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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44401 8g29:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    44402 8g29:1e (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    44403 8g29:1f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    44404 8g29:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38238495
    44405 8g29:1m (2.55) BS03 MG ? GO:0000049 ... P80377 38238495
    44406 8g29:1n (2.55) BS02 MG ? GO:0003735 ... P0DOY6 38238495
    44407 8g29:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38238495
    44408 8g29:20 (2.55) BS04 MG ? GO:0003735 ... P60493 38238495
    44409 8g29:21 (2.55) BS02 MG ? GO:0003735 ... P60494 38238495
    44410 8g29:23 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    44411 8g29:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38238495
    44412 8g29:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38238495
    44413 8g29:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38238495
    44414 8g29:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38238495
    44415 8g29:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38238495
    44416 8g29:2E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    44417 8g29:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    44418 8g29:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    44419 8g29:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    44420 8g29:2F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    44421 8g29:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    44422 8g29:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38238495
    44423 8g29:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38238495
    44424 8g29:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38238495
    44425 8g29:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    44426 8g29:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    44427 8g29:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    44428 8g2a:10 (2.45) BS04 MG ? GO:0003735 ... P60493 38238495
    44429 8g2a:10 (2.45) BS05 MG ? GO:0003735 ... P60493 38238495
    44430 8g2a:10 (2.45) BS06 MG ? GO:0003735 ... P60493 38238495
    44431 8g2a:11 (2.45) BS03 MG ? GO:0003735 ... P60494 38238495
    44432 8g2a:11 (2.45) BS04 MG ? GO:0003735 ... P60494 38238495
    44433 8g2a:12 (2.45) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    44434 8g2a:13 (2.45) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    44435 8g2a:13 (2.45) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    44436 8g2a:13 (2.45) BS05 MG ? GO:0003735 ... Q5SHQ6 38238495
    44437 8g2a:15 (2.45) BS02 MG ? GO:0003735 ... P80339 38238495
    44438 8g2a:15 (2.45) BS03 MG ? GO:0003735 ... P80339 38238495
    44439 8g2a:15 (2.45) BS04 MG ? GO:0003735 ... P80339 38238495
    44440 8g2a:16 (2.45) BS02 MG ? GO:0000049 ... P35871 38238495
    44441 8g2a:16 (2.45) BS03 MG ? GO:0000049 ... P35871 38238495
    44442 8g2a:16 (2.45) BS04 MG ? GO:0000049 ... P35871 38238495
    44443 8g2a:17 (2.45) BS02 MG ? GO:0003735 ... P80340 38238495
    44444 8g2a:17 (2.45) BS03 MG ? GO:0003735 ... P80340 38238495
    44445 8g2a:17 (2.45) BS04 MG ? GO:0003735 ... P80340 38238495
    44446 8g2a:17 (2.45) BS05 MG ? GO:0003735 ... P80340 38238495
    44447 8g2a:18 (2.45) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    44448 8g2a:18 (2.45) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    44449 8g2a:18 (2.45) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    44450 8g2a:1D (2.45) BS03 MG ? GO:0002181 ... P60405 38238495
    44451 8g2a:1D (2.45) BS04 MG ? GO:0002181 ... P60405 38238495
    44452 8g2a:1D (2.45) BS05 MG ? GO:0002181 ... P60405 38238495
    44453 8g2a:1D (2.45) BS06 MG ? GO:0002181 ... P60405 38238495
    44454 8g2a:1D (2.45) BS07 MG ? GO:0002181 ... P60405 38238495
    44455 8g2a:1D (2.45) BS08 MG ? GO:0002181 ... P60405 38238495
    44456 8g2a:1D (2.45) BS09 MG ? GO:0002181 ... P60405 38238495
    44457 8g2a:1D (2.45) BS10 MG ? GO:0002181 ... P60405 38238495
    44458 8g2a:1D (2.45) BS11 MG ? GO:0002181 ... P60405 38238495
    44459 8g2a:1D (2.45) BS12 MG ? GO:0002181 ... P60405 38238495
    44460 8g2a:1E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    44461 8g2a:1E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    44462 8g2a:1E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    44463 8g2a:1E (2.45) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    44464 8g2a:1E (2.45) BS06 MG ? GO:0003735 ... Q5SHN8 38238495
    44465 8g2a:1E (2.45) BS07 MG ? GO:0003735 ... Q5SHN8 38238495
