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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46001 8k7b:B (3.9) BS03 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    46002 8k7c:A (3.9) BS02 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    46003 8k7c:B (3.9) BS03 MG 7.6.2.5 GO:0005524 ... Q9NP58 37735522
    46004 8k82:LN (3.0) BS03 MG N/A GO:0002181 ... P05748 38942792
    46005 8k87:A (2.9) BS03 MG N/A GO:0003674 ... Q74DF5 38923459
    46006 8k87:F (2.9) BS03 MG N/A GO:0003674 ... Q74DF5 38923459
    46007 8k88:A (2.6) BS03 MG N/A GO:0003674 ... Q74DF5 38923459
    46008 8k8s:A (3.06) BS03 MG N/A GO:0003677 ... A0A7H0DN44 38579705
    46009 8k8u:A (3.05) BS03 MG N/A GO:0003677 ... A0A7H0DN44 38579705
    46010 8k8u:A (3.05) BS04 MG N/A GO:0003677 ... A0A7H0DN44 38579705
    46011 8k9f:B (2.9) BS07 MG ? N/A A9WEV3 38299372
    46012 8ka1:F (2.82) BS01 MG N/A GO:0000086 ... P0DP24 39043696
    46013 8ka1:F (2.82) BS02 MG N/A GO:0000086 ... P0DP24 39043696
    46014 8ka1:F (2.82) BS03 MG N/A GO:0000086 ... P0DP24 39043696
    46015 8kb8:C (2.49) BS01 MG N/A N/A P51149 N/A
    46016 8kb8:D (2.49) BS01 MG N/A N/A P51149 N/A
    46017 8kce:A (1.05) BS02 MG N/A N/A A0A1D1V463 N/A
    46018 8kci:A (3.94) BS03 MG N/A GO:0005524 ... O15440 38844452
    46019 8kci:A (3.94) BS04 MG N/A GO:0005524 ... O15440 38844452
    46020 8kda:E (3.19) BS02 MG N/A N/A D3DIV8 N/A
    46021 8kdb:A (2.7) BS01 MG 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... O89238 38605025
    46022 8ke1:A (2.50082) BS03 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    46023 8ke2:A (2.1964) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    46024 8ke3:A (1.89981) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    46025 8ke4:A (1.75051) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    46026 8ke5:A (1.90007) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    46027 8ke6:A (1.89571) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    46028 8kfd:A (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    46029 8kfd:A (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    46030 8kg6:5 (3.07) BS05 MG 3.6.4.12 GO:0000727 ... P29496 37730685
    46031 8kg9:2 (4.52) BS03 MG 3.6.4.12 GO:0000727 ... P29469 37730685
    46032 8kg9:5 (4.52) BS04 MG 3.6.4.12 GO:0000727 ... P29496 37730685
    46033 8kg9:7 (4.52) BS03 MG 3.6.4.12 GO:0000727 ... P38132 37730685
    46034 8kgr:B (3.2) BS03 MG 5.6.2.2 GO:0000166 ... A0A2X0THW2 38816407
    46035 8kih:A (2.0) BS02 MG N/A N/A N/A N/A
    46036 8oeq:0 (3.3) BS03 MG N/A N/A A0A8H6BZJ3 N/A
    46037 8oeq:8 (3.3) BS03 MG N/A N/A A0A8H6F6A1 N/A
    46038 8oeq:9 (3.3) BS03 MG N/A N/A A0A8H6F3X2 N/A
    46039 8oeq:AB (3.3) BS02 MG N/A N/A A0A8H6BVY8 N/A
    46040 8oeq:AF (3.3) BS02 MG N/A N/A O94008 N/A
    46041 8oeq:AG (3.3) BS02 MG N/A N/A A0A8H6BW57 N/A
    46042 8oeq:AH (3.3) BS02 MG N/A N/A A0A8H6F171 N/A
    46043 8oeq:AH (3.3) BS04 MG N/A N/A A0A8H6F171 N/A
    46044 8oeq:AH (3.3) BS05 MG N/A N/A A0A8H6F171 N/A
    46045 8oeq:AM (3.3) BS03 MG N/A N/A Q96W55 N/A
    46046 8oeq:AP (3.3) BS04 MG N/A N/A A0A8H6BR69 N/A
    46047 8oeq:AR (3.3) BS02 MG N/A N/A A0A8H6C3E7 N/A
    46048 8oeq:AW (3.3) BS03 MG N/A N/A A0A8H6F1X9 N/A
    46049 8oeq:AW (3.3) BS04 MG N/A N/A A0A8H6F1X9 N/A
    46050 8oeq:AW (3.3) BS05 MG N/A N/A A0A8H6F1X9 N/A
