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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43201 8ekb:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 36546783
    43202 8ekb:2D (2.7) BS03 MG ? GO:0002181 ... P60405 36546783
    43203 8ekb:2D (2.7) BS04 MG ? GO:0002181 ... P60405 36546783
    43204 8ekb:2D (2.7) BS05 MG ? GO:0002181 ... P60405 36546783
    43205 8ekb:2D (2.7) BS06 MG ? GO:0002181 ... P60405 36546783
    43206 8ekb:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 36546783
    43207 8ekb:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 36546783
    43208 8ekb:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 36546783
    43209 8ekb:2G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    43210 8ekb:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 36546783
    43211 8ekb:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 36546783
    43212 8ekb:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 36546783
    43213 8ekb:2U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    43214 8ekb:2V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    43215 8ekb:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    43216 8ekb:2Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 36546783
    43217 8ekb:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 36546783
    43218 8ekb:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 36546783
    43219 8ekb:2k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    43220 8ekb:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    43221 8ekb:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 36546783
    43222 8ekc:C (2.7) BS02 MG ? GO:0000027 ... P60422 36546783
    43223 8ekc:D (2.7) BS02 MG ? GO:0000027 ... P60438 36546783
    43224 8elf:A (2.0) BS01 MG ? N/A Q6DYE4 37100288
    43225 8elf:B (2.0) BS01 MG ? N/A Q6DYE4 37100288
    43226 8elk:A (1.8) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43227 8elr:A (2.05) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43228 8elr:A (2.05) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43229 8els:A (2.267) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43230 8elt:A (1.66) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43231 8elt:A (1.66) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43232 8elu:A (1.93) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43233 8elv:A (2.153) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43234 8elw:A (1.699) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43235 8elx:A (1.975) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43236 8ely:A (1.75) BS01 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43237 8ely:A (1.75) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43238 8elz:A (1.961) BS02 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43239 8em0:A (2.109) BS03 MG 3.6.5.2 GO:0000139 ... P01112 37615343
    43240 8eoe:D (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43241 8eof:D (3.3) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43242 8eop:A (3.7) BS02 MG 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    43243 8eos:D (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43244 8eot:D (3.3) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43245 8epw:A (2.0) BS02 MG 3.6.5.2 GO:0003924 ... P01116 37268708
    43246 8ero:A (3.2) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43247 8ero:A (3.2) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43248 8ero:B (3.2) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43249 8ero:B (3.2) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43250 8erp:A (3.7) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43251 8erp:A (3.7) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43252 8erp:B (3.7) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43253 8erp:B (3.7) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    43254 8et4:A (2.95) BS01 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    43255 8et4:A (2.95) BS05 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    43256 8et4:A (2.95) BS06 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    43257 8et5:A (2.94) BS01 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    43258 8et5:A (2.94) BS05 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    43259 8etd:B (2.78) BS01 MG ? GO:0000935 ... Q09914 36358328
    43260 8eub:AG (2.52) BS03 MG ? GO:0000470 ... P17076 37595043
    43261 8eub:AN (2.52) BS03 MG ? GO:0002181 ... P05748 37595043
    43262 8eub:AN (2.52) BS04 MG ? GO:0002181 ... P05748 37595043
    43263 8eub:AO (2.52) BS02 MG ? GO:0000470 ... P26784 37595043
    43264 8eub:AO (2.52) BS03 MG ? GO:0000470 ... P26784 37595043
    43265 8eub:Ae (2.52) BS02 MG ? GO:0003735 ... N/A 37595043
