Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46401 8pen:J (3.1) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46402 8peu:M (3.7) BS02 MG N/A GO:0003723 ... P0AG30 N/A
    46403 8pew:K (4.3) BS02 MG N/A GO:0003723 ... P0AG30 N/A
    46404 8pew:L (4.3) BS03 MG N/A GO:0003723 ... P0AG30 N/A
    46405 8pex:A (3.1) BS02 MG N/A GO:0003723 ... P0AG30 N/A
    46406 8pex:N (3.1) BS02 MG N/A GO:0003723 ... P0AG30 N/A
    46407 8pfg:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46408 8pfj:J (3.4) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46409 8pfr:LH (2.15) BS03 MG N/A GO:0002181 ... P10664 N/A
    46410 8pfr:LH (2.15) BS04 MG N/A GO:0002181 ... P10664 N/A
    46411 8pfr:LN (2.15) BS03 MG N/A GO:0000027 ... P41805 N/A
    46412 8pfr:LN (2.15) BS04 MG N/A GO:0000027 ... P41805 N/A
    46413 8pfr:RA (2.15) BS02 MG N/A GO:0002181 ... P02406 N/A
    46414 8pfr:RE (2.15) BS02 MG N/A GO:0002181 ... P38061 N/A
    46415 8pfr:RI (2.15) BS02 MG N/A GO:0002181 ... P05745 N/A
    46416 8ph9:J (3.0) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46417 8phd:A (2.08) BS02 MG ? GO:0000287 ... O75794 37507029
    46418 8phd:C (2.08) BS02 MG ? GO:0000287 ... O75794 37507029
    46419 8phk:J (3.1) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46420 8phn:A (1.9) BS01 MG N/A N/A G0SBK1 38965424
    46421 8phx:A (1.5) BS01 MG N/A N/A Q5A872 38965424
    46422 8phx:B (1.5) BS01 MG N/A N/A Q5A872 38965424
    46423 8phx:C (1.5) BS01 MG N/A N/A Q5A872 38965424
    46424 8phx:D (1.5) BS01 MG N/A N/A Q5A872 38965424
    46425 8pib:J (2.6) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46426 8pid:J (3.0) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46427 8pil:J (3.2) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46428 8pim:J (3.4) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    46429 8pj1:V (3.4) BS03 MG N/A N/A P46782 N/A
    46430 8pj1:f (3.4) BS02 MG N/A N/A P62269 N/A
    46431 8pj1:t (3.4) BS03 MG N/A N/A P41091 N/A
    46432 8pj2:V (3.4) BS02 MG N/A N/A P46782 N/A
    46433 8pj2:f (3.4) BS03 MG N/A N/A P62269 N/A
    46434 8pj2:i (3.4) BS02 MG N/A N/A P62273 N/A
    46435 8pj2:i (3.4) BS03 MG N/A N/A P62273 N/A
    46436 8pj3:0 (3.7) BS04 MG N/A N/A O60841 N/A
    46437 8pj3:f (3.7) BS03 MG N/A N/A P62269 N/A
    46438 8pj4:0 (3.2) BS04 MG N/A N/A O60841 N/A
    46439 8pj4:f (3.2) BS03 MG N/A N/A P62269 N/A
    46440 8pj5:0 (2.9) BS03 MG N/A N/A O60841 N/A
    46441 8pj5:V (2.9) BS02 MG N/A N/A P46782 N/A
    46442 8pj5:f (2.9) BS03 MG N/A N/A P62269 N/A
    46443 8pj6:f (2.9) BS03 MG N/A N/A P62269 N/A
    46444 8pj6:i (2.9) BS02 MG N/A N/A P62273 N/A
    46445 8pj6:i (2.9) BS03 MG N/A N/A P62273 N/A
    46446 8pk0:z (3.03) BS03 MG ? GO:0003924 ... Q9BT17 38042949
    46447 8pk1:A (3.17) BS04 MG N/A GO:0004519 ... G3ECR3 N/A
    46448 8pk1:D (3.17) BS04 MG N/A GO:0004519 ... G3ECR3 N/A
    46449 8pk5:B (2.5) BS01 MG N/A GO:0005515 ... O15014
    Q96SY0    		 38906142
    46450 8pm0:B (2.9) BS02 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    46451 8pmd:A (2.95) BS03 MG 7.6.2.- GO:0000139 ... O95342 37949847
    46452 8pmd:A (2.95) BS04 MG 7.6.2.- GO:0000139 ... O95342 37949847
    46453 8pme:A (2.15) BS02 MG ? N/A A0A8K1DE77 38600265
