8q7z:An (2.5) BS02 MG N/A N/A Q5ZHW8 N/A
    46652 8q7z:BA (2.5) BS03 MG N/A N/A F1NIX0 N/A
    46653 8q7z:BA (2.5) BS04 MG N/A N/A F1NIX0 N/A
    46654 8q7z:BB (2.5) BS02 MG N/A N/A Q5ZJZ2 N/A
    46655 8q7z:BH (2.5) BS02 MG N/A N/A A0A1D5NVI1 N/A
    46656 8q7z:BI (2.5) BS03 MG N/A N/A Q08200 N/A
    46657 8q7z:BN (2.5) BS03 MG N/A N/A F1NQG5 N/A
    46658 8q7z:BS (2.5) BS03 MG N/A N/A F1NPD3 N/A
    46659 8q7z:Bb (2.5) BS02 MG N/A N/A A0A1L1RNZ2 N/A
    46660 8q7z:Bb (2.5) BS03 MG N/A N/A A0A1L1RNZ2 N/A
    46661 8q7z:Bb (2.5) BS04 MG N/A N/A A0A1L1RNZ2 N/A
    46662 8q7z:Be (2.5) BS02 MG N/A N/A E1BVB1 N/A
    46663 8q7z:Bf (2.5) BS02 MG N/A N/A A0A8V0YS49 N/A
    46664 8q7z:Bg (2.5) BS02 MG N/A N/A A0A1L1S0X5 N/A
    46665 8q7z:Bo (2.5) BS03 MG N/A N/A A0A8V0YUB1 N/A
    46666 8q87:AG (2.4) BS02 MG N/A N/A A0A8V0Z8V3 N/A
    46667 8q87:Ak (2.4) BS02 MG N/A N/A Q98TH5 N/A
    46668 8q87:At (2.4) BS02 MG N/A N/A F1NH93 N/A
    46669 8q87:BA (2.4) BS02 MG N/A N/A F1NIX0 N/A
    46670 8q87:BA (2.4) BS03 MG N/A N/A F1NIX0 N/A
    46671 8q87:BB (2.4) BS02 MG N/A N/A Q5ZJZ2 N/A
    46672 8q87:BB (2.4) BS03 MG N/A N/A Q5ZJZ2 N/A
    46673 8q87:BH (2.4) BS02 MG N/A N/A A0A1D5NVI1 N/A
    46674 8q87:BI (2.4) BS03 MG N/A N/A Q08200 N/A
    46675 8q87:BN (2.4) BS03 MG N/A N/A F1NQG5 N/A
    46676 8q87:BP (2.4) BS03 MG N/A N/A A0A1D5PR40 N/A
    46677 8q87:Bb (2.4) BS02 MG N/A N/A A0A1L1RNZ2 N/A
    46678 8q87:Bb (2.4) BS03 MG N/A N/A A0A1L1RNZ2 N/A
    46679 8q87:Be (2.4) BS02 MG N/A N/A E1BVB1 N/A
    46680 8q87:Be (2.4) BS03 MG N/A N/A E1BVB1 N/A
    46681 8q87:Bf (2.4) BS02 MG N/A N/A N/A N/A
    46682 8q87:Bg (2.4) BS02 MG N/A N/A A0A1L1S0X5 N/A
    46683 8q87:Bo (2.4) BS03 MG N/A N/A A0A8V0YUB1 N/A
    46684 8q8i:A (1.77) BS03 MG N/A N/A Q89410 N/A
    46685 8q8i:A (1.77) BS04 MG N/A N/A Q89410 N/A
    46686 8q8i:A (1.77) BS05 MG N/A N/A Q89410 N/A
    46687 8qbm:A (3.09) BS04 MG 2.7.7.49 GO:0003723 ... P23070 38788717
    46688 8qcc:A (1.9) BS03 MG N/A N/A B7LXC3 N/A
    46689 8qcc:B (1.9) BS03 MG N/A N/A B7LXC3 N/A
    46690 8qcc:B (1.9) BS04 MG N/A N/A B7LXC3 N/A
    46691 8qcg:A (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    46692 8qcg:B (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    46693 8qf1:A (1.32) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    46694 8qf1:B (1.32) BS01 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    46695 8qfe:A (1.5) BS02 MG ? GO:0004016 ... K9TLZ5 38185322
    46696 8qff:A (2.1) BS03 MG ? GO:0004016 ... K9TLZ5 38185322
    46697 8qff:A (2.1) BS04 MG ? GO:0004016 ... K9TLZ5 38185322
    46698 8qfg:A (1.7) BS03 MG ? GO:0004016 ... K9TLZ5 38185322
    46699 8qfg:A (1.7) BS04 MG ? GO:0004016 ... K9TLZ5 38185322
    46700 8qfh:A (1.8) BS03 MG ? GO:0004016 ... K9TLZ5 38185322
    46701 8qfh:A (1.8) BS04 MG ? GO:0004016 ... K9TLZ5 38185322
    46702 8qfi:A (1.9) BS03 MG ? GO:0004016 ... K9TLZ5 38185322
    46703 8qfi:A (1.9) BS04 MG ? GO:0004016 ... K9TLZ5 38185322
    46704 8qfj:A (1.9) BS03 MG ? GO:0004016 ... K9TLZ5 38185322
    46705 8qfj:A (1.9) BS04 MG ? GO:0004016 ... K9TLZ5 38185322
    46706 8qfm:B (1.9) BS03 MG ? GO:0005506 ... A0A840P3H4 38095354
    46707 8qfo:B (2.05) BS02 MG ? GO:0005506 ... A0A840P3H4 38095354
    46708 8qfp:B (2.2) BS01 MG ? GO:0005506 ... A0A840P3H4 38095354
    46709 8qfq:B (2.1) BS02 MG ? GO:0005506 ... A0A840P3H4 38095354
    46710 8qfs:C (2.7) BS02 MG ? GO:0003723 ... P0CE48 37923743
    46711 8qfw:A (2.0) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 38856179
    46712 8qfw:B (2.0) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 38856179
    46713 8qfx:A (1.6) BS04 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    46714 8qfx:B (1.6) BS03 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    46715 8qfx:C (1.6) BS04 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    46716 8qfx:D (1.6) BS03 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    46717 8qh3:A (2.81) BS02 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 38480734
    46718 8qhc:C (3.1) BS02 MG ? GO:0003723 ... P0CE48 37923743
    46719 8qhl:A (1.9) BS03 MG 3.4.15.1 GO:0006508 ... P12821 37904282
    46720 8qj0:L (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    46721 8qj0:M (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    46722 8qj0:N (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    46723 8qj0:O (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00875 38809540
    46724 8qlp:B (3.14) BS03 MG N/A GO:0003676 ... N/A 38224450
    46725 8qlp:F (3.14) BS03 MG N/A GO:0003676 ... N/A 38224450
    46726 8qlp:J (3.14) BS03 MG N/A GO:0003676 ... N/A 38224450
    46727 8qlp:N (3.14) BS03 MG N/A GO:0003676 ... N/A 38224450
    46728 8qm3:A (1.53) BS07 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    46729 8qm3:B (1.53) BS07 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    46730 8qmf:A (2.1) BS02 MG 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    46731 8qmf:B (2.1) BS03 MG 2.2.1.1 GO:0003824 ... Q7MDD4 38145310
