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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45401 8hmr:A (2.6) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45402 8hmr:B (2.6) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45403 8hmr:C (2.6) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45404 8hmr:D (2.6) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45405 8hms:A (2.1) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45406 8hms:A (2.1) BS04 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45407 8hms:B (2.1) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45408 8hms:C (2.1) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45409 8hms:D (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45410 8hmu:A (2.5) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45411 8hmu:A (2.5) BS04 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45412 8hmu:B (2.5) BS04 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45413 8hmu:C (2.5) BS04 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45414 8hmu:C (2.5) BS05 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45415 8hmu:D (2.5) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45416 8hmu:D (2.5) BS04 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    45417 8hp4:A (2.52) BS02 MG ? GO:0000287 ... C5MDS4 N/A
    45418 8hp4:B (2.52) BS03 MG ? GO:0000287 ... C5MDS4 N/A
    45419 8hpr:C (3.75) BS02 MG ? GO:0005524 ... A0R2C0 37619560
    45420 8hpr:D (3.75) BS03 MG ? GO:0005524 ... A0R2C0 37619560
    45421 8hps:C (3.51) BS02 MG ? GO:0005524 ... A0R2C0 37619560
    45422 8hps:D (3.51) BS03 MG ? GO:0005524 ... A0R2C0 37619560
    45423 8hq3:A (2.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 37595020
    45424 8hq4:A (2.12) BS01 MG 3.6.5.- GO:0000054 ... P62826 N/A
    45425 8hq5:A (2.25) BS01 MG 3.6.5.- GO:0000054 ... P62826 N/A
    45426 8hq6:A (2.03) BS01 MG 3.6.5.- GO:0000054 ... P62826 37595020
    45427 8hq9:D (2.7) BS01 MG ? GO:0015914 ... P64604 38347327
    45428 8hs0:A (1.42) BS02 MG 4.2.1.9 GO:0003824 ... Q9LIR4 N/A
    45429 8hsg:J (3.2) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    45430 8hsh:J (3.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    45431 8hsj:A (3.6) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45432 8hsj:B (3.6) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45433 8hsj:C (3.6) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45434 8hsl:A (5.8) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45435 8hsl:B (5.8) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45436 8hsl:D (5.8) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45437 8hsl:J (5.8) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    45438 8hsr:C (4.0) BS03 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45439 8hsr:D (4.0) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    45440 8hsr:J (4.0) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    45441 8htg:A (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    45442 8htg:B (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    45443 8htg:C (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    45444 8htg:D (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    45445 8huf:A (2.29) BS01 MG 3.6.5.- GO:0000054 ... P62826 38105606
    45446 8hug:A (2.15) BS01 MG 3.6.5.- GO:0000054 ... P62826 38105606
    45447 8hvr:D (3.35) BS03 MG 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    45448 8hx6:A (2.14) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45449 8hx7:A (1.95) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45450 8hx7:A (1.95) BS03 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45451 8hx7:B (1.95) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45452 8hx8:A (2.55) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45453 8hx8:A (2.55) BS03 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45454 8hx9:A (2.03) BS03 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45455 8hx9:B (2.03) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    45456 8hyj:A (4.3) BS03 MG 2.7.7.6 GO:0000418 ... Q5D869 37253723