    46454 8pme:B (2.15) BS02 MG ? N/A A0A8K1DE77 38600265
    46455 8pme:C (2.15) BS02 MG ? N/A A0A8K1DE77 38600265
    46456 8pmg:A (3.29) BS02 MG ? N/A B4XT64 38600265
    46457 8pmg:B (3.29) BS02 MG ? N/A B4XT64 38600265
    46458 8pmg:C (3.29) BS02 MG ? N/A B4XT64 38600265
    46459 8pmg:D (3.29) BS02 MG ? N/A B4XT64 38600265
    46460 8pmg:E (3.29) BS02 MG ? N/A B4XT64 38600265
    46461 8pmg:F (3.29) BS02 MG ? N/A B4XT64 38600265
    46462 8pmi:A (2.83) BS02 MG ? N/A B4XT64 38600265
    46463 8pmi:B (2.83) BS02 MG ? N/A B4XT64 38600265
    46464 8pmi:C (2.83) BS02 MG ? N/A B4XT64 38600265
    46465 8pmi:D (2.83) BS02 MG ? N/A B4XT64 38600265
    46466 8pmi:E (2.83) BS02 MG ? N/A B4XT64 38600265
    46467 8pmi:F (2.83) BS02 MG ? N/A B4XT64 38600265
    46468 8pmj:A (2.81) BS06 MG 7.6.2.- GO:0000139 ... O95342 37949847
    46469 8pmj:A (2.81) BS07 MG 7.6.2.- GO:0000139 ... O95342 37949847
    46470 8pml:A (2.95) BS02 MG ? N/A B4XT64 38600265
    46471 8pml:B (2.95) BS02 MG ? N/A B4XT64 38600265
    46472 8pml:C (2.95) BS02 MG ? N/A B4XT64 38600265
    46473 8pml:D (2.95) BS02 MG ? N/A B4XT64 38600265
    46474 8pml:E (2.95) BS02 MG ? N/A B4XT64 38600265
    46475 8pml:F (2.95) BS02 MG ? N/A B4XT64 38600265
    46476 8pmm:A (1.75) BS02 MG ? N/A B4XT64 38600265
    46477 8pmm:B (1.75) BS02 MG ? N/A B4XT64 38600265
    46478 8pmm:C (1.75) BS02 MG ? N/A B4XT64 38600265
    46479 8pn1:A (2.4) BS02 MG ? N/A B4XT64 38600265
    46480 8pn1:B (2.4) BS02 MG ? N/A B4XT64 38600265
    46481 8pn1:C (2.4) BS02 MG ? N/A B4XT64 38600265
    46482 8pn1:D (2.4) BS02 MG ? N/A B4XT64 38600265
    46483 8pn1:E (2.4) BS02 MG ? N/A B4XT64 38600265
    46484 8pn1:F (2.4) BS02 MG ? N/A B4XT64 38600265
    46485 8pn2:A (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    46486 8pn2:B (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    46487 8pn2:C (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    46488 8pn2:D (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    46489 8pn2:E (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    46490 8pn2:F (2.63) BS02 MG ? GO:0005634 ... B4XT64 38600265
    46491 8pne:A (1.9) BS01 MG N/A GO:0000287 ... P0A8Y3 N/A
    46492 8pno:A (2.2) BS02 MG N/A GO:0000287 ... P0A8Y3 N/A
    46493 8pno:B (2.2) BS02 MG N/A GO:0000287 ... P0A8Y3 N/A
    46494 8pnq:B (2.88) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    46495 8pnq:B (2.88) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    46496 8po4:B (1.621) BS02 MG 2.7.10.1 N/A P00533 38770784
    46497 8po8:B (2.52) BS04 MG 3.6.4.13 GO:0003676 ... P43329 38412313
    46498 8po9:A (2.2) BS03 MG ? N/A Q24995 37729416
    46499 8po9:B (2.2) BS03 MG ? N/A Q24995 37729416
    46500 8po9:C (2.2) BS03 MG ? N/A Q24995 37729416
    46501 8po9:E (2.2) BS02 MG ? N/A Q24995 37729416
    46502 8po9:F (2.2) BS02 MG ? N/A Q24995 37729416
    46503 8pou:L (1.65) BS02 MG 1.12.99.6 GO:0005515 ... P31891 37860641
    46504 8pov:L (1.92) BS02 MG 1.12.99.6 GO:0005515 ... P31891 37860641
    46505 8pow:L (1.61) BS02 MG 1.12.99.6 GO:0005515 ... P31891 37860641
    46506 8pox:L (1.6) BS02 MG N/A N/A P31891 37860641
    46507 8poz:L (1.65) BS02 MG N/A N/A P31891 37860641
    46508 8ppl:AF (2.65) BS02 MG ? GO:0000028 ... P46782 37802027
