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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43001 8e1h:A (1.9) BS03 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    43002 8e1h:A (1.9) BS04 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    43003 8e1i:A (2.0) BS03 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    43004 8e1i:A (2.0) BS04 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    43005 8e1t:A (1.71) BS03 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    43006 8e1u:A (2.65) BS01 MG N/A N/A N/A 37226637
    43007 8e1u:B (2.65) BS01 MG N/A N/A N/A 37226637
    43008 8e1u:C (2.65) BS01 MG N/A N/A N/A 37226637
    43009 8e1u:D (2.65) BS01 MG N/A N/A N/A 37226637
    43010 8e1u:E (2.65) BS01 MG N/A N/A N/A 37226637
    43011 8e1u:F (2.65) BS01 MG N/A N/A N/A 37226637
    43012 8e1u:G (2.65) BS01 MG N/A N/A N/A 37226637
    43013 8e1u:H (2.65) BS01 MG N/A N/A N/A 37226637
    43014 8e1v:A (1.9) BS02 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    43015 8e2l:B (3.51) BS04 MG ? GO:0003678 ... A0A4W6C5C5 36400570
    43016 8e2l:F (3.51) BS03 MG ? GO:0003678 ... A0A4W6C5C5 36400570
    43017 8e3f:B (6.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    43018 8e5d:A (2.39) BS04 MG 3.5.4.- N/A P0DUH5 37460895
    43019 8e5e:A (2.62) BS04 MG 3.5.4.- N/A P0DUH5 37460895
    43020 8e5k:B (4.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    43021 8e5o:B (4.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    43022 8e6x:B (4.27) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    43023 8e6z:B (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    43024 8e74:D (2.94) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    43025 8e79:D (3.71) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    43026 8e7v:B (3.1) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    43027 8e7v:C (3.1) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    43028 8e7v:D (3.1) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    43029 8e82:D (3.03) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    43030 8e87:A (2.19) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43031 8e87:A (2.19) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43032 8e88:A (2.4) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43033 8e88:A (2.4) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43034 8e8j:A (2.4) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43035 8e8j:A (2.4) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43036 8e8k:A (2.4) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43037 8e8k:A (2.4) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    43038 8e8m:D (3.13) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    43039 8e8q:B (3.12) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    43040 8e8q:C (3.12) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    43041 8e8q:D (3.12) BS03 MG ? GO:0005524 ... P0A6H1 N/A
    43042 8e91:B (2.57) BS02 MG ? GO:0002020 ... P0A6H1 N/A
    43043 8e91:C (2.57) BS02 MG ? GO:0002020 ... P0A6H1 N/A
    43044 8e95:D (2.9) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    43045 8e9a:A (2.69) BS02 MG 2.7.7.7 GO:0003677 ... P42494 37301907
    43046 8ea3:C (3.7) BS04 MG ? N/A A0A8J0PCL3 36442503
    43047 8ea3:I (3.7) BS01 MG ? N/A A0A8J0PCL3 36442503
    43048 8ea3:K (3.7) BS02 MG ? N/A A0A8J0PCL3 36442503
    43049 8ea3:W (3.7) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    43050 8ea3:X (3.7) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    43051 8ea4:C (3.0) BS03 MG ? N/A A0A8J0PCL3 36442503
    43052 8ea4:I (3.0) BS02 MG ? N/A A0A8J0PCL3 36442503
    43053 8ea4:J (3.0) BS01 MG ? N/A A0A8J0PCL3 36442503
    43054 8ea4:L (3.0) BS01 MG ? N/A A0A8J0PCL3 36442503
    43055 8ea4:W (3.0) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    43056 8ea4:X (3.0) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    43057 8eae:A (2.56) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    43058 8eae:C (2.56) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    43059 8ec3:A (1.5) BS01 MG ? N/A G9BXS5 37380082
    43060 8ecc:A (2.44) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    43061 8ecc:C (2.44) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    43062 8eew:B (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43063 8ef9:A (2.4) BS04 MG 2.7.7.7 GO:0003676 ... A0A4W6BKE5 36583344
    43064 8efc:A (2.8) BS04 MG 2.7.7.7 GO:0003676 ... A0A4W6BKE5 36583344
    43065 8efe:A (3.8) BS01 MG ? GO:0003774 ... P12883 36633586
    43066 8eff:B (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43067 8eff:D (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43068 8efh:A (3.3) BS01 MG ? GO:0003774 ... P12883 36633586