    46732 8qoi:LN (1.9) BS03 MG ? GO:0002181 ... P61313 38844527
    46733 8qpt:A (1.8) BS01 MG N/A N/A W1QGT4 39178581
    46734 8qpt:B (1.8) BS01 MG N/A N/A W1QGT4 39178581
    46735 8qqe:A (3.461) BS02 MG N/A GO:0000150 ... Q14565 38828772
    46736 8qqr:A (2.73) BS03 MG N/A N/A A0QSU3 39107302
    46737 8qqr:D (2.73) BS03 MG N/A N/A A0QSU3 39107302
    46738 8qrk:B (6.69) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    46739 8qrl:B (3.34) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    46740 8qrm:B (3.05) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    46741 8qrn:7 (2.98) BS05 MG N/A GO:0003723 ... P46199 38969660
    46742 8qrn:B (2.98) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    46743 8qsj:M (3.0) BS02 MG ? GO:0003723 ... Q9P015 38042949
    46744 8qsj:z (3.0) BS03 MG ? GO:0003924 ... Q9BT17 38042949
    46745 8qvu:A (2.24) BS03 MG 3.6.5.2 GO:0000139 ... P01116 N/A
    46746 8qvu:E (2.24) BS03 MG 3.6.5.2 GO:0000139 ... P01116 N/A
    46747 8qw6:E (2.2) BS03 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    46748 8qw7:A (2.36) BS03 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    46749 8qw7:E (2.36) BS03 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    46750 8qws:A (1.6) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    46751 8qws:B (1.6) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    46752 8qwt:A (1.5) BS05 MG N/A N/A N/A 38824538
    46753 8qwt:A (1.5) BS06 MG N/A N/A N/A 38824538
    46754 8qxj:A (2.65) BS03 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46755 8qxj:B (2.65) BS05 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46756 8qxj:C (2.65) BS05 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46757 8qxj:D (2.65) BS07 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46758 8qxk:A (2.66) BS03 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46759 8qxk:B (2.66) BS05 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46760 8qxk:C (2.66) BS04 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46761 8qxk:D (2.66) BS07 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46762 8qxl:A (2.82) BS03 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46763 8qxl:B (2.82) BS05 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46764 8qxm:A (2.94) BS02 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46765 8qxm:C (2.94) BS05 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46766 8qxm:D (2.94) BS06 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46767 8qxn:A (2.98) BS03 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46768 8qxn:D (2.98) BS06 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    46769 8qxu:A (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46770 8qxu:B (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46771 8qxu:C (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46772 8qxu:D (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46773 8qxu:E (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46774 8qxu:H (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46775 8qxu:I (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46776 8qxu:J (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46777 8qxu:K (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46778 8qxu:L (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46779 8qxu:M (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46780 8qxu:N (12.0) BS02 MG N/A GO:0000287 ... P0A6F5 39169181
    46781 8qyg:B (1.15) BS03 MG ? GO:0000166 ... A0A6H0WK49 38946302
    46782 8qyp:A (2.759) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    46783 8qyq:A (2.61) BS03 MG ? GO:0003774 ... Q9BE39 38014327
    46784 8qyq:B (2.61) BS04 MG ? GO:0003774 ... Q9BE39 38014327
    46785 8qyr:B (1.8) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    46786 8qyu:A (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    46787 8qyu:B (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    46788 8qz8:B (3.13) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46789 8r0z:A (1.2) BS03 MG N/A N/A P31947 39172504
    46790 8r1a:B (26.8) BS02 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    46791 8r1a:D (26.8) BS02 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    46792 8r1a:F (26.8) BS02 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    46793 8r2h:A (2.42) BS01 MG 2.2.1.7 N/A Q8IDW0 39103329
    46794 8r2h:B (2.42) BS01 MG 2.2.1.7 N/A Q8IDW0 39103329
    46795 8r3k:B (3.43) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    46796 8r3k:B (3.43) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    46797 8r3o:A (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    46798 8r3o:B (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    46799 8r3o:C (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    46800 8r3o:D (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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