    44466 8g2a:1F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    44467 8g2a:1F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    44468 8g2a:1F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    44469 8g2a:1F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    44470 8g2a:1F (2.45) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    44471 8g2a:1F (2.45) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    44472 8g2a:1F (2.45) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    44473 8g2a:1F (2.45) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    44474 8g2a:1F (2.45) BS10 MG ? GO:0003735 ... Q5SHN9 38238495
    44475 8g2a:1F (2.45) BS11 MG ? GO:0003735 ... Q5SHN9 38238495
    44476 8g2a:1F (2.45) BS12 MG ? GO:0003735 ... Q5SHN9 38238495
    44477 8g2a:1F (2.45) BS13 MG ? GO:0003735 ... Q5SHN9 38238495
    44478 8g2a:1G (2.45) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    44479 8g2a:1I (2.45) BS02 MG ? GO:0003735 ... Q5SLQ1 38238495
    44480 8g2a:1N (2.45) BS02 MG ? GO:0003729 ... P60488 38238495
    44481 8g2a:1N (2.45) BS03 MG ? GO:0003729 ... P60488 38238495
    44482 8g2a:1O (2.45) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    44483 8g2a:1O (2.45) BS04 MG ? GO:0003735 ... Q5SHP8 38238495
    44484 8g2a:1P (2.45) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    44485 8g2a:1P (2.45) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    44486 8g2a:1P (2.45) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    44487 8g2a:1P (2.45) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    44488 8g2a:1Q (2.45) BS05 MG ? GO:0000049 ... P60489 38238495
    44489 8g2a:1Q (2.45) BS06 MG ? GO:0000049 ... P60489 38238495
    44490 8g2a:1Q (2.45) BS07 MG ? GO:0000049 ... P60489 38238495
    44491 8g2a:1Q (2.45) BS08 MG ? GO:0000049 ... P60489 38238495
    44492 8g2a:1Q (2.45) BS09 MG ? GO:0000049 ... P60489 38238495
    44493 8g2a:1R (2.45) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    44494 8g2a:1R (2.45) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    44495 8g2a:1R (2.45) BS04 MG ? GO:0003735 ... Q9Z9H5 38238495
    44496 8g2a:1S (2.45) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    44497 8g2a:1S (2.45) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    44498 8g2a:1U (2.45) BS02 MG ? GO:0000027 ... P60491 38238495
    44499 8g2a:1U (2.45) BS03 MG ? GO:0000027 ... P60491 38238495
    44500 8g2a:1U (2.45) BS04 MG ? GO:0000027 ... P60491 38238495
    44501 8g2a:1U (2.45) BS05 MG ? GO:0000027 ... P60491 38238495
    44502 8g2a:1U (2.45) BS06 MG ? GO:0000027 ... P60491 38238495
    44503 8g2a:1U (2.45) BS07 MG ? GO:0000027 ... P60491 38238495
    44504 8g2a:1U (2.45) BS08 MG ? GO:0000027 ... P60491 38238495
    44505 8g2a:1U (2.45) BS09 MG ? GO:0000027 ... P60491 38238495
    44506 8g2a:1U (2.45) BS10 MG ? GO:0000027 ... P60491 38238495
    44507 8g2a:1U (2.45) BS11 MG ? GO:0000027 ... P60491 38238495
    44508 8g2a:1V (2.45) BS02 MG ? GO:0003723 ... P60492 38238495
    44509 8g2a:1V (2.45) BS03 MG ? GO:0003723 ... P60492 38238495
    44510 8g2a:1V (2.45) BS04 MG ? GO:0003723 ... P60492 38238495
    44511 8g2a:1V (2.45) BS05 MG ? GO:0003723 ... P60492 38238495
    44512 8g2a:1V (2.45) BS06 MG ? GO:0003723 ... P60492 38238495
    44513 8g2a:1W (2.45) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    44514 8g2a:1W (2.45) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    44515 8g2a:1W (2.45) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    44516 8g2a:1W (2.45) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    44517 8g2a:1X (2.45) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    44518 8g2a:1X (2.45) BS03 MG ? GO:0000027 ... Q5SHP0 38238495
    44519 8g2a:1X (2.45) BS04 MG ? GO:0000027 ... Q5SHP0 38238495
    44520 8g2a:1X (2.45) BS05 MG ? GO:0000027 ... Q5SHP0 38238495
    44521 8g2a:1Y (2.45) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    44522 8g2a:1e (2.45) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    44523 8g2a:1e (2.45) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    44524 8g2a:1k (2.45) BS02 MG ? GO:0003735 ... P80376 38238495
    44525 8g2a:1k (2.45) BS03 MG ? GO:0003735 ... P80376 38238495
    44526 8g2a:1l (2.45) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    44527 8g2a:1m (2.45) BS04 MG ? GO:0000049 ... P80377 38238495
    44528 8g2a:21 (2.45) BS03 MG ? GO:0003735 ... P60494 38238495
    44529 8g2a:23 (2.45) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    44530 8g2a:25 (2.45) BS02 MG ? GO:0003735 ... P80339 38238495
    44531 8g2a:26 (2.45) BS02 MG ? GO:0000049 ... P35871 38238495
    44532 8g2a:27 (2.45) BS02 MG ? GO:0003735 ... P80340 38238495
    44533 8g2a:2D (2.45) BS03 MG ? GO:0002181 ... P60405 38238495
    44534 8g2a:2D (2.45) BS04 MG ? GO:0002181 ... P60405 38238495
    44535 8g2a:2D (2.45) BS05 MG ? GO:0002181 ... P60405 38238495