    46509 8ppl:AS (2.65) BS02 MG ? GO:0002181 ... P62269 37802027
    46510 8ppl:AS (2.65) BS03 MG ? GO:0002181 ... P62269 37802027
    46511 8ppl:It (2.65) BS03 MG 3.6.5.3 GO:0000049 ... P41091 37802027
    46512 8pps:A (2.3) BS01 MG ? N/A Q9I580 N/A
    46513 8pps:B (2.3) BS01 MG ? N/A Q9I580 N/A
    46514 8ppt:A (2.9) BS02 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    46515 8ppt:A (2.9) BS03 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    46516 8ppt:B (2.9) BS05 MG 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    46517 8ppu:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    46518 8ppu:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    46519 8ppu:B (3.02) BS06 MG 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    46520 8ppv:A (3.02) BS02 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    46521 8ppv:A (3.02) BS03 MG 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 38097591
    46522 8ppv:B (3.02) BS05 MG 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 38097591
    46523 8pqw:A (4.2) BS02 MG ? GO:0003723 ... Q14204 38547289
    46524 8pqw:A (4.2) BS04 MG ? GO:0003723 ... Q14204 38547289
    46525 8pqy:A (3.8) BS02 MG ? GO:0003723 ... Q14204 38547289
    46526 8pqy:A (3.8) BS04 MG ? GO:0003723 ... Q14204 38547289
    46527 8psn:B (2.73) BS03 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46528 8psn:B (2.73) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46529 8pso:B (2.4) BS03 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46530 8pso:B (2.4) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46531 8psq:B (2.65) BS02 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46532 8pss:B (2.83) BS02 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46533 8psx:B (2.96) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46534 8psx:B (2.96) BS05 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46535 8psz:B (2.42) BS05 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46536 8psz:B (2.42) BS06 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46537 8pt6:B (3.03) BS03 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46538 8pt6:B (3.03) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46539 8pt7:B (2.8) BS02 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    46540 8ptg:B (2.9) BS04 MG 3.6.4.- GO:0003676 ... P0AG30 38622114
    46541 8ptt:A (2.5) BS02 MG N/A GO:0000287 ... Q9UKK9 N/A
    46542 8ptt:B (2.5) BS03 MG N/A GO:0000287 ... Q9UKK9 N/A
    46543 8ptt:B (2.5) BS04 MG N/A GO:0000287 ... Q9UKK9 N/A
    46544 8ptt:C (2.5) BS02 MG N/A GO:0000287 ... Q9UKK9 N/A
    46545 8ptt:D (2.5) BS03 MG N/A GO:0000287 ... Q9UKK9 N/A
    46546 8pu1:B (1.702) BS01 MG N/A GO:0015970 ... A0A3E3DY42 N/A
    46547 8pu4:C (2.62) BS02 MG N/A GO:0015970 ... A0A3E3DY42 N/A
