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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42601 8cvj:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    42602 8cvj:1e (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    42603 8cvj:1f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    42604 8cvj:1k (2.4) BS02 MG ? GO:0003735 ... P80376 36316410
    42605 8cvj:1l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    42606 8cvj:1m (2.4) BS04 MG ? GO:0000049 ... P80377 36316410
    42607 8cvj:20 (2.4) BS04 MG ? GO:0003735 ... P60493 36316410
    42608 8cvj:21 (2.4) BS03 MG ? GO:0003735 ... P60494 36316410
    42609 8cvj:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    42610 8cvj:25 (2.4) BS02 MG ? GO:0003735 ... P80339 36316410
    42611 8cvj:25 (2.4) BS03 MG ? GO:0003735 ... P80339 36316410
    42612 8cvj:26 (2.4) BS02 MG ? GO:0000049 ... P35871 36316410
    42613 8cvj:28 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    42614 8cvj:2D (2.4) BS03 MG ? GO:0002181 ... P60405 36316410
    42615 8cvj:2D (2.4) BS04 MG ? GO:0002181 ... P60405 36316410
    42616 8cvj:2D (2.4) BS05 MG ? GO:0002181 ... P60405 36316410
    42617 8cvj:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    42618 8cvj:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    42619 8cvj:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    42620 8cvj:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    42621 8cvj:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    42622 8cvj:2G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    42623 8cvj:2O (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    42624 8cvj:2Q (2.4) BS05 MG ? GO:0000049 ... P60489 36316410
    42625 8cvj:2Q (2.4) BS06 MG ? GO:0000049 ... P60489 36316410
    42626 8cvj:2U (2.4) BS02 MG ? GO:0000027 ... P60491 36316410
    42627 8cvj:2V (2.4) BS02 MG ? GO:0003723 ... P60492 36316410
    42628 8cvj:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    42629 8cvj:2W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    42630 8cvj:2X (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    42631 8cvj:2Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    42632 8cvj:2e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    42633 8cvj:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    42634 8cvj:2g (2.4) BS03 MG ? GO:0000028 ... P17291 36316410
    42635 8cvj:2k (2.4) BS02 MG ? GO:0003735 ... P80376 36316410
    42636 8cvj:2l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    42637 8cvj:2l (2.4) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    42638 8cvj:2q (2.4) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    42639 8cvj:2q (2.4) BS03 MG ? GO:0003735 ... P0DOY7 36316410
    42640 8cvj:2r (2.4) BS02 MG ? GO:0003735 ... Q5SLQ0 36316410
    42641 8cvj:2t (2.4) BS02 MG ? GO:0003723 ... P80380 36316410
    42642 8cvk:10 (2.5) BS04 MG ? GO:0003735 ... P60493 36316410
    42643 8cvk:10 (2.5) BS05 MG ? GO:0003735 ... P60493 36316410
    42644 8cvk:11 (2.5) BS03 MG ? GO:0003735 ... P60494 36316410
    42645 8cvk:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    42646 8cvk:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    42647 8cvk:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 36316410
    42648 8cvk:15 (2.5) BS02 MG ? GO:0003735 ... P80339 36316410
    42649 8cvk:15 (2.5) BS03 MG ? GO:0003735 ... P80339 36316410
    42650 8cvk:16 (2.5) BS02 MG ? GO:0000049 ... P35871 36316410
    42651 8cvk:17 (2.5) BS02 MG ? GO:0003735 ... P80340 36316410
    42652 8cvk:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    42653 8cvk:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    42654 8cvk:18 (2.5) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    42655 8cvk:18 (2.5) BS05 MG ? GO:0003735 ... Q5SKU1 36316410
    42656 8cvk:1D (2.5) BS03 MG ? GO:0002181 ... P60405 36316410
    42657 8cvk:1D (2.5) BS04 MG ? GO:0002181 ... P60405 36316410
    42658 8cvk:1D (2.5) BS05 MG ? GO:0002181 ... P60405 36316410
    42659 8cvk:1D (2.5) BS06 MG ? GO:0002181 ... P60405 36316410
    42660 8cvk:1D (2.5) BS07 MG ? GO:0002181 ... P60405 36316410
    42661 8cvk:1D (2.5) BS08 MG ? GO:0002181 ... P60405 36316410
    42662 8cvk:1D (2.5) BS09 MG ? GO:0002181 ... P60405 36316410
    42663 8cvk:1D (2.5) BS10 MG ? GO:0002181 ... P60405 36316410
    42664 8cvk:1D (2.5) BS11 MG ? GO:0002181 ... P60405 36316410
    42665 8cvk:1D (2.5) BS12 MG ? GO:0002181 ... P60405 36316410
    42666 8cvk:1D (2.5) BS13 MG ? GO:0002181 ... P60405 36316410