    44536 8g2a:2D (2.45) BS06 MG ? GO:0002181 ... P60405 38238495
    44537 8g2a:2D (2.45) BS07 MG ? GO:0002181 ... P60405 38238495
    44538 8g2a:2D (2.45) BS08 MG ? GO:0002181 ... P60405 38238495
    44539 8g2a:2E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    44540 8g2a:2F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    44541 8g2a:2F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    44542 8g2a:2F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    44543 8g2a:2F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    44544 8g2a:2G (2.45) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    44545 8g2a:2Q (2.45) BS05 MG ? GO:0000049 ... P60489 38238495
    44546 8g2a:2Q (2.45) BS06 MG ? GO:0000049 ... P60489 38238495
    44547 8g2a:2U (2.45) BS02 MG ? GO:0000027 ... P60491 38238495
    44548 8g2a:2V (2.45) BS02 MG ? GO:0003723 ... P60492 38238495
    44549 8g2a:2W (2.45) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    44550 8g2a:2W (2.45) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    44551 8g2a:2X (2.45) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    44552 8g2a:2d (2.45) BS02 MG ? GO:0003723 ... P80373 38238495
    44553 8g2a:2e (2.45) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    44554 8g2a:2f (2.45) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    44555 8g2a:2k (2.45) BS02 MG ? GO:0003735 ... P80376 38238495
    44556 8g2a:2l (2.45) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    44557 8g2a:2l (2.45) BS03 MG ? GO:0000049 ... Q5SHN3 38238495
    44558 8g2a:2n (2.45) BS02 MG ? GO:0003735 ... P0DOY6 38238495
    44559 8g2a:2q (2.45) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    44560 8g2a:2t (2.45) BS02 MG ? GO:0003723 ... P80380 38238495
    44561 8g2b:10 (2.55) BS03 MG ? GO:0003735 ... P60493 38238495
    44562 8g2b:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38238495
    44563 8g2b:10 (2.55) BS05 MG ? GO:0003735 ... P60493 38238495
    44564 8g2b:11 (2.55) BS02 MG ? GO:0003735 ... P60494 38238495
    44565 8g2b:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    44566 8g2b:12 (2.55) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    44567 8g2b:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    44568 8g2b:13 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    44569 8g2b:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38238495
    44570 8g2b:15 (2.55) BS03 MG ? GO:0003735 ... P80339 38238495
    44571 8g2b:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38238495
    44572 8g2b:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38238495
    44573 8g2b:17 (2.55) BS04 MG ? GO:0003735 ... P80340 38238495
    44574 8g2b:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    44575 8g2b:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    44576 8g2b:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    44577 8g2b:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38238495
    44578 8g2b:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38238495
    44579 8g2b:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38238495
    44580 8g2b:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38238495
    44581 8g2b:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38238495
    44582 8g2b:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38238495
    44583 8g2b:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38238495
    44584 8g2b:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38238495
    44585 8g2b:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38238495
    44586 8g2b:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    44587 8g2b:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    44588 8g2b:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    44589 8g2b:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    44590 8g2b:1E (2.55) BS06 MG ? GO:0003735 ... Q5SHN8 38238495
    44591 8g2b:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    44592 8g2b:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    44593 8g2b:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    44594 8g2b:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    44595 8g2b:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    44596 8g2b:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    44597 8g2b:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    44598 8g2b:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    44599 8g2b:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38238495
    44600 8g2b:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38238495
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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