    43266 8eub:Af (2.52) BS02 MG ? GO:0000027 ... P05744 37595043
    43267 8eub:Af (2.52) BS03 MG ? GO:0000027 ... P05744 37595043
    43268 8eub:Ah (2.52) BS03 MG ? GO:0000463 ... P0CX84 37595043
    43269 8eub:Aj (2.52) BS03 MG ? GO:0000448 ... P49166 37595043
    43270 8ev6:18 (2.946) BS02 MG ? GO:0003735 ... Q5SKU1 37537169
    43271 8ev6:18 (2.946) BS03 MG ? GO:0003735 ... Q5SKU1 37537169
    43272 8ev6:18 (2.946) BS04 MG ? GO:0003735 ... Q5SKU1 37537169
    43273 8ev6:1D (2.946) BS03 MG ? GO:0002181 ... P60405 37537169
    43274 8ev6:1D (2.946) BS04 MG ? GO:0002181 ... P60405 37537169
    43275 8ev6:1D (2.946) BS05 MG ? GO:0002181 ... P60405 37537169
    43276 8ev6:1D (2.946) BS06 MG ? GO:0002181 ... P60405 37537169
    43277 8ev6:1E (2.946) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    43278 8ev6:1E (2.946) BS03 MG ? GO:0003735 ... Q5SHN8 37537169
    43279 8ev6:1F (2.946) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    43280 8ev6:1F (2.946) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    43281 8ev6:1F (2.946) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    43282 8ev6:1G (2.946) BS04 MG ? GO:0000049 ... Q5SHQ0 37537169
    43283 8ev6:1G (2.946) BS05 MG ? GO:0000049 ... Q5SHQ0 37537169
    43284 8ev6:1N (2.946) BS02 MG ? GO:0003729 ... P60488 37537169
    43285 8ev6:1Q (2.946) BS04 MG ? GO:0000049 ... P60489 37537169
    43286 8ev6:1Q (2.946) BS05 MG ? GO:0000049 ... P60489 37537169
    43287 8ev6:1U (2.946) BS02 MG ? GO:0000027 ... P60491 37537169
    43288 8ev6:1V (2.946) BS02 MG ? GO:0003723 ... P60492 37537169
    43289 8ev6:1W (2.946) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    43290 8ev6:1d (2.946) BS02 MG ? GO:0003723 ... P80373 37537169
    43291 8ev6:1e (2.946) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    43292 8ev6:1f (2.946) BS02 MG ? GO:0003735 ... Q5SLP8 37537169
    43293 8ev6:1f (2.946) BS03 MG ? GO:0003735 ... Q5SLP8 37537169
    43294 8ev6:1k (2.946) BS02 MG ? GO:0003735 ... P80376 37537169
    43295 8ev6:1l (2.946) BS02 MG ? GO:0000049 ... Q5SHN3 37537169
    43296 8ev6:1l (2.946) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    43297 8ev6:1l (2.946) BS04 MG ? GO:0000049 ... Q5SHN3 37537169
    43298 8ev6:1m (2.946) BS04 MG ? GO:0000049 ... P80377 37537169
    43299 8ev6:1p (2.946) BS02 MG ? GO:0003735 ... Q5SJH3 37537169
    43300 8ev6:2D (2.946) BS03 MG ? GO:0002181 ... P60405 37537169
    43301 8ev6:2D (2.946) BS04 MG ? GO:0002181 ... P60405 37537169
    43302 8ev6:2D (2.946) BS05 MG ? GO:0002181 ... P60405 37537169
    43303 8ev6:2E (2.946) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    43304 8ev6:2F (2.946) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    43305 8ev6:2F (2.946) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    43306 8ev6:2F (2.946) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    43307 8ev6:2O (2.946) BS03 MG ? GO:0003735 ... Q5SHP8 37537169
    43308 8ev6:2P (2.946) BS02 MG ? GO:0003735 ... Q5SHQ7 37537169
    43309 8ev6:2Q (2.946) BS04 MG ? GO:0000049 ... P60489 37537169
    43310 8ev6:2W (2.946) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    43311 8ev6:2e (2.946) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    43312 8ev6:2g (2.946) BS03 MG ? GO:0000028 ... P17291 37537169
    43313 8ev6:2t (2.946) BS02 MG ? GO:0003723 ... P80380 37537169
    43314 8ev7:18 (2.89) BS02 MG ? GO:0003735 ... Q5SKU1 37537169
    43315 8ev7:19 (2.89) BS02 MG ? GO:0003735 ... Q5SHR2 37537169
    43316 8ev7:1D (2.89) BS03 MG ? GO:0002181 ... P60405 37537169
    43317 8ev7:1D (2.89) BS04 MG ? GO:0002181 ... P60405 37537169
    43318 8ev7:1D (2.89) BS05 MG ? GO:0002181 ... P60405 37537169
    43319 8ev7:1E (2.89) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    43320 8ev7:1G (2.89) BS04 MG ? GO:0000049 ... Q5SHQ0 37537169
    43321 8ev7:1G (2.89) BS05 MG ? GO:0000049 ... Q5SHQ0 37537169
    43322 8ev7:1Q (2.89) BS04 MG ? GO:0000049 ... P60489 37537169
    43323 8ev7:1T (2.89) BS03 MG ? GO:0003735 ... P60490 37537169
    43324 8ev7:1T (2.89) BS04 MG ? GO:0003735 ... P60490 37537169
    43325 8ev7:1U (2.89) BS02 MG ? GO:0000027 ... P60491 37537169
    43326 8ev7:1V (2.89) BS02 MG ? GO:0003723 ... P60492 37537169
    43327 8ev7:1W (2.89) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    43328 8ev7:1e (2.89) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    43329 8ev7:1k (2.89) BS02 MG ? GO:0003735 ... P80376 37537169
    43330 8ev7:1l (2.89) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    43331 8ev7:1l (2.89) BS04 MG ? GO:0000049 ... Q5SHN3 37537169
    43332 8ev7:1l (2.89) BS05 MG ? GO:0000049 ... Q5SHN3 37537169
    43333 8ev7:1m (2.89) BS05 MG ? GO:0000049 ... P80377 37537169