    43069 8efk:A (3.0) BS02 MG 2.7.7.7 GO:0003676 ... A0A4W6BKE5 36583344
    43070 8efr:E (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43071 8efr:L (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43072 8efr:M (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43073 8efr:N (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43074 8efr:O (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43075 8efr:P (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43076 8efr:Q (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43077 8efr:R (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    43078 8efy:A (3.16) BS03 MG 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    43079 8efy:C (3.16) BS04 MG 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    43080 8efy:K (3.16) BS04 MG 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    43081 8eg7:J (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43082 8eg8:J (3.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43083 8egb:J (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43084 8egd:A (2.047) BS02 MG 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 36717078
    43085 8eh8:J (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43086 8eh9:J (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43087 8eha:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43088 8ehf:J (3.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43089 8ehi:J (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36795753
    43090 8ehq:D (3.0) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43091 8eie:A (1.41) BS02 MG 3.6.5.2 GO:0000139 ... P01116 N/A
    43092 8eio:A (2.8) BS02 MG 5.6.1.6 GO:0005254 ... P13569 36264792
    43093 8eio:A (2.8) BS03 MG 5.6.1.6 GO:0005254 ... P13569 36264792
    43094 8eiq:A (3.0) BS02 MG 5.6.1.6 GO:0005254 ... P13569 36264792
    43095 8eiq:A (3.0) BS03 MG 5.6.1.6 GO:0005254 ... P13569 36264792
    43096 8ej0:A (2.59) BS02 MG ? GO:0016829 ... A0A4R3LQ44 36385513
    43097 8ej0:C (2.59) BS02 MG ? GO:0016829 ... A0A4R3LQ44 36385513
    43098 8ej0:E (2.59) BS02 MG ? GO:0016829 ... A0A4R3LQ44 36385513
    43099 8ej0:G (2.59) BS02 MG ? GO:0016829 ... A0A4R3LQ44 36385513
    43100 8ej3:D (3.13) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    43101 8ej4:A (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43102 8ej4:B (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43103 8ej4:C (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43104 8ej4:D (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43105 8ej4:E (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43106 8ej4:F (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43107 8ej4:G (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43108 8ej4:H (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43109 8ej4:I (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43110 8ej4:J (3.4) BS02 MG 3.6.4.- N/A Q96P20 36442502
    43111 8ek7:C (1.65) BS01 MG N/A GO:0004590 ... N/A N/A
    43112 8ek7:E (1.65) BS01 MG N/A GO:0004590 ... N/A N/A
    43113 8ekb:10 (2.7) BS03 MG ? GO:0003735 ... P60493 36546783
    43114 8ekb:10 (2.7) BS04 MG ? GO:0003735 ... P60493 36546783
    43115 8ekb:10 (2.7) BS05 MG ? GO:0003735 ... P60493 36546783
    43116 8ekb:11 (2.7) BS02 MG ? GO:0003735 ... P60494 36546783
    43117 8ekb:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 36546783
    43118 8ekb:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 36546783
    43119 8ekb:16 (2.7) BS02 MG ? GO:0000049 ... P35871 36546783
    43120 8ekb:17 (2.7) BS02 MG ? GO:0003735 ... P80340 36546783
    43121 8ekb:17 (2.7) BS03 MG ? GO:0003735 ... P80340 36546783
    43122 8ekb:17 (2.7) BS04 MG ? GO:0003735 ... P80340 36546783
    43123 8ekb:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 36546783
    43124 8ekb:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 36546783
    43125 8ekb:18 (2.7) BS04 MG ? GO:0003735 ... Q5SKU1 36546783
    43126 8ekb:1D (2.7) BS03 MG ? GO:0002181 ... P60405 36546783
    43127 8ekb:1D (2.7) BS04 MG ? GO:0002181 ... P60405 36546783
    43128 8ekb:1D (2.7) BS05 MG ? GO:0002181 ... P60405 36546783
    43129 8ekb:1D (2.7) BS06 MG ? GO:0002181 ... P60405 36546783
    43130 8ekb:1D (2.7) BS07 MG ? GO:0002181 ... P60405 36546783
    43131 8ekb:1D (2.7) BS08 MG ? GO:0002181 ... P60405 36546783
    43132 8ekb:1D (2.7) BS09 MG ? GO:0002181 ... P60405 36546783
    43133 8ekb:1D (2.7) BS10 MG ? GO:0002181 ... P60405 36546783
    43134 8ekb:1D (2.7) BS11 MG ? GO:0002181 ... P60405 36546783
    43135 8ekb:1D (2.7) BS12 MG ? GO:0002181 ... P60405 36546783
    43136 8ekb:1D (2.7) BS13 MG ? GO:0002181 ... P60405 36546783
