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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44001 8fc6:1R (2.35) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    44002 8fc6:1U (2.35) BS02 MG ? GO:0000027 ... P60491 37452045
    44003 8fc6:1U (2.35) BS03 MG ? GO:0000027 ... P60491 37452045
    44004 8fc6:1U (2.35) BS04 MG ? GO:0000027 ... P60491 37452045
    44005 8fc6:1U (2.35) BS05 MG ? GO:0000027 ... P60491 37452045
    44006 8fc6:1U (2.35) BS06 MG ? GO:0000027 ... P60491 37452045
    44007 8fc6:1U (2.35) BS07 MG ? GO:0000027 ... P60491 37452045
    44008 8fc6:1V (2.35) BS02 MG ? GO:0003723 ... P60492 37452045
    44009 8fc6:1V (2.35) BS03 MG ? GO:0003723 ... P60492 37452045
    44010 8fc6:1V (2.35) BS04 MG ? GO:0003723 ... P60492 37452045
    44011 8fc6:1W (2.35) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    44012 8fc6:1W (2.35) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    44013 8fc6:1b (2.35) BS02 MG ? GO:0003735 ... P80371 37452045
    44014 8fc6:1e (2.35) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    44015 8fc6:1k (2.35) BS02 MG ? GO:0003735 ... P80376 37452045
    44016 8fc6:1l (2.35) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    44017 8fc6:1m (2.35) BS02 MG ? GO:0000049 ... P80377 37452045
    44018 8fc6:1t (2.35) BS02 MG ? GO:0003723 ... P80380 37452045
    44019 8fc6:1y (2.35) BS02 MG ? GO:0005515 ... P0AD49 37452045
    44020 8fc6:1y (2.35) BS03 MG ? GO:0005515 ... P0AD49 37452045
    44021 8fc6:25 (2.35) BS02 MG ? GO:0003735 ... P80339 37452045
    44022 8fc6:25 (2.35) BS03 MG ? GO:0003735 ... P80339 37452045
    44023 8fc6:27 (2.35) BS02 MG ? GO:0003735 ... P80340 37452045
    44024 8fc6:27 (2.35) BS03 MG ? GO:0003735 ... P80340 37452045
    44025 8fc6:2D (2.35) BS03 MG ? GO:0002181 ... P60405 37452045
    44026 8fc6:2D (2.35) BS04 MG ? GO:0002181 ... P60405 37452045
    44027 8fc6:2D (2.35) BS05 MG ? GO:0002181 ... P60405 37452045
    44028 8fc6:2D (2.35) BS06 MG ? GO:0002181 ... P60405 37452045
    44029 8fc6:2D (2.35) BS07 MG ? GO:0002181 ... P60405 37452045
    44030 8fc6:2D (2.35) BS08 MG ? GO:0002181 ... P60405 37452045
    44031 8fc6:2D (2.35) BS09 MG ? GO:0002181 ... P60405 37452045
    44032 8fc6:2E (2.35) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    44033 8fc6:2E (2.35) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    44034 8fc6:2F (2.35) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    44035 8fc6:2F (2.35) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    44036 8fc6:2F (2.35) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    44037 8fc6:2F (2.35) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    44038 8fc6:2G (2.35) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    44039 8fc6:2Q (2.35) BS03 MG ? GO:0000049 ... P60489 37452045
    44040 8fc6:2Q (2.35) BS04 MG ? GO:0000049 ... P60489 37452045
    44041 8fc6:2R (2.35) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    44042 8fc6:2U (2.35) BS02 MG ? GO:0000027 ... P60491 37452045
    44043 8fc6:2V (2.35) BS02 MG ? GO:0003723 ... P60492 37452045
    44044 8fc6:2V (2.35) BS03 MG ? GO:0003723 ... P60492 37452045
    44045 8fc6:2W (2.35) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    44046 8fc6:2W (2.35) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    44047 8fc6:2f (2.35) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    44048 8fc6:2k (2.35) BS02 MG ? GO:0003735 ... P80376 37452045