    45457 8i01:A (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45458 8i01:A (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45459 8i01:B (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45460 8i01:B (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45461 8i01:C (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45462 8i01:C (2.15) BS07 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45463 8i01:D (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45464 8i01:D (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45465 8i01:E (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45466 8i01:E (2.15) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45467 8i01:F (2.15) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45468 8i01:F (2.15) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45469 8i05:A (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45470 8i05:A (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45471 8i05:B (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45472 8i05:B (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45473 8i05:C (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45474 8i05:C (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45475 8i05:D (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45476 8i05:D (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45477 8i05:E (2.09) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45478 8i05:E (2.09) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45479 8i05:F (2.09) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45480 8i05:F (2.09) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45481 8i07:A (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45482 8i07:A (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45483 8i07:B (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45484 8i07:B (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45485 8i07:C (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45486 8i07:C (1.99) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45487 8i07:D (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45488 8i07:D (1.99) BS07 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45489 8i07:E (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45490 8i07:E (1.99) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45491 8i07:F (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45492 8i07:F (1.99) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45493 8i08:A (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45494 8i08:A (1.91) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45495 8i08:B (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45496 8i08:B (1.91) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45497 8i08:C (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45498 8i08:C (1.91) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45499 8i08:D (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45500 8i08:D (1.91) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45501 8i08:E (1.91) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45502 8i08:E (1.91) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45503 8i08:F (1.91) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45504 8i08:F (1.91) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    45505 8i0k:A (2.86) BS01 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    45506 8i0k:B (2.86) BS02 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    45507 8i0p:C (3.4) BS02 MG N/A GO:0000398 ... Q15029 39068178
    45508 8i0s:C (4.2) BS03 MG N/A GO:0000398 ... Q15029 39068178
    45509 8i1u:B (3.24) BS02 MG ? GO:0002199 ... P78371 38307855
    45510 8i23:D (3.03) BS05 MG 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    45511 8i24:D (3.36) BS05 MG 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    45512 8i3a:A (3.04) BS02 MG ? GO:0005524 ... Q84TH5 37666961
    45513 8i3a:B (3.04) BS03 MG ? GO:0005524 ... Q84TH5 37666961
    45514 8i5j:A (1.602) BS01 MG ? GO:0015833 ... A0A085SLP2 37996461
    45515 8i5j:B (1.602) BS01 MG ? GO:0015833 ... A0A085SLP2 37996461
    45516 8i5k:A (1.219) BS01 MG ? GO:0015833 ... A0A085SLP2 37996461
    45517 8i6m:A (2.59) BS02 MG ? N/A Q00IB3 N/A
    45518 8i6m:B (2.59) BS02 MG ? N/A Q00IB3 N/A
    45519 8i6m:C (2.59) BS02 MG ? N/A Q00IB3 N/A
    45520 8i6m:D (2.59) BS02 MG ? N/A Q00IB3 N/A
    45521 8i6m:E (2.59) BS02 MG ? N/A Q00IB3 N/A
    45522 8i6m:F (2.59) BS02 MG ? N/A Q00IB3 N/A
    45523 8i6r:B (4.0) BS02 MG ? GO:0005524 ... Q9I6C0 37186861
    45524 8i6s:B (4.4) BS02 MG ? GO:0005524 ... Q9I6C0 37186861
    45525 8i87:B (3.1) BS03 MG ? GO:0003676 ... A0A316E3U6 37311833
    45526 8ia9:A (2.5) BS01 MG ? GO:0003824 ... Q9ALN2 37703985
    45527 8ia9:B (2.5) BS01 MG ? GO:0003824 ... Q9ALN2 37703985
    45528 8iaa:A (2.1) BS02 MG ? GO:0003824 ... Q9ALN2 37703985
    45529 8iaa:B (2.1) BS02 MG ? GO:0003824 ... Q9ALN2 37703985
    45530 8iag:A (1.5) BS02 MG N/A GO:0004601 ... N/A N/A
    45531 8iag:B (1.5) BS02 MG N/A GO:0004601 ... N/A N/A