    43137 8ekb:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 36546783
    43138 8ekb:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 36546783
    43139 8ekb:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 36546783
    43140 8ekb:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 36546783
    43141 8ekb:1E (2.7) BS06 MG ? GO:0003735 ... Q5SHN8 36546783
    43142 8ekb:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 36546783
    43143 8ekb:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 36546783
    43144 8ekb:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 36546783
    43145 8ekb:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 36546783
    43146 8ekb:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 36546783
    43147 8ekb:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 36546783
    43148 8ekb:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 36546783
    43149 8ekb:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 36546783
    43150 8ekb:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 36546783
    43151 8ekb:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 36546783
    43152 8ekb:1N (2.7) BS02 MG ? GO:0003729 ... P60488 36546783
    43153 8ekb:1N (2.7) BS03 MG ? GO:0003729 ... P60488 36546783
    43154 8ekb:1N (2.7) BS04 MG ? GO:0003729 ... P60488 36546783
    43155 8ekb:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 36546783
    43156 8ekb:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 36546783
    43157 8ekb:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 36546783
    43158 8ekb:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 36546783
    43159 8ekb:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 36546783
    43160 8ekb:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 36546783
    43161 8ekb:1P (2.7) BS07 MG ? GO:0003735 ... Q5SHQ7 36546783
    43162 8ekb:1Q (2.7) BS03 MG ? GO:0000049 ... P60489 36546783
    43163 8ekb:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 36546783
    43164 8ekb:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 36546783
    43165 8ekb:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 36546783
    43166 8ekb:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 36546783
    43167 8ekb:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 36546783
    43168 8ekb:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 36546783
    43169 8ekb:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 36546783
    43170 8ekb:1T (2.7) BS03 MG ? GO:0003735 ... P60490 36546783
    43171 8ekb:1U (2.7) BS02 MG ? GO:0000027 ... P60491 36546783
    43172 8ekb:1U (2.7) BS03 MG ? GO:0000027 ... P60491 36546783
    43173 8ekb:1U (2.7) BS04 MG ? GO:0000027 ... P60491 36546783
    43174 8ekb:1U (2.7) BS05 MG ? GO:0000027 ... P60491 36546783
    43175 8ekb:1U (2.7) BS06 MG ? GO:0000027 ... P60491 36546783
    43176 8ekb:1U (2.7) BS07 MG ? GO:0000027 ... P60491 36546783
    43177 8ekb:1U (2.7) BS08 MG ? GO:0000027 ... P60491 36546783
    43178 8ekb:1V (2.7) BS02 MG ? GO:0003723 ... P60492 36546783
    43179 8ekb:1V (2.7) BS03 MG ? GO:0003723 ... P60492 36546783
    43180 8ekb:1V (2.7) BS04 MG ? GO:0003723 ... P60492 36546783
    43181 8ekb:1V (2.7) BS05 MG ? GO:0003723 ... P60492 36546783
    43182 8ekb:1V (2.7) BS06 MG ? GO:0003723 ... P60492 36546783
    43183 8ekb:1V (2.7) BS07 MG ? GO:0003723 ... P60492 36546783
    43184 8ekb:1V (2.7) BS08 MG ? GO:0003723 ... P60492 36546783
    43185 8ekb:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 36546783
    43186 8ekb:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 36546783
    43187 8ekb:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 36546783
    43188 8ekb:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 36546783
    43189 8ekb:1W (2.7) BS06 MG ? GO:0003735 ... Q5SHP3 36546783
    43190 8ekb:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 36546783
    43191 8ekb:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 36546783
    43192 8ekb:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 36546783
    43193 8ekb:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 36546783
    43194 8ekb:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 36546783
    43195 8ekb:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 36546783
    43196 8ekb:1b (2.7) BS02 MG ? GO:0003735 ... P80371 36546783
    43197 8ekb:1k (2.7) BS02 MG ? GO:0003735 ... P80376 36546783
    43198 8ekb:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 36546783
    43199 8ekb:1m (2.7) BS04 MG ? GO:0000049 ... P80377 36546783
    43200 8ekb:1t (2.7) BS02 MG ? GO:0003723 ... P80380 36546783
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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