    44049 8fc6:2l (2.35) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    44050 8fc6:2t (2.35) BS02 MG ? GO:0003723 ... P80380 37452045
    44051 8fc7:E (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44052 8fc7:F (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44053 8fc7:G (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44054 8fc7:H (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44055 8fc9:E (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44056 8fc9:F (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44057 8fc9:G (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44058 8fc9:H (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    44059 8fdb:A (3.06) BS03 MG 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    44060 8fdb:A (3.06) BS04 MG 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    44061 8ffi:F (2.7) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    44062 8ffi:L (2.7) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    44063 8ffi:N (2.7) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    44064 8fft:A (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    44065 8fft:A (2.1) BS02 MG N/A GO:0009058 ... N/A 37497377
    44066 8fft:B (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    44067 8fft:C (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    44068 8fft:D (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    44069 8ffu:A (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    44070 8ffu:B (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    44071 8ffu:C (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    44072 8ffu:D (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    44073 8ffw:A (3.23) BS02 MG 3.6.4.10 GO:0001764 ... P07900 37945740
    44074 8ffw:B (3.23) BS02 MG 3.6.4.10 GO:0001764 ... P07900 37945740
    44075 8fg3:A (1.49) BS02 MG 3.6.5.2 GO:0003924 ... P01112 37615343
    44076 8fg4:A (1.85) BS03 MG 3.6.5.2 GO:0003924 ... P01112 37615343
    44077 8fix:D (3.9) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    44078 8fiy:D (7.3) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    44079 8fkp:L9 (2.85) BS03 MG ? GO:0002181 ... P61313 37410842
    44080 8fkp:LQ (2.85) BS02 MG ? GO:0002181 ... P62910 37410842
    44081 8fkp:LT (2.85) BS02 MG ? GO:0000049 ... P18077 37410842
    44082 8fkq:L9 (2.76) BS03 MG ? GO:0002181 ... P61313 37410842
    44083 8fkq:LQ (2.76) BS02 MG ? GO:0002181 ... P62910 37410842
    44084 8fkq:LT (2.76) BS02 MG ? GO:0000049 ... P18077 37410842
    44085 8fkr:L9 (2.89) BS03 MG ? GO:0002181 ... P61313 37410842
    44086 8fkr:LT (2.89) BS02 MG ? GO:0000049 ... P18077 37410842
    44087 8fks:L9 (2.88) BS03 MG ? GO:0002181 ... P61313 37410842
    44088 8fks:LQ (2.88) BS02 MG ? GO:0002181 ... P62910 37410842
    44089 8fks:LT (2.88) BS02 MG ? GO:0000049 ... P18077 37410842
    44090 8fkt:LQ (2.81) BS02 MG ? GO:0002181 ... P62910 37410842
    44091 8fkt:LT (2.81) BS02 MG ? GO:0000049 ... P18077 37410842
    44092 8fku:L9 (2.82) BS03 MG ? GO:0002181 ... P61313 37410842
    44093 8fku:LQ (2.82) BS02 MG ? GO:0002181 ... P62910 37410842
    44094 8fku:LT (2.82) BS02 MG ? GO:0000049 ... P18077 37410842
    44095 8fku:SR (2.82) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    44096 8fkv:L9 (2.47) BS03 MG ? GO:0002181 ... P61313 37410842
    44097 8fkv:LT (2.47) BS02 MG ? GO:0000049 ... P18077 37410842
    44098 8fkv:SR (2.47) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    44099 8fkv:SU (2.47) BS02 MG ? GO:0003682 ... Q8WTT2 37410842
