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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42801 8cvl:1N (2.3) BS03 MG ? GO:0003729 ... P60488 36316410
    42802 8cvl:1N (2.3) BS04 MG ? GO:0003729 ... P60488 36316410
    42803 8cvl:1N (2.3) BS05 MG ? GO:0003729 ... P60488 36316410
    42804 8cvl:1O (2.3) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    42805 8cvl:1O (2.3) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    42806 8cvl:1O (2.3) BS05 MG ? GO:0003735 ... Q5SHP8 36316410
    42807 8cvl:1P (2.3) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    42808 8cvl:1P (2.3) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    42809 8cvl:1P (2.3) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    42810 8cvl:1P (2.3) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    42811 8cvl:1Q (2.3) BS05 MG ? GO:0000049 ... P60489 36316410
    42812 8cvl:1Q (2.3) BS06 MG ? GO:0000049 ... P60489 36316410
    42813 8cvl:1Q (2.3) BS07 MG ? GO:0000049 ... P60489 36316410
    42814 8cvl:1Q (2.3) BS08 MG ? GO:0000049 ... P60489 36316410
    42815 8cvl:1Q (2.3) BS09 MG ? GO:0000049 ... P60489 36316410
    42816 8cvl:1R (2.3) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    42817 8cvl:1R (2.3) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    42818 8cvl:1R (2.3) BS04 MG ? GO:0003735 ... Q9Z9H5 36316410
    42819 8cvl:1S (2.3) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    42820 8cvl:1S (2.3) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    42821 8cvl:1U (2.3) BS02 MG ? GO:0000027 ... P60491 36316410
    42822 8cvl:1U (2.3) BS03 MG ? GO:0000027 ... P60491 36316410
    42823 8cvl:1U (2.3) BS04 MG ? GO:0000027 ... P60491 36316410
    42824 8cvl:1U (2.3) BS05 MG ? GO:0000027 ... P60491 36316410
    42825 8cvl:1U (2.3) BS06 MG ? GO:0000027 ... P60491 36316410
    42826 8cvl:1U (2.3) BS07 MG ? GO:0000027 ... P60491 36316410
    42827 8cvl:1V (2.3) BS02 MG ? GO:0003723 ... P60492 36316410
    42828 8cvl:1V (2.3) BS03 MG ? GO:0003723 ... P60492 36316410
    42829 8cvl:1V (2.3) BS04 MG ? GO:0003723 ... P60492 36316410
    42830 8cvl:1V (2.3) BS05 MG ? GO:0003723 ... P60492 36316410
    42831 8cvl:1V (2.3) BS06 MG ? GO:0003723 ... P60492 36316410
    42832 8cvl:1W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    42833 8cvl:1W (2.3) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    42834 8cvl:1W (2.3) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    42835 8cvl:1W (2.3) BS05 MG ? GO:0003735 ... Q5SHP3 36316410
    42836 8cvl:1X (2.3) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    42837 8cvl:1X (2.3) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    42838 8cvl:1X (2.3) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    42839 8cvl:1X (2.3) BS05 MG ? GO:0000027 ... Q5SHP0 36316410
    42840 8cvl:1X (2.3) BS06 MG ? GO:0000027 ... Q5SHP0 36316410
    42841 8cvl:1Y (2.3) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    42842 8cvl:1Z (2.3) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    42843 8cvl:1e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    42844 8cvl:1e (2.3) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    42845 8cvl:1f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    42846 8cvl:1k (2.3) BS02 MG ? GO:0003735 ... P80376 36316410
    42847 8cvl:1l (2.3) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    42848 8cvl:1m (2.3) BS04 MG ? GO:0000049 ... P80377 36316410
    42849 8cvl:1t (2.3) BS02 MG ? GO:0003723 ... P80380 36316410
    42850 8cvl:21 (2.3) BS03 MG ? GO:0003735 ... P60494 36316410
    42851 8cvl:23 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    42852 8cvl:26 (2.3) BS02 MG ? GO:0000049 ... P35871 36316410
    42853 8cvl:27 (2.3) BS02 MG ? GO:0003735 ... P80340 36316410
    42854 8cvl:2D (2.3) BS03 MG ? GO:0002181 ... P60405 36316410
    42855 8cvl:2D (2.3) BS04 MG ? GO:0002181 ... P60405 36316410
    42856 8cvl:2D (2.3) BS05 MG ? GO:0002181 ... P60405 36316410
    42857 8cvl:2D (2.3) BS06 MG ? GO:0002181 ... P60405 36316410
    42858 8cvl:2D (2.3) BS07 MG ? GO:0002181 ... P60405 36316410
    42859 8cvl:2E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    42860 8cvl:2F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    42861 8cvl:2F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    42862 8cvl:2F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    42863 8cvl:2F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    42864 8cvl:2G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    42865 8cvl:2Q (2.3) BS05 MG ? GO:0000049 ... P60489 36316410
    42866 8cvl:2Q (2.3) BS06 MG ? GO:0000049 ... P60489 36316410
    42867 8cvl:2U (2.3) BS02 MG ? GO:0000027 ... P60491 36316410
