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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44801 8g2c:2q (2.65) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    44802 8g2d:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38238495
    44803 8g2d:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38238495
    44804 8g2d:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38238495
    44805 8g2d:11 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    44806 8g2d:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    44807 8g2d:12 (2.7) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    44808 8g2d:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    44809 8g2d:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    44810 8g2d:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    44811 8g2d:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38238495
    44812 8g2d:16 (2.7) BS03 MG ? GO:0000049 ... P35871 38238495
    44813 8g2d:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38238495
    44814 8g2d:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38238495
    44815 8g2d:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    44816 8g2d:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    44817 8g2d:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    44818 8g2d:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    44819 8g2d:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    44820 8g2d:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38238495
    44821 8g2d:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38238495
    44822 8g2d:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38238495
    44823 8g2d:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38238495
    44824 8g2d:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38238495
    44825 8g2d:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38238495
    44826 8g2d:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    44827 8g2d:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    44828 8g2d:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    44829 8g2d:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    44830 8g2d:1E (2.7) BS06 MG ? GO:0003735 ... Q5SHN8 38238495
    44831 8g2d:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    44832 8g2d:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    44833 8g2d:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    44834 8g2d:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    44835 8g2d:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    44836 8g2d:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    44837 8g2d:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    44838 8g2d:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    44839 8g2d:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    44840 8g2d:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 38238495
    44841 8g2d:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 38238495
    44842 8g2d:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38238495
    44843 8g2d:1N (2.7) BS03 MG ? GO:0003729 ... P60488 38238495
    44844 8g2d:1N (2.7) BS04 MG ? GO:0003729 ... P60488 38238495
    44845 8g2d:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    44846 8g2d:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38238495
    44847 8g2d:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    44848 8g2d:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    44849 8g2d:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    44850 8g2d:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    44851 8g2d:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38238495
    44852 8g2d:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38238495
    44853 8g2d:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38238495
    44854 8g2d:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38238495
    44855 8g2d:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38238495
    44856 8g2d:1Q (2.7) BS08 MG ? GO:0000049 ... P60489 38238495
    44857 8g2d:1Q (2.7) BS09 MG ? GO:0000049 ... P60489 38238495
    44858 8g2d:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    44859 8g2d:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    44860 8g2d:1R (2.7) BS04 MG ? GO:0003735 ... Q9Z9H5 38238495
    44861 8g2d:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    44862 8g2d:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    44863 8g2d:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    44864 8g2d:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38238495
    44865 8g2d:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38238495
    44866 8g2d:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38238495
    44867 8g2d:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38238495
    44868 8g2d:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38238495
    44869 8g2d:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38238495
    44870 8g2d:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    44871 8g2d:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    44872 8g2d:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    44873 8g2d:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38238495
    44874 8g2d:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    44875 8g2d:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    44876 8g2d:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    44877 8g2d:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    44878 8g2d:1W (2.7) BS06 MG ? GO:0003735 ... Q5SHP3 38238495
    44879 8g2d:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    44880 8g2d:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38238495
    44881 8g2d:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38238495
    44882 8g2d:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38238495
    44883 8g2d:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38238495
    44884 8g2d:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    44885 8g2d:1Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 38238495
    44886 8g2d:1b (2.7) BS02 MG ? GO:0003735 ... P80371 38238495
    44887 8g2d:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    44888 8g2d:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    44889 8g2d:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    44890 8g2d:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38238495
    44891 8g2d:1n (2.7) BS02 MG ? GO:0003735 ... P0DOY6 38238495
    44892 8g2d:21 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    44893 8g2d:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    44894 8g2d:23 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    44895 8g2d:25 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    44896 8g2d:26 (2.7) BS02 MG ? GO:0000049 ... P35871 38238495
    44897 8g2d:29 (2.7) BS02 MG ? GO:0003735 ... Q5SHR2 38238495
    44898 8g2d:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    44899 8g2d:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    44900 8g2d:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    44901 8g2d:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    44902 8g2d:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    44903 8g2d:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    44904 8g2d:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    44905 8g2d:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    44906 8g2d:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38238495
    44907 8g2d:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38238495
    44908 8g2d:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    44909 8g2d:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    44910 8g2d:2V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    44911 8g2d:2V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    44912 8g2d:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    44913 8g2d:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    44914 8g2d:2Z (2.7) BS02 MG ? GO:0003723 ... Q5SHZ1 38238495
    44915 8g2d:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38238495
    44916 8g2d:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    44917 8g2d:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    44918 8g2d:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    44919 8g2d:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    44920 8g2d:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    44921 8g2d:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    44922 8g2d:2r (2.7) BS02 MG ? GO:0003735 ... Q5SLQ0 38238495
    44923 8g2d:2t (2.7) BS02 MG ? GO:0003723 ... P80380 38238495
    44924 8g2e:A (1.838) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 37242488
    44925 8g2p:A (2.521) BS06 MG N/A N/A Q8C6L5 N/A
    44926 8g2p:C (2.521) BS06 MG N/A N/A Q8C6L5 N/A
    44927 8g2q:A (2.37) BS07 MG N/A N/A Q8C6L5 N/A
    44928 8g2q:C (2.37) BS06 MG N/A N/A Q8C6L5 N/A
    44929 8g2w:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    44930 8g2z:AG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44931 8g2z:BB (4.1) BS02 MG ? GO:0000226 ... P41352 37061538
    44932 8g2z:BC (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44933 8g2z:BE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44934 8g2z:CE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44935 8g2z:CG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44936 8g2z:CI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44937 8g2z:DA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44938 8g2z:DE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44939 8g2z:DI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44940 8g2z:DM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44941 8g2z:EK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44942 8g2z:IA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44943 8g2z:IE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44944 8g2z:IG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44945 8g2z:IM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44946 8g2z:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44947 8g2z:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44948 8g2z:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44949 8g2z:JK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44950 8g2z:KE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44951 8g2z:NM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44952 8g2z:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44953 8g2z:OC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44954 8g2z:OE (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44955 8g2z:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44956 8g2z:PC (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44957 8g2z:PE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44958 8g2z:PI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44959 8g2z:QE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44960 8g2z:QK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44961 8g2z:QM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44962 8g2z:SK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44963 8g2z:TK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44964 8g2z:UE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44965 8g2z:UI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44966 8g2z:UK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44967 8g2z:UM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44968 8g2z:VA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44969 8g2z:VE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44970 8g2z:VG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44971 8g2z:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44972 8g2z:WA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44973 8g2z:WE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44974 8g2z:WI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44975 8g2z:WK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44976 8g3d:CC (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44977 8g3d:CE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44978 8g3d:CI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44979 8g3d:DE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44980 8g3d:DI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44981 8g3d:HI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44982 8g3d:JC (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44983 8g3d:JE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44984 8g3d:JG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44985 8g3d:JK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44986 8g3d:JM (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44987 8g3d:KG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44988 8g3d:KI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44989 8g3d:LK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44990 8g3d:NK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44991 8g3d:PE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44992 8g3d:PG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44993 8g3d:PI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44994 8g3d:PK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44995 8g3d:QI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44996 8g3d:QK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44997 8g3d:VK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44998 8g3d:VM (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    44999 8g3d:WG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    45000 8g3d:WK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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