    43334 8ev7:2D (2.89) BS03 MG ? GO:0002181 ... P60405 37537169
    43335 8ev7:2D (2.89) BS04 MG ? GO:0002181 ... P60405 37537169
    43336 8ev7:2E (2.89) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    43337 8ev7:2F (2.89) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    43338 8ev7:2F (2.89) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    43339 8ev7:2F (2.89) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    43340 8ev7:2e (2.89) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    43341 8ev7:2g (2.89) BS03 MG ? GO:0000028 ... P17291 37537169
    43342 8ev7:2g (2.89) BS04 MG ? GO:0000028 ... P17291 37537169
    43343 8ev7:2l (2.89) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    43344 8ev7:2t (2.89) BS02 MG ? GO:0003723 ... P80380 37537169
    43345 8evp:AC (2.38) BS03 MG ? GO:0003735 ... N/A 37595043
    43346 8evp:AN (2.38) BS03 MG ? GO:0002181 ... P05748 37595043
    43347 8evp:AP (2.38) BS03 MG ? GO:0000448 ... P05740 37595043
    43348 8evp:Af (2.38) BS02 MG ? GO:0000027 ... P05744 37595043
    43349 8evp:Aj (2.38) BS03 MG ? GO:0000448 ... P49166 37595043
    43350 8evp:BE (2.38) BS02 MG ? GO:0002181 ... P0CX35 37595043
    43351 8evq:AC (2.72) BS03 MG ? GO:0003735 ... N/A 37595043
    43352 8evq:AN (2.72) BS03 MG ? GO:0002181 ... P05748 37595043
    43353 8evq:Ae (2.72) BS02 MG ? GO:0003735 ... N/A 37595043
    43354 8evq:Ah (2.72) BS03 MG ? GO:0000463 ... P0CX84 37595043
    43355 8evq:Aj (2.72) BS03 MG ? GO:0000448 ... P49166 37595043
    43356 8evr:AN (2.87) BS03 MG ? GO:0002181 ... P05748 37595043
    43357 8evr:AO (2.87) BS02 MG ? GO:0000470 ... P26784 37595043
    43358 8evr:AT (2.87) BS03 MG ? GO:0002181 ... Q02753 37595043
    43359 8evs:AC (2.62) BS03 MG ? GO:0003735 ... N/A 37595043
    43360 8evs:AN (2.62) BS03 MG ? GO:0002181 ... P05748 37595043
    43361 8evs:Ae (2.62) BS02 MG ? GO:0003735 ... N/A 37595043
    43362 8evs:Ae (2.62) BS03 MG ? GO:0003735 ... N/A 37595043
    43363 8evs:Af (2.62) BS02 MG ? GO:0000027 ... P05744 37595043
    43364 8evs:Ah (2.62) BS03 MG ? GO:0000463 ... P0CX84 37595043
    43365 8evs:Aj (2.62) BS03 MG ? GO:0000448 ... P49166 37595043
    43366 8evt:AB (2.2) BS02 MG ? GO:0000027 ... P14126 37595043
    43367 8evt:AC (2.2) BS03 MG ? GO:0003735 ... N/A 37595043
    43368 8evt:AN (2.2) BS03 MG ? GO:0002181 ... P05748 37595043
    43369 8evt:AN (2.2) BS04 MG ? GO:0002181 ... P05748 37595043
    43370 8evt:AO (2.2) BS02 MG ? GO:0000470 ... P26784 37595043
    43371 8evt:Ae (2.2) BS02 MG ? GO:0003735 ... N/A 37595043
    43372 8evt:Af (2.2) BS02 MG ? GO:0000027 ... P05744 37595043
    43373 8evt:Af (2.2) BS03 MG ? GO:0000027 ... P05744 37595043
    43374 8evt:Aj (2.2) BS03 MG ? GO:0000448 ... P49166 37595043
    43375 8evt:Al (2.2) BS03 MG ? GO:0002181 ... P04650 37595043
    43376 8evt:BF (2.2) BS12 MG ? GO:0000028 ... A0A1L4AA68 37595043
    43377 8evt:BN (2.2) BS03 MG ? GO:0000462 ... P05756 37595043
    43378 8evw:A (1.22) BS04 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43379 8evw:A (1.22) BS05 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43380 8evw:B (1.22) BS04 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43381 8evw:B (1.22) BS05 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43382 8evx:A (1.55) BS03 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43383 8evx:A (1.55) BS04 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43384 8evx:B (1.55) BS03 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43385 8evx:B (1.55) BS04 MG 6.3.2.4 GO:0003824 ... Q9HWI0 37581574
    43386 8evy:A (2.35) BS03 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43387 8evy:A (2.35) BS04 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43388 8evy:B (2.35) BS03 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43389 8evy:B (2.35) BS04 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43390 8evy:C (2.35) BS03 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43391 8evy:C (2.35) BS04 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43392 8evz:A (2.45) BS01 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43393 8evz:A (2.45) BS02 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43394 8evz:B (2.45) BS01 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43395 8evz:B (2.45) BS02 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43396 8evz:C (2.45) BS01 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43397 8evz:C (2.45) BS02 MG 6.3.2.4 GO:0003824 ... Q9LCT6 37581574
    43398 8ewc:AA (2.45) BS02 MG ? GO:0002181 ... P0CX45 37595043
    43399 8ewc:AB (2.45) BS02 MG ? GO:0000027 ... P14126 37595043
    43400 8ewc:AN (2.45) BS03 MG ? GO:0002181 ... P05748 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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