    46051 8oeq:BE (3.3) BS03 MG N/A N/A Q5AIB8 N/A
    46052 8oeq:BG (3.3) BS04 MG N/A N/A A0A8H6F5V7 N/A
    46053 8oeq:BI (3.3) BS03 MG N/A N/A Q5A6R1 N/A
    46054 8oeq:BI (3.3) BS04 MG N/A N/A Q5A6R1 N/A
    46055 8oeq:BK (3.3) BS03 MG N/A N/A A0A8H6BUG0 N/A
    46056 8oeq:BS (3.3) BS03 MG N/A N/A A0A8H6F6A1 N/A
    46057 8oeq:BZ (3.3) BS02 MG N/A N/A O94008 N/A
    46058 8oeq:BZ (3.3) BS03 MG N/A N/A O94008 N/A
    46059 8oeq:CW (3.3) BS02 MG N/A N/A A0A8H6F1X2 N/A
    46060 8oeq:DB (3.3) BS02 MG N/A N/A A0A8H6F0V4 N/A
    46061 8oeq:DC (3.3) BS02 MG N/A N/A A0A1D8PK22 N/A
    46062 8oeq:DQ (3.3) BS02 MG N/A N/A A0A1D8PTR4 N/A
    46063 8oeq:F (3.3) BS02 MG N/A N/A A0A8H6BYS1 N/A
    46064 8oeq:H (3.3) BS02 MG N/A N/A A0A8H6BS29 N/A
    46065 8oeq:I (3.3) BS02 MG N/A N/A A0A8H6BZ37 N/A
    46066 8oeq:K (3.3) BS03 MG N/A N/A A0A8H6F0S0 N/A
    46067 8oeq:Q (3.3) BS03 MG N/A N/A A0A8H6F0V4 N/A
    46068 8oeq:V (3.3) BS02 MG N/A N/A A0A8H6C5L4 N/A
    46069 8oeq:Y (3.3) BS02 MG N/A N/A A0A8H6F0N4 N/A
    46070 8oeq:Y (3.3) BS03 MG N/A N/A A0A8H6F0N4 N/A
    46071 8oeq:Z (3.3) BS02 MG N/A N/A A0A8H6F0V0 N/A
    46072 8oeq:j (3.3) BS03 MG N/A N/A A0A8H6F1X9 N/A
    46073 8oeq:j (3.3) BS04 MG N/A N/A A0A8H6F1X9 N/A
    46074 8oeq:k (3.3) BS02 MG N/A N/A Q59LS1 N/A
    46075 8oeq:k (3.3) BS03 MG N/A N/A Q59LS1 N/A
    46076 8oeq:k (3.3) BS04 MG N/A N/A Q59LS1 N/A
    46077 8oeq:r (3.3) BS03 MG N/A N/A Q5AIB8 N/A
    46078 8oeq:r (3.3) BS04 MG N/A N/A Q5AIB8 N/A
    46079 8oeq:u (3.3) BS02 MG N/A N/A A0A8H6F332 N/A
    46080 8oeq:v (3.3) BS03 MG N/A N/A Q5A6R1 N/A
    46081 8oeq:v (3.3) BS04 MG N/A N/A Q5A6R1 N/A
    46082 8oeq:v (3.3) BS05 MG N/A N/A Q5A6R1 N/A
    46083 8oeq:w (3.3) BS02 MG N/A N/A A0A8H6BZ56 N/A
    46084 8oeq:x (3.3) BS03 MG N/A N/A A0A8H6BUG0 N/A
    46085 8oeq:x (3.3) BS04 MG N/A N/A A0A8H6BUG0 N/A
    46086 8oeq:z (3.3) BS03 MG N/A N/A A0A1D8PK40 N/A
    46087 8oeu:A (3.04) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    46088 8oev:A (2.86) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    46089 8oew:A (2.8) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    46090 8of0:A (3.05) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37932450
    46091 8of5:A (1.97) BS02 MG 2.7.11.1 GO:0004672 ... O14965 N/A
    46092 8ogc:A (2.09) BS01 MG 2.7.11.1 GO:0016567 ... Q9Y4B6 37465299
    46093 8ogh:A (1.6) BS02 MG 2.2.1.7 GO:0003824 ... P9WNS3 N/A
    46094 8ogh:B (1.6) BS02 MG 2.2.1.7 GO:0003824 ... P9WNS3 N/A
    46095 8ohz:G (2.65) BS01 MG ? GO:0000502 ... P21243 38109686
    46096 8ohz:K (2.65) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38109686
    46097 8ohz:V (2.65) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38109686
    46098 8ohz:Y (2.65) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38109686
    46099 8ohz:Z (2.65) BS02 MG ? GO:0000502 ... P23724 38109686
    46100 8oi1:G (2.95) BS01 MG ? GO:0000502 ... P21243 38109686
    46101 8oi1:K (2.95) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38109686
    46102 8oi1:N (2.95) BS01 MG 3.4.25.1 GO:0000502 ... P38624 38109686
    46103 8oi1:V (2.95) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38109686
    46104 8oi1:Y (2.95) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38109686
    46105 8oi1:Z (2.95) BS02 MG ? GO:0000502 ... P23724 38109686
