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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43401 8ewc:Ae (2.45) BS02 MG ? GO:0003735 ... N/A 37595043
    43402 8ewc:Af (2.45) BS02 MG ? GO:0000027 ... P05744 37595043
    43403 8ewc:Aj (2.45) BS03 MG ? GO:0000448 ... P49166 37595043
    43404 8exw:A (2.5) BS01 MG ? GO:0003774 ... P05661 N/A
    43405 8exx:A (3.3) BS03 MG N/A N/A H9E937 39197451
    43406 8exx:A (3.3) BS04 MG N/A N/A H9E937 39197451
    43407 8exy:D (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43408 8ezb:C (8.9) BS03 MG 2.7.11.1 GO:0000460 ... P78527 37256947
    43409 8ezb:L (8.9) BS03 MG 2.7.11.1 GO:0000460 ... P78527 37256947
    43410 8ezh:B (1.99) BS03 MG 5.1.2.1 GO:0016853 ... F9USS9 37886035
    43411 8ezi:B (1.99) BS04 MG 5.1.2.1 GO:0016853 ... F9USS9 37886035
    43412 8f18:A (3.2) BS01 MG 3.6.5.- GO:0000226 ... Q2XVP4 37726093
    43413 8f1e:D (3.28) BS01 MG ? GO:0003924 ... P32835 37450495
    43414 8f1i:J (3.0) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 36972428
    43415 8f1j:J (2.6) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 36972428
    43416 8f1k:J (2.8) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36972428
    43417 8f29:B (4.0) BS02 MG ? GO:0005524 ... P07251 38316880
    43418 8f39:A (3.5) BS02 MG ? GO:0005524 ... P07251 38316880
    43419 8f3c:J (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    43420 8f5b:A (3.95) BS03 MG 7.6.2.1 GO:0001523 ... P78363 39128720
    43421 8f5b:A (3.95) BS04 MG 7.6.2.1 GO:0001523 ... P78363 39128720
    43422 8f5f:B (3.149) BS02 MG 2.7.11.1
    2.7.11.4    		 GO:0004672 ... O14874 37558654
    43423 8f5m:A (2.4) BS01 MG ? GO:0046872 ... A7XXN5 38182597
    43424 8f5m:B (2.4) BS01 MG ? GO:0046872 ... A7XXN5 38182597
    43425 8f5t:A (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43426 8f5t:B (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43427 8f5t:C (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43428 8f5t:D (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43429 8f5t:E (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43430 8f5t:F (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43431 8f5t:G (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43432 8f5t:H (2.41) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43433 8f5u:A (2.3) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43434 8f5u:B (2.3) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43435 8f5u:C (2.3) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43436 8f5u:D (2.3) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    43437 8f72:A (2.7) BS01 MG ? GO:0046872 ... A7XX94 N/A
    43438 8f72:B (2.7) BS01 MG ? GO:0046872 ... A7XX94 N/A
    43439 8f90:A (1.6) BS01 MG N/A N/A A0A6N7UZI9 N/A
    43440 8f90:B (1.6) BS01 MG N/A N/A A0A6N7UZI9 N/A
    43441 8f90:C (1.6) BS01 MG N/A N/A A0A6N7UZI9 N/A
    43442 8f90:D (1.6) BS01 MG N/A N/A A0A6N7UZI9 N/A
    43443 8f9y:A (2.6) BS01 MG 3.1.3.57
    3.1.3.7    		 GO:0000103 ... Q42546 27432987
    43444 8fax:A (2.1) BS02 MG N/A N/A N/A 37014961
    43445 8fax:A (2.1) BS03 MG N/A N/A N/A 37014961
    43446 8faz:D (2.3) BS02 MG ? GO:0000400 ... O75771 37344589
    43447 8fc1:10 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    43448 8fc1:10 (2.5) BS04 MG ? GO:0003735 ... P60493 37452045
    43449 8fc1:11 (2.5) BS02 MG ? GO:0003735 ... P60494 37452045
    43450 8fc1:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    43451 8fc1:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    43452 8fc1:13 (2.5) BS05 MG ? GO:0003735 ... Q5SHQ6 37452045
    43453 8fc1:15 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    43454 8fc1:15 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    43455 8fc1:17 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    43456 8fc1:17 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    43457 8fc1:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    43458 8fc1:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    43459 8fc1:1D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    43460 8fc1:1D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    43461 8fc1:1D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    43462 8fc1:1D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    43463 8fc1:1D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    43464 8fc1:1D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    43465 8fc1:1D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    43466 8fc1:1D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    43467 8fc1:1D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    43468 8fc1:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    43469 8fc1:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    43470 8fc1:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    43471 8fc1:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    43472 8fc1:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    43473 8fc1:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    43474 8fc1:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    43475 8fc1:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    43476 8fc1:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    43477 8fc1:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    43478 8fc1:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    43479 8fc1:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    43480 8fc1:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    43481 8fc1:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    43482 8fc1:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    43483 8fc1:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    43484 8fc1:1F (2.5) BS14 MG ? GO:0003735 ... Q5SHN9 37452045
    43485 8fc1:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    43486 8fc1:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    43487 8fc1:1N (2.5) BS02 MG ? GO:0003729 ... P60488 37452045
    43488 8fc1:1N (2.5) BS03 MG ? GO:0003729 ... P60488 37452045
    43489 8fc1:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 37452045
    43490 8fc1:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    43491 8fc1:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    43492 8fc1:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    43493 8fc1:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    43494 8fc1:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 37452045
    43495 8fc1:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 37452045
    43496 8fc1:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    43497 8fc1:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    43498 8fc1:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    43499 8fc1:1R (2.5) BS05 MG ? GO:0003735 ... Q9Z9H5 37452045
    43500 8fc1:1R (2.5) BS06 MG ? GO:0003735 ... Q9Z9H5 37452045