    42868 8cvl:2V (2.3) BS02 MG ? GO:0003723 ... P60492 36316410
    42869 8cvl:2W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    42870 8cvl:2X (2.3) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    42871 8cvl:2Z (2.3) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    42872 8cvl:2e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    42873 8cvl:2f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    42874 8cvl:2k (2.3) BS02 MG ? GO:0003735 ... P80376 36316410
    42875 8cvl:2l (2.3) BS02 MG ? GO:0000049 ... Q5SHN3 36316410
    42876 8cvl:2l (2.3) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    42877 8cvl:2l (2.3) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    42878 8cvl:2q (2.3) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    42879 8cvl:2r (2.3) BS02 MG ? GO:0003735 ... Q5SLQ0 36316410
    42880 8cvm:1 (2.66) BS02 MG ? GO:0003735 ... Q6A5A1 36864821
    42881 8cvm:c (2.66) BS02 MG ? GO:0002181 ... Q6A6M9 36864821
    42882 8cvm:k (2.66) BS02 MG ? GO:0003735 ... Q6A6P5 36864821
    42883 8d16:A (3.71) BS02 MG 3.6.4.- GO:0001725 ... P68139 36289330
    42884 8d2k:A (2.43) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    42885 8d2k:A (2.43) BS06 MG ? GO:0003676 ... A0LWB3 38348449
    42886 8d2k:A (2.43) BS07 MG ? GO:0003676 ... A0LWB3 38348449
    42887 8d2k:A (2.43) BS08 MG ? GO:0003676 ... A0LWB3 38348449
    42888 8d2k:A (2.43) BS09 MG ? GO:0003676 ... A0LWB3 38348449
    42889 8d2l:A (2.21) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    42890 8d2l:A (2.21) BS06 MG ? GO:0003676 ... A0LWB3 38348449
    42891 8d2l:A (2.21) BS07 MG ? GO:0003676 ... A0LWB3 38348449
    42892 8d2l:A (2.21) BS08 MG ? GO:0003676 ... A0LWB3 38348449
    42893 8d2l:A (2.21) BS09 MG ? GO:0003676 ... A0LWB3 38348449
    42894 8d2l:A (2.21) BS10 MG ? GO:0003676 ... A0LWB3 38348449
    42895 8d2n:A (2.88) BS04 MG ? GO:0003676 ... A0LWB3 38348449
    42896 8d2o:A (2.66) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    42897 8d2p:A (2.78) BS03 MG ? GO:0003676 ... A0LWB3 38348449
    42898 8d2p:A (2.78) BS04 MG ? GO:0003676 ... A0LWB3 38348449
    42899 8d2p:A (2.78) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    42900 8d2p:A (2.78) BS06 MG ? GO:0003676 ... A0LWB3 38348449
    42901 8d2q:A (2.58) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    42902 8d4a:A (2.74) BS06 MG ? GO:0003677 ... A0A0C2W1L1 36599980
    42903 8d4a:A (2.74) BS07 MG ? GO:0003677 ... A0A0C2W1L1 36599980
    42904 8d4t:N (3.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 35858451
    42905 8d6j:A (2.5) BS02 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 37082939
    42906 8d86:C (3.12) BS03 MG ? GO:0003677 ... P03856 37407546
    42907 8d8k:B (3.13) BS02 MG ? GO:0003735 ... P32902 36482135
    42908 8d8l:B (2.6) BS02 MG ? GO:0003735 ... P32902 36482135
    42909 8d9d:C (3.59) BS03 MG 2.7.7.7 GO:0000166 ... P09884 37069376
    42910 8dba:A (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    42911 8dba:B (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    42912 8dba:G (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    42913 8dba:H (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    42914 8dba:K (3.5) BS04 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    42915 8dbq:E (4.0) BS03 MG 7.1.2.2 GO:0005515 ... P0ABB4 36631659
    42916 8dbs:E (3.5) BS02 MG 7.1.2.2 GO:0005515 ... P0ABB4 36631659
    42917 8dbu:E (3.4) BS02 MG 7.1.2.2 GO:0005515 ... P0ABB4 36631659
    42918 8dck:A (3.4) BS02 MG ? GO:0005524 ... Q8FDZ8 36055198
    42919 8dck:B (3.4) BS03 MG ? GO:0005524 ... Q8FDZ8 36055198
    42920 8dck:E (3.4) BS02 MG ? GO:0005524 ... Q8FDZ8 36055198
    42921 8dck:F (3.4) BS03 MG ? GO:0005524 ... Q8FDZ8 36055198
    42922 8dck:I (3.4) BS02 MG ? GO:0005524 ... Q8FDZ8 36055198
    42923 8dck:J (3.4) BS03 MG ? GO:0005524 ... Q8FDZ8 36055198
    42924 8df9:A (3.24) BS03 MG ? GO:0003677 ... Q977W1 35969036
    42925 8df9:A (3.24) BS04 MG ? GO:0003677 ... Q977W1 35969036
    42926 8df9:B (3.24) BS05 MG ? GO:0003677 ... Q977W1 35969036
    42927 8df9:B (3.24) BS06 MG ? GO:0003677 ... Q977W1 35969036
    42928 8df9:B (3.24) BS07 MG ? GO:0003677 ... Q977W1 35969036
    42929 8dfd:E (2.12) BS04 MG 1.18.6.1 GO:0005524 ... P00459 38575747
    42930 8dfd:F (2.12) BS05 MG 1.18.6.1 GO:0005524 ... P00459 38575747
    42931 8dg5:A (3.26) BS02 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    42932 8dg5:A (3.26) BS04 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    42933 8dg7:A (3.32) BS03 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    42934 8dg7:A (3.32) BS04 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    42935 8dgs:E (4.3) BS01 MG 3.6.5.2 GO:0003924 ... P01116 37516774