    46106 8oi7:A (1.85) BS02 MG ? GO:0005829 ... A2FTT0 37482279
    46107 8oi7:B (1.85) BS02 MG ? GO:0005829 ... A2FTT0 37482279
    46108 8oi9:A (1.95) BS04 MG ? GO:0005829 ... A2FTT0 37482279
    46109 8oi9:B (1.95) BS03 MG ? GO:0005829 ... A2FTT0 37482279
    46110 8oin:Ab (3.6) BS02 MG ? GO:0003735 ... F1S001 37141370
    46111 8oin:Bq (3.6) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    46112 8oip:Ab (3.6) BS02 MG ? GO:0003735 ... F1S001 37141370
    46113 8oiq:Bq (3.5) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    46114 8oir:Ab (3.1) BS02 MG ? GO:0003735 ... Q9Y399 37141370
    46115 8oir:Ad (3.1) BS03 MG ? GO:0003723 ... P82675 37141370
    46116 8ois:Ab (3.0) BS02 MG ? GO:0003735 ... Q9Y399 37141370
    46117 8ois:Ad (3.0) BS02 MG ? GO:0003723 ... P82675 37141370
    46118 8oj6:A (2.41) BS03 MG 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    46119 8oj7:A (2.46) BS03 MG 2.7.7.7
    3.1.26.4    		 GO:0000166 ... P04293 38806233
    46120 8ojm:A (1.8) BS03 MG ? GO:0030246 ... P17931 37658813
    46121 8ojm:A (1.8) BS04 MG ? GO:0030246 ... P17931 37658813
    46122 8ojo:A (1.8) BS01 MG ? GO:0030246 ... P17931 37658813
    46123 8ok9:A (2.5) BS03 MG ? GO:0003676 ... O28951 38197228
    46124 8oki:A (3.45) BS04 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    46125 8olr:G (2.8) BS01 MG ? GO:0000502 ... P21243 38029352
    46126 8olr:I (2.8) BS01 MG ? GO:0000502 ... P25451 38029352
    46127 8olr:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 38029352
    46128 8olr:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 38029352
    46129 8olr:W (2.8) BS01 MG ? GO:0000502 ... P25451 38029352
    46130 8olr:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 38029352
    46131 8olr:Z (2.8) BS01 MG ? GO:0000502 ... P23724 38029352
    46132 8om2:B (2.57) BS02 MG ? GO:0003735 ... P32902 38199006
    46133 8om3:B (2.87) BS02 MG ? GO:0003735 ... P32902 38199006
    46134 8om4:B (2.32) BS02 MG ? GO:0003735 ... P32902 38199006
    46135 8om5:A (3.52) BS02 MG ? GO:0000287 ... P43246 N/A
    46136 8om5:B (3.52) BS02 MG ? GO:0003677 ... P20585 N/A
    46137 8oma:B (3.29) BS03 MG ? GO:0003677 ... P20585 N/A
    46138 8omo:A (3.43) BS02 MG ? GO:0000287 ... P43246 N/A
    46139 8omo:B (3.43) BS03 MG ? GO:0003677 ... P20585 N/A
    46140 8omq:A (3.11) BS03 MG ? GO:0000287 ... P43246 N/A
    46141 8omq:B (3.11) BS02 MG ? GO:0003677 ... P20585 N/A
    46142 8ood:A (1.497) BS01 MG 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    46143 8ooi:A (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    46144 8ooi:B (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    46145 8ooi:C (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    46146 8ooi:D (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    46147 8ooi:E (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    46148 8ooi:F (2.61) BS03 MG 3.6.4.6 GO:0000502 ... P55072 38326645
    46149 8ooq:B (2.91) BS01 MG N/A GO:0003824 ... N/A 38243071
    46150 8ooq:J (2.91) BS02 MG N/A GO:0003824 ... N/A 38243071
    46151 8ooq:P (2.91) BS01 MG N/A GO:0003824 ... N/A 38243071
    46152 8ooq:S (2.91) BS01 MG N/A GO:0003824 ... N/A 38243071
    46153 8ooq:T (2.91) BS01 MG N/A GO:0003824 ... N/A 38243071
    46154 8ooq:T (2.91) BS02 MG N/A GO:0003824 ... N/A 38243071
    46155 8ooq:b (2.91) BS01 MG N/A GO:0003824 ... N/A 38243071