    43501 8fc1:1T (2.5) BS03 MG ? GO:0003735 ... P60490 37452045
    43502 8fc1:1U (2.5) BS02 MG ? GO:0000027 ... P60491 37452045
    43503 8fc1:1U (2.5) BS03 MG ? GO:0000027 ... P60491 37452045
    43504 8fc1:1U (2.5) BS04 MG ? GO:0000027 ... P60491 37452045
    43505 8fc1:1U (2.5) BS05 MG ? GO:0000027 ... P60491 37452045
    43506 8fc1:1U (2.5) BS06 MG ? GO:0000027 ... P60491 37452045
    43507 8fc1:1V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    43508 8fc1:1V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    43509 8fc1:1V (2.5) BS04 MG ? GO:0003723 ... P60492 37452045
    43510 8fc1:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    43511 8fc1:1b (2.5) BS02 MG ? GO:0003735 ... P80371 37452045
    43512 8fc1:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    43513 8fc1:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    43514 8fc1:1k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    43515 8fc1:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    43516 8fc1:1m (2.5) BS03 MG ? GO:0000049 ... P80377 37452045
    43517 8fc1:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 37452045
    43518 8fc1:1t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    43519 8fc1:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 37452045
    43520 8fc1:20 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    43521 8fc1:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    43522 8fc1:25 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    43523 8fc1:25 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    43524 8fc1:27 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    43525 8fc1:27 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    43526 8fc1:2D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    43527 8fc1:2D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    43528 8fc1:2D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    43529 8fc1:2D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    43530 8fc1:2D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    43531 8fc1:2D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    43532 8fc1:2D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    43533 8fc1:2D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    43534 8fc1:2D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    43535 8fc1:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    43536 8fc1:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    43537 8fc1:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    43538 8fc1:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    43539 8fc1:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    43540 8fc1:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    43541 8fc1:2Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    43542 8fc1:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    43543 8fc1:2V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    43544 8fc1:2V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    43545 8fc1:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    43546 8fc1:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    43547 8fc1:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    43548 8fc1:2j (2.5) BS02 MG ? GO:0000049 ... Q5SHN7 37452045
    43549 8fc1:2k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    43550 8fc1:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    43551 8fc1:2t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    43552 8fc2:10 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    43553 8fc2:10 (2.5) BS04 MG ? GO:0003735 ... P60493 37452045
    43554 8fc2:11 (2.5) BS02 MG ? GO:0003735 ... P60494 37452045
    43555 8fc2:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    43556 8fc2:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    43557 8fc2:15 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    43558 8fc2:15 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    43559 8fc2:17 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    43560 8fc2:17 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    43561 8fc2:17 (2.5) BS04 MG ? GO:0003735 ... P80340 37452045
    43562 8fc2:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    43563 8fc2:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    43564 8fc2:1D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    43565 8fc2:1D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    43566 8fc2:1D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    43567 8fc2:1D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    43568 8fc2:1D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    43569 8fc2:1D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    43570 8fc2:1D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    43571 8fc2:1D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    43572 8fc2:1D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    43573 8fc2:1D (2.5) BS12 MG ? GO:0002181 ... P60405 37452045
    43574 8fc2:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    43575 8fc2:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    43576 8fc2:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    43577 8fc2:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    43578 8fc2:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    43579 8fc2:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    43580 8fc2:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    43581 8fc2:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    43582 8fc2:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    43583 8fc2:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    43584 8fc2:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    43585 8fc2:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    43586 8fc2:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    43587 8fc2:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    43588 8fc2:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    43589 8fc2:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    43590 8fc2:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    43591 8fc2:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    43592 8fc2:1N (2.5) BS02 MG ? GO:0003729 ... P60488 37452045
    43593 8fc2:1N (2.5) BS03 MG ? GO:0003729 ... P60488 37452045
    43594 8fc2:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    43595 8fc2:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    43596 8fc2:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    43597 8fc2:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    43598 8fc2:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 37452045
    43599 8fc2:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 37452045
    43600 8fc2:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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