    42936 8dgt:B (3.9) BS01 MG 2.7.12.2 GO:0000165 ... Q02750 37516774
    42937 8dgt:F (3.9) BS01 MG 3.6.5.2 GO:0003924 ... P01116 37516774
    42938 8dht:A (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    42939 8dht:B (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    42940 8dht:C (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    42941 8dht:D (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    42942 8dk2:C (4.1) BS03 MG N/A N/A N/A 36206765
    42943 8dk2:D (4.1) BS03 MG N/A N/A N/A 36206765
    42944 8dkr:A (2.05) BS01 MG 3.1.-.- N/A A0A2K8HL37 36007626
    42945 8dkr:B (2.05) BS01 MG 3.1.-.- N/A A0A2K8HL37 36007626
    42946 8dmf:A (4.0) BS01 MG ? GO:0003746 ... Q8A5S1 36472247
    42947 8dpb:A (2.72) BS01 MG ? GO:0003924 ... C5AP93 36787360
    42948 8dpb:B (2.72) BS01 MG ? GO:0003924 ... C5AP93 36787360
    42949 8dpd:A (1.51) BS01 MG ? GO:0003674 ... P42212 N/A
    42950 8dpd:A (1.51) BS02 MG ? GO:0003674 ... P42212 N/A
    42951 8dq3:A (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    42952 8dq3:B (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    42953 8dq3:C (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    42954 8dq3:D (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    42955 8dqg:A (1.49) BS02 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    42956 8dqg:D (1.49) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    42957 8dqh:A (1.52) BS02 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    42958 8dqh:D (1.52) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    42959 8dqi:D (1.54) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    42960 8dqj:D (1.54) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    42961 8dqv:A (1.52) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    42962 8dqv:C (1.52) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    42963 8dqw:A (2.1) BS04 MG ? GO:0000077 ... P32641 35939393
    42964 8dqz:C (2.92) BS03 MG ? GO:0000077 ... P38629 35939393
    42965 8dr0:A (2.42) BS04 MG ? GO:0000278 ... P38630 35939393
    42966 8dr5:A (2.76) BS05 MG ? GO:0000278 ... P38630 35939393
    42967 8dsw:A (2.39) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    42968 8dte:A (2.2) BS01 MG ? GO:0046872 ... B4RRD5 N/A
    42969 8dtp:B (2.7) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42970 8dtp:C (2.7) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42971 8due:B (2.9) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42972 8duo:B (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42973 8duo:D (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42974 8duo:E (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42975 8duo:F (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42976 8dvf:B (3.3) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42977 8dvf:C (3.3) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42978 8dvi:B (3.2) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42979 8dvi:C (3.2) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42980 8dw6:B (3.5) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42981 8dw6:C (3.5) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    42982 8dx0:B (1.45) BS01 MG 2.7.13.3 GO:0016310 ... Q9KJT3 36764524
    42983 8dx2:A (2.0) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42984 8dx8:A (1.85) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42985 8dxe:A (1.85) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42986 8dxg:A (2.1) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42987 8dxh:A (1.8) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42988 8dxi:A (1.95) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42989 8dxj:A (1.8) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42990 8dxk:A (2.0) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42991 8dxl:A (2.25) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42992 8dxm:A (1.99) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    42993 8dy7:D (3.18) BS04 MG 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    42994 8dy9:D (3.12) BS05 MG 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    42995 8dyo:B (7.1) BS01 MG ? GO:0000054 ... P32835 36103578
    42996 8dzo:A (1.8) BS01 MG 3.6.5.2 GO:0003400 ... Q9NR31 36369712
    42997 8dzt:A (1.8) BS01 MG 3.6.5.2 GO:0003400 ... Q9NR31 36369712
    42998 8e0e:A (2.0) BS01 MG ? GO:0005245 ... A0A8I6AEJ4 36494348
    42999 8e1f:D (2.16) BS01 MG ? GO:0043565 ... P41212 N/A
    43000 8e1f:D (2.16) BS02 MG ? GO:0043565 ... P41212 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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