    46156 8oow:A (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46157 8oow:B (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46158 8oow:C (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46159 8oow:D (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46160 8oow:E (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46161 8oow:F (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46162 8oow:G (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46163 8oow:H (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46164 8oow:I (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46165 8oow:J (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46166 8oow:K (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46167 8oow:L (2.64) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46168 8oox:A (3.09) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46169 8oox:B (3.09) BS01 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46170 8ooz:A (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46171 8ooz:B (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46172 8ooz:C (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46173 8ooz:C (2.7) BS03 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46174 8ooz:D (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46175 8ooz:E (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46176 8ooz:F (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46177 8ooz:F (2.7) BS03 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46178 8ooz:G (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46179 8ooz:H (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46180 8ooz:I (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46181 8ooz:J (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46182 8ooz:K (2.7) BS03 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46183 8ooz:L (2.7) BS02 MG 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    46184 8orq:A (3.2) BS01 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    46185 8oru:AAA (2.23) BS04 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46186 8oru:AAA (2.23) BS05 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46187 8oru:BBB (2.23) BS03 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46188 8oru:BBB (2.23) BS04 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46189 8oru:CCC (2.23) BS03 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46190 8oru:CCC (2.23) BS04 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46191 8oru:DDD (2.23) BS04 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46192 8oru:DDD (2.23) BS05 MG 6.5.1.9 GO:0005524 ... O93732 38045033
    46193 8osm:A (2.05) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38647362
    46194 8osn:A (1.8) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38647362
    46195 8otz:CA (3.6) BS02 MG 3.6.5.- GO:0000226 ... Q32KN8 37327785
    46196 8otz:CC (3.6) BS02 MG 3.6.5.- GO:0000226 ... Q32KN8 37327785
    46197 8otz:CE (3.6) BS02 MG 3.6.5.- GO:0000226 ... Q32KN8 37327785
    46198 8otz:CG (3.6) BS02 MG 3.6.5.- GO:0000226 ... Q32KN8 37327785
    46199 8otz:CI (3.6) BS02 MG 3.6.5.- GO:0000226 ... Q32KN8 37327785
    46200 8otz:CK (3.6) BS02 MG 3.6.5.- GO:0000226 ... Q32KN8 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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