    42667 8cvk:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    42668 8cvk:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    42669 8cvk:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    42670 8cvk:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 36316410
    42671 8cvk:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 36316410
    42672 8cvk:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    42673 8cvk:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    42674 8cvk:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    42675 8cvk:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    42676 8cvk:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    42677 8cvk:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    42678 8cvk:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    42679 8cvk:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    42680 8cvk:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 36316410
    42681 8cvk:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    42682 8cvk:1I (2.5) BS02 MG ? GO:0003735 ... Q5SLQ1 36316410
    42683 8cvk:1N (2.5) BS02 MG ? GO:0003729 ... P60488 36316410
    42684 8cvk:1N (2.5) BS03 MG ? GO:0003729 ... P60488 36316410
    42685 8cvk:1N (2.5) BS04 MG ? GO:0003729 ... P60488 36316410
    42686 8cvk:1N (2.5) BS05 MG ? GO:0003729 ... P60488 36316410
    42687 8cvk:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    42688 8cvk:1O (2.5) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    42689 8cvk:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    42690 8cvk:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    42691 8cvk:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    42692 8cvk:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    42693 8cvk:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 36316410
    42694 8cvk:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 36316410
    42695 8cvk:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 36316410
    42696 8cvk:1Q (2.5) BS08 MG ? GO:0000049 ... P60489 36316410
    42697 8cvk:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    42698 8cvk:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    42699 8cvk:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    42700 8cvk:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    42701 8cvk:1U (2.5) BS02 MG ? GO:0000027 ... P60491 36316410
    42702 8cvk:1U (2.5) BS03 MG ? GO:0000027 ... P60491 36316410
    42703 8cvk:1U (2.5) BS04 MG ? GO:0000027 ... P60491 36316410
    42704 8cvk:1U (2.5) BS05 MG ? GO:0000027 ... P60491 36316410
    42705 8cvk:1U (2.5) BS06 MG ? GO:0000027 ... P60491 36316410
    42706 8cvk:1U (2.5) BS07 MG ? GO:0000027 ... P60491 36316410
    42707 8cvk:1U (2.5) BS08 MG ? GO:0000027 ... P60491 36316410
    42708 8cvk:1V (2.5) BS02 MG ? GO:0003723 ... P60492 36316410
    42709 8cvk:1V (2.5) BS03 MG ? GO:0003723 ... P60492 36316410
    42710 8cvk:1V (2.5) BS04 MG ? GO:0003723 ... P60492 36316410
    42711 8cvk:1V (2.5) BS05 MG ? GO:0003723 ... P60492 36316410
    42712 8cvk:1V (2.5) BS06 MG ? GO:0003723 ... P60492 36316410
    42713 8cvk:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    42714 8cvk:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    42715 8cvk:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    42716 8cvk:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    42717 8cvk:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    42718 8cvk:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    42719 8cvk:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 36316410
    42720 8cvk:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 36316410
    42721 8cvk:1Y (2.5) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    42722 8cvk:1Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    42723 8cvk:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    42724 8cvk:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    42725 8cvk:1k (2.5) BS02 MG ? GO:0003735 ... P80376 36316410
    42726 8cvk:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    42727 8cvk:1m (2.5) BS04 MG ? GO:0000049 ... P80377 36316410
    42728 8cvk:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    42729 8cvk:25 (2.5) BS02 MG ? GO:0003735 ... P80339 36316410
    42730 8cvk:26 (2.5) BS02 MG ? GO:0000049 ... P35871 36316410
    42731 8cvk:28 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    42732 8cvk:2D (2.5) BS03 MG ? GO:0002181 ... P60405 36316410
    42733 8cvk:2D (2.5) BS04 MG ? GO:0002181 ... P60405 36316410
    42734 8cvk:2D (2.5) BS05 MG ? GO:0002181 ... P60405 36316410