    45532 8iat:A (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45533 8iat:B (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45534 8iat:C (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45535 8iat:D (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45536 8iau:A (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45537 8iau:B (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45538 8iau:C (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45539 8iau:D (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45540 8iau:F (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45541 8iau:G (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45542 8iau:H (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45543 8iaw:A (2.89) BS01 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45544 8iaw:B (2.89) BS01 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45545 8iax:A (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45546 8iax:B (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45547 8iax:C (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45548 8iax:D (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45549 8iax:E (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45550 8iax:F (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45551 8iax:G (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45552 8iax:H (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    45553 8ic6:A (1.75) BS01 MG N/A GO:0004553 ... N/A 37726269
    45554 8ic6:A (1.75) BS02 MG N/A GO:0004553 ... N/A 37726269
    45555 8ic6:B (1.75) BS01 MG N/A GO:0004553 ... N/A 37726269
    45556 8ic6:B (1.75) BS02 MG N/A GO:0004553 ... N/A 37726269
    45557 8ic6:B (1.75) BS03 MG N/A GO:0004553 ... N/A 37726269
    45558 8ic7:A (1.35) BS01 MG N/A GO:0004553 ... N/A 37726269
    45559 8ic7:A (1.35) BS02 MG N/A GO:0004553 ... N/A 37726269
    45560 8ic7:B (1.35) BS01 MG N/A GO:0004553 ... N/A 37726269
    45561 8ic7:B (1.35) BS02 MG N/A GO:0004553 ... N/A 37726269
    45562 8ic7:B (1.35) BS03 MG N/A GO:0004553 ... N/A 37726269
    45563 8iem:P (3.35) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    45564 8ien:P (3.25) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    45565 8ieo:P (3.78) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    45566 8ies:P (3.73) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    45567 8ifb:C (2.43) BS02 MG ? GO:0000028 ... P0A7V3 38227611
    45568 8ifb:M (2.43) BS02 MG ? GO:0000049 ... P0A7S9 38227611
    45569 8ifb:c (2.43) BS02 MG ? GO:0000027 ... P60422 38227611
    45570 8ifb:c (2.43) BS03 MG ? GO:0000027 ... P60422 38227611
    45571 8ifb:d (2.43) BS02 MG ? GO:0000027 ... P60438 38227611
    45572 8ifb:d (2.43) BS03 MG ? GO:0000027 ... P60438 38227611
    45573 8ifb:d (2.43) BS04 MG ? GO:0000027 ... P60438 38227611
    45574 8ifb:d (2.43) BS05 MG ? GO:0000027 ... P60438 38227611
    45575 8ifb:l (2.43) BS04 MG ? GO:0000027 ... P0ADY7 38227611
    45576 8ifb:z (2.43) BS02 MG ? GO:0000027 ... P0A7N4 38227611
    45577 8ifc:4 (2.9) BS03 MG ? GO:0002181 ... P0A7M9 38227611
    45578 8ifc:M (2.9) BS03 MG ? GO:0000049 ... P0A7S9 38227611
    45579 8ifc:S (2.9) BS02 MG ? GO:0000028 ... P0A7U3 38227611
    45580 8ifc:c (2.9) BS02 MG ? GO:0000027 ... P60422 38227611
    45581 8ifc:d (2.9) BS02 MG ? GO:0000027 ... P60438 38227611
    45582 8ifc:d (2.9) BS03 MG ? GO:0000027 ... P60438 38227611
    45583 8ifd:1D (2.59) BS02 MG ? GO:0002181 ... P62917 38227611
    45584 8ifd:1E (2.59) BS02 MG ? GO:0002181 ... P39023 38227611
    45585 8ifd:2P (2.59) BS02 MG ? GO:0000122 ... P62829 38227611
    45586 8ifd:2V (2.59) BS02 MG ? GO:0002181 ... P47914 38227611
    45587 8ifd:2Y (2.59) BS02 MG ? GO:0002181 ... P62910 38227611
    45588 8ifd:2Y (2.59) BS03 MG ? GO:0002181 ... P62910 38227611
    45589 8ifd:2Z (2.59) BS02 MG ? GO:0000049 ... P18077 38227611
    45590 8ifd:2a (2.59) BS02 MG ? GO:0002181 ... P49207 38227611
    45591 8ifd:2d (2.59) BS03 MG ? GO:0002181 ... P61927 38227611
    45592 8ife:1D (2.57) BS02 MG ? GO:0002181 ... P62917 38227611
    45593 8ife:1E (2.57) BS02 MG ? GO:0002181 ... P39023 38227611
    45594 8ife:2M (2.57) BS03 MG ? GO:0002181 ... Q02543 38227611
    45595 8ife:2P (2.57) BS02 MG ? GO:0000122 ... P62829 38227611
    45596 8ife:2Y (2.57) BS03 MG ? GO:0002181 ... P62910 38227611
    45597 8ife:2Y (2.57) BS04 MG ? GO:0002181 ... P62910 38227611
    45598 8ife:2Z (2.57) BS02 MG ? GO:0000049 ... P18077 38227611
    45599 8ife:2a (2.57) BS02 MG ? GO:0002181 ... P49207 38227611
    45600 8ife:3L (2.57) BS02 MG ? GO:0000028 ... P62263 38227611
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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