    46548 8pv1:CH (2.56) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46549 8pv1:Cd (2.56) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46550 8pv1:Cd (2.56) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46551 8pv2:CH (2.63) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46552 8pv2:Cd (2.63) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46553 8pv2:Cd (2.63) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46554 8pv3:CH (2.8) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46555 8pv3:Cd (2.8) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    46556 8pv3:Cd (2.8) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46557 8pv4:CH (2.9) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46558 8pv4:Cd (2.9) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46559 8pv4:Cd (2.9) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46560 8pv5:CH (2.86) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46561 8pv5:Cd (2.86) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46562 8pv5:Cd (2.86) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46563 8pv6:CH (2.94) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46564 8pv6:Cd (2.94) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46565 8pv6:Cd (2.94) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46566 8pv7:CH (2.12) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46567 8pv7:Cd (2.12) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46568 8pv7:Cd (2.12) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46569 8pv8:CH (2.91) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46570 8pv8:Cd (2.91) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46571 8pvk:CH (2.55) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46572 8pvk:Cd (2.55) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46573 8pvk:Cd (2.55) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    46574 8pvl:CH (2.19) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    46575 8pvl:Cd (2.19) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    46576 8pvl:Cd (2.19) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    46577 8pvm:A (1.38) BS08 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    46578 8pvm:B (1.38) BS09 MG 1.12.7.2 GO:0005506 ... P29166 37983562
    46579 8pvv:A (2.81) BS03 MG ? GO:0003676 ... O28951 38197228
    46580 8pw5:a (3.6) BS04 MG 7.1.1.9 GO:0001666 ... P00397 38575788
    46581 8pw5:n (3.6) BS04 MG 7.1.1.9 GO:0001666 ... P00397 38575788
    46582 8pw5:o (3.6) BS02 MG 7.1.1.9 GO:0001666 ... P00405 38575788
    46583 8pwa:B (2.1) BS01 MG ? N/A Q9HCE5 38470714
    46584 8px9:A (2.8) BS01 MG ? GO:0005524 ... Q9X2W0 37828292
    46585 8px9:B (2.8) BS03 MG ? GO:0005524 ... Q9X2W0 37828292
    46586 8pzu:B (3.5) BS01 MG N/A N/A P77774 39218969
    46587 8pzv:B (2.9) BS01 MG N/A N/A P77774 39218969
    46588 8q1c:A (1.679) BS01 MG N/A N/A A0A0A7T4I1 39068257
    46589 8q1c:B (1.679) BS01 MG N/A N/A A0A0A7T4I1 39068257
    46590 8q1d:A (1.75) BS02 MG N/A N/A P71447 39068257
    46591 8q1e:A (1.23) BS02 MG N/A N/A A0A0A7T4I1 39068257
    46592 8q1e:A (1.23) BS03 MG N/A N/A A0A0A7T4I1 39068257
    46593 8q1f:A (1.01) BS02 MG N/A N/A A0A0A7T4I1 39068257
    46594 8q1f:A (1.01) BS03 MG N/A N/A A0A0A7T4I1 39068257
    46595 8q1f:B (1.01) BS02 MG N/A N/A A0A0A7T4I1 39068257
    46596 8q1f:B (1.01) BS03 MG N/A N/A A0A0A7T4I1 39068257
    46597 8q1x:A (1.85) BS03 MG 3.1.16.1 GO:0003824 ... Q8IV08 37994783
    46598 8q26:A (1.9) BS03 MG N/A N/A P30419 N/A
    46599 8q28:A (1.8) BS02 MG ? N/A C5BSV8 38446458
    46600 8q28:B (1.8) BS02 MG ? N/A C5BSV8 38446458
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218