    42735 8cvk:2D (2.5) BS06 MG ? GO:0002181 ... P60405 36316410
    42736 8cvk:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    42737 8cvk:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    42738 8cvk:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    42739 8cvk:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    42740 8cvk:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    42741 8cvk:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    42742 8cvk:2Q (2.5) BS05 MG ? GO:0000049 ... P60489 36316410
    42743 8cvk:2Q (2.5) BS06 MG ? GO:0000049 ... P60489 36316410
    42744 8cvk:2T (2.5) BS03 MG ? GO:0003735 ... P60490 36316410
    42745 8cvk:2U (2.5) BS02 MG ? GO:0000027 ... P60491 36316410
    42746 8cvk:2V (2.5) BS02 MG ? GO:0003723 ... P60492 36316410
    42747 8cvk:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    42748 8cvk:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    42749 8cvk:2X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    42750 8cvk:2Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    42751 8cvk:2d (2.5) BS02 MG ? GO:0003723 ... P80373 36316410
    42752 8cvk:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    42753 8cvk:2g (2.5) BS03 MG ? GO:0000028 ... P17291 36316410
    42754 8cvk:2k (2.5) BS02 MG ? GO:0003735 ... P80376 36316410
    42755 8cvk:2l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    42756 8cvk:2l (2.5) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    42757 8cvk:2l (2.5) BS05 MG ? GO:0000049 ... Q5SHN3 36316410
    42758 8cvk:2q (2.5) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    42759 8cvk:2q (2.5) BS03 MG ? GO:0003735 ... P0DOY7 36316410
    42760 8cvl:10 (2.3) BS04 MG ? GO:0003735 ... P60493 36316410
    42761 8cvl:10 (2.3) BS05 MG ? GO:0003735 ... P60493 36316410
    42762 8cvl:10 (2.3) BS06 MG ? GO:0003735 ... P60493 36316410
    42763 8cvl:11 (2.3) BS03 MG ? GO:0003735 ... P60494 36316410
    42764 8cvl:11 (2.3) BS04 MG ? GO:0003735 ... P60494 36316410
    42765 8cvl:12 (2.3) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    42766 8cvl:13 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    42767 8cvl:13 (2.3) BS04 MG ? GO:0003735 ... Q5SHQ6 36316410
    42768 8cvl:14 (2.3) BS03 MG ? GO:0003735 ... Q5SJE1 36316410
    42769 8cvl:15 (2.3) BS02 MG ? GO:0003735 ... P80339 36316410
    42770 8cvl:16 (2.3) BS02 MG ? GO:0000049 ... P35871 36316410
    42771 8cvl:17 (2.3) BS02 MG ? GO:0003735 ... P80340 36316410
    42772 8cvl:17 (2.3) BS03 MG ? GO:0003735 ... P80340 36316410
    42773 8cvl:18 (2.3) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    42774 8cvl:18 (2.3) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    42775 8cvl:18 (2.3) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    42776 8cvl:1D (2.3) BS03 MG ? GO:0002181 ... P60405 36316410
    42777 8cvl:1D (2.3) BS04 MG ? GO:0002181 ... P60405 36316410
    42778 8cvl:1D (2.3) BS05 MG ? GO:0002181 ... P60405 36316410
    42779 8cvl:1D (2.3) BS06 MG ? GO:0002181 ... P60405 36316410
    42780 8cvl:1D (2.3) BS07 MG ? GO:0002181 ... P60405 36316410
    42781 8cvl:1D (2.3) BS08 MG ? GO:0002181 ... P60405 36316410
    42782 8cvl:1D (2.3) BS09 MG ? GO:0002181 ... P60405 36316410
    42783 8cvl:1D (2.3) BS10 MG ? GO:0002181 ... P60405 36316410
    42784 8cvl:1D (2.3) BS11 MG ? GO:0002181 ... P60405 36316410
    42785 8cvl:1D (2.3) BS12 MG ? GO:0002181 ... P60405 36316410
    42786 8cvl:1E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    42787 8cvl:1E (2.3) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    42788 8cvl:1E (2.3) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    42789 8cvl:1E (2.3) BS05 MG ? GO:0003735 ... Q5SHN8 36316410
    42790 8cvl:1F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    42791 8cvl:1F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    42792 8cvl:1F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    42793 8cvl:1F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    42794 8cvl:1F (2.3) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    42795 8cvl:1F (2.3) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    42796 8cvl:1F (2.3) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    42797 8cvl:1F (2.3) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    42798 8cvl:1G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    42799 8cvl:1G (2.3) BS05 MG ? GO:0000049 ... Q5SHQ0 36316410
    42800 8cvl:1N (2.3) BS02 MG ? GO:0003729 ... P60488 36316410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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