    44100 8fkw:L9 (2.5) BS03 MG ? GO:0002181 ... P61313 37410842
    44101 8fkw:LQ (2.5) BS02 MG ? GO:0002181 ... P62910 37410842
    44102 8fkw:LT (2.5) BS02 MG ? GO:0000049 ... P18077 37410842
    44103 8fkw:SR (2.5) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    44104 8fkw:SU (2.5) BS02 MG ? GO:0003682 ... Q8WTT2 37410842
    44105 8fkx:L9 (2.59) BS03 MG ? GO:0002181 ... P61313 37410842
    44106 8fkx:LB (2.59) BS02 MG ? GO:0002181 ... Q07020 37410842
    44107 8fkx:LQ (2.59) BS02 MG ? GO:0002181 ... P62910 37410842
    44108 8fkx:LT (2.59) BS02 MG ? GO:0000049 ... P18077 37410842
    44109 8fkx:SA (2.59) BS03 MG ? GO:0002181 ... P36578 37410842
    44110 8fkx:SU (2.59) BS01 MG ? GO:0003682 ... Q8WTT2 37410842
    44111 8fky:L9 (2.67) BS03 MG ? GO:0002181 ... P61313 37410842
    44112 8fky:LQ (2.67) BS02 MG ? GO:0002181 ... P62910 37410842
    44113 8fky:LT (2.67) BS02 MG ? GO:0000049 ... P18077 37410842
    44114 8fky:SU (2.67) BS01 MG ? GO:0003682 ... Q8WTT2 37410842
    44115 8fkz:L9 (3.04) BS03 MG ? GO:0002181 ... P61313 37410842
    44116 8fkz:LT (3.04) BS02 MG ? GO:0000049 ... P18077 37410842
    44117 8fkz:SA (3.04) BS03 MG ? GO:0002181 ... P36578 37410842
    44118 8fkz:SR (3.04) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    44119 8fl0:LT (2.91) BS02 MG ? GO:0000049 ... P18077 37410842
    44120 8fl0:NC (2.91) BS03 MG ? GO:0003723 ... Q13823 37410842
    44121 8fl0:SR (2.91) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    44122 8fl2:L6 (2.67) BS03 MG ? GO:0001824 ... P26373 37410842
    44123 8fl2:L9 (2.67) BS03 MG ? GO:0002181 ... P61313 37410842
    44124 8fl2:LQ (2.67) BS02 MG ? GO:0002181 ... P62910 37410842
    44125 8fl2:LR (2.67) BS02 MG ? GO:0002181 ... P49207 37410842
    44126 8fl2:LT (2.67) BS02 MG ? GO:0000049 ... P18077 37410842
    44127 8fl2:NC (2.67) BS03 MG ? GO:0003723 ... Q13823 37410842
    44128 8fl2:SF (2.67) BS02 MG ? GO:0002181 ... P62917 37410842
    44129 8fl3:L6 (2.53) BS03 MG ? GO:0001824 ... P26373 37410842
    44130 8fl3:L9 (2.53) BS03 MG ? GO:0002181 ... P61313 37410842
    44131 8fl3:LQ (2.53) BS02 MG ? GO:0002181 ... P62910 37410842
    44132 8fl3:LR (2.53) BS02 MG ? GO:0002181 ... P49207 37410842
    44133 8fl3:LT (2.53) BS02 MG ? GO:0000049 ... P18077 37410842
    44134 8fl3:NC (2.53) BS03 MG ? GO:0003723 ... Q13823 37410842
    44135 8fl3:SF (2.53) BS02 MG ? GO:0002181 ... P62917 37410842
    44136 8fl3:SR (2.53) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    44137 8fl4:L6 (2.89) BS03 MG ? GO:0001824 ... P26373 37410842
    44138 8fl4:LQ (2.89) BS02 MG ? GO:0002181 ... P62910 37410842
    44139 8fl4:LT (2.89) BS02 MG ? GO:0000049 ... P18077 37410842
    44140 8fl4:NC (2.89) BS03 MG ? GO:0003723 ... Q13823 37410842
    44141 8fl4:SF (2.89) BS02 MG ? GO:0002181 ... P62917 37410842
    44142 8fl6:LQ (2.62) BS02 MG ? GO:0002181 ... P62910 37410842
    44143 8fl6:LT (2.62) BS02 MG ? GO:0000049 ... P18077 37410842
    44144 8fl6:SF (2.62) BS02 MG ? GO:0002181 ... P62917 37410842
    44145 8fl7:LQ (2.55) BS02 MG ? GO:0002181 ... P62910 37410842
    44146 8fl7:LR (2.55) BS02 MG ? GO:0002181 ... P49207 37410842
    44147 8fl7:LT (2.55) BS02 MG ? GO:0000049 ... P18077 37410842
    44148 8fl7:SF (2.55) BS02 MG ? GO:0002181 ... P62917 37410842
    44149 8fl7:SR (2.55) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    44150 8fl9:LT (2.75) BS02 MG ? GO:0000049 ... P18077 37410842
    44151 8fl9:SF (2.75) BS02 MG ? GO:0002181 ... P62917 37410842
    44152 8fl9:SR (2.75) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    44153 8fla:LQ (2.63) BS02 MG ? GO:0002181 ... P62910 37410842
    44154 8fla:LT (2.63) BS02 MG ? GO:0000049 ... P18077 37410842
    44155 8fla:SF (2.63) BS02 MG ? GO:0002181 ... P62917 37410842
    44156 8fla:SR (2.63) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    44157 8flb:LQ (2.55) BS02 MG ? GO:0002181 ... P62910 37410842
    44158 8flb:LT (2.55) BS02 MG ? GO:0000049 ... P18077 37410842
    44159 8flb:SF (2.55) BS02 MG ? GO:0002181 ... P62917 37410842
    44160 8flb:SR (2.55) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    44161 8flc:LQ (2.76) BS02 MG ? GO:0002181 ... P62910 37410842
    44162 8flc:LR (2.76) BS02 MG ? GO:0002181 ... P49207 37410842
    44163 8flc:LT (2.76) BS02 MG ? GO:0000049 ... P18077 37410842
    44164 8flc:SF (2.76) BS02 MG ? GO:0002181 ... P62917 37410842
    44165 8fld:LQ (2.58) BS02 MG ? GO:0002181 ... P62910 37410842
    44166 8fld:LT (2.58) BS02 MG ? GO:0000049 ... P18077 37410842
    44167 8fld:SF (2.58) BS02 MG ? GO:0002181 ... P62917 37410842
    44168 8fle:LQ (2.48) BS02 MG ? GO:0002181 ... P62910 37410842
    44169 8fle:LR (2.48) BS02 MG ? GO:0002181 ... P49207 37410842
    44170 8fle:LT (2.48) BS02 MG ? GO:0000049 ... P18077 37410842
    44171 8fle:SF (2.48) BS02 MG ? GO:0002181 ... P62917 37410842
    44172 8flf:LM (2.65) BS02 MG ? GO:0002181 ... P47914 37410842
    44173 8flf:LQ (2.65) BS02 MG ? GO:0002181 ... P62910 37410842
    44174 8flf:LT (2.65) BS02 MG ? GO:0000049 ... P18077 37410842
    44175 8flf:SF (2.65) BS02 MG ? GO:0002181 ... P62917 37410842
    44176 8fmf:A (2.1) BS04 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44177 8fmf:B (2.1) BS05 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44178 8fmf:C (2.1) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44179 8fmf:D (2.1) BS04 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44180 8fmg:A (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44181 8fmg:C (1.79) BS01 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44182 8fmg:C (1.79) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44183 8fmg:E (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44184 8fmg:G (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44185 8fmg:K (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44186 8fmg:M (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44187 8fmh:A (1.87) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44188 8fmh:B (1.87) BS04 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44189 8fmh:C (1.87) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44190 8fmh:E (1.87) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44191 8fmh:F (1.87) BS04 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44192 8fmh:G (1.87) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    44193 8fn7:A (2.8) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44194 8fn7:A (2.8) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44195 8fn7:G (2.8) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44196 8fn7:G (2.8) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44197 8fnd:A (3.0) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44198 8fnd:A (3.0) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44199 8fnd:G (3.0) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    44200 8fnd:G (3.0) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497
    P42166    		 37478179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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