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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42401 8cq7:j (3.2) BS04 MG N/A N/A A0A8H6F1X9 N/A
    42402 8cq7:k (3.2) BS02 MG N/A N/A Q59LS1 N/A
    42403 8cq7:k (3.2) BS03 MG N/A N/A Q59LS1 N/A
    42404 8cq7:k (3.2) BS04 MG N/A N/A Q59LS1 N/A
    42405 8cq7:k (3.2) BS05 MG N/A N/A Q59LS1 N/A
    42406 8cq7:k (3.2) BS06 MG N/A N/A Q59LS1 N/A
    42407 8cq7:r (3.2) BS03 MG N/A N/A Q5AIB8 N/A
    42408 8cq7:v (3.2) BS03 MG N/A N/A Q5A6R1 N/A
    42409 8cq7:v (3.2) BS04 MG N/A N/A Q5A6R1 N/A
    42410 8cq7:v (3.2) BS05 MG N/A N/A Q5A6R1 N/A
    42411 8cq7:w (3.2) BS02 MG N/A N/A A0A8H6BZ56 N/A
    42412 8cq7:x (3.2) BS03 MG N/A N/A A0A8H6BUG0 N/A
    42413 8cq7:x (3.2) BS04 MG N/A N/A A0A8H6BUG0 N/A
    42414 8cq7:y (3.2) BS02 MG N/A N/A A0A8H6C4Y1 N/A
    42415 8cq7:y (3.2) BS03 MG N/A N/A A0A8H6C4Y1 N/A
    42416 8cq7:y (3.2) BS04 MG N/A N/A A0A8H6C4Y1 N/A
    42417 8cq7:z (3.2) BS03 MG N/A N/A A0A1D8PK40 N/A
    42418 8cqb:A (3.7) BS03 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 N/A
    42419 8cqb:B (3.7) BS03 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 N/A
    42420 8cqw:2 (3.05) BS03 MG N/A N/A A0A8H6F1C8 N/A
    42421 8cqw:AB (3.05) BS02 MG N/A N/A A0A8H6BVY8 N/A
    42422 8cqw:AE (3.05) BS02 MG N/A N/A A0A8H6F1M1 N/A
    42423 8cqw:AF (3.05) BS02 MG N/A N/A O94008 N/A
    42424 8cqw:AG (3.05) BS02 MG N/A N/A A0A8H6BW57 N/A
    42425 8cqw:AG (3.05) BS03 MG N/A N/A A0A8H6BW57 N/A
    42426 8cqw:AH (3.05) BS03 MG N/A N/A A0A8H6F171 N/A
    42427 8cqw:AM (3.05) BS03 MG N/A N/A Q96W55 N/A
    42428 8cqw:AP (3.05) BS04 MG N/A N/A A0A8H6BR69 N/A
    42429 8cqw:AR (3.05) BS02 MG N/A N/A A0A8H6C3E7 N/A
    42430 8cqw:AW (3.05) BS02 MG N/A N/A A0A8H6F1X9 N/A
    42431 8cqw:AW (3.05) BS03 MG N/A N/A A0A8H6F1X9 N/A
    42432 8cqw:AZ (3.05) BS03 MG N/A N/A G1UAA6 N/A
    42433 8cqw:BE (3.05) BS03 MG N/A N/A Q5AIB8 N/A
    42434 8cqw:BJ (3.05) BS02 MG N/A N/A A0A8H6BZ56 N/A
    42435 8cqw:BQ (3.05) BS02 MG N/A N/A A0A8H6C444 N/A
    42436 8cqw:BV (3.05) BS02 MG N/A N/A A0A8H6BVY8 N/A
    42437 8cqw:BZ (3.05) BS02 MG N/A N/A O94008 N/A
    42438 8cqw:BZ (3.05) BS03 MG N/A N/A O94008 N/A
    42439 8cqw:DB (3.05) BS02 MG N/A N/A A0A8H6F0V4 N/A
    42440 8cqw:DC (3.05) BS02 MG N/A N/A A0A1D8PK22 N/A
    42441 8cqw:DG (3.05) BS02 MG N/A N/A A0A8H6C5L4 N/A
    42442 8cqw:E (3.05) BS02 MG N/A N/A A0A8H6BZ90 N/A
    42443 8cqw:G (3.05) BS02 MG N/A N/A A0A1D8PCI6 N/A
    42444 8cqw:H (3.05) BS02 MG N/A N/A A0A8H6BS29 N/A
    42445 8cqw:J (3.05) BS02 MG N/A N/A A0A8H6C655 N/A
    42446 8cqw:K (3.05) BS03 MG N/A N/A A0A8H6F0S0 N/A
    42447 8cqw:Q (3.05) BS02 MG N/A N/A A0A8H6F0V4 N/A
    42448 8cqw:R (3.05) BS03 MG N/A N/A A0A1D8PK22 N/A
    42449 8cqw:Y (3.05) BS02 MG N/A N/A A0A8H6F0N4 N/A
    42450 8cqw:Z (3.05) BS02 MG N/A N/A A0A8H6F0V0 N/A
    42451 8cqw:i (3.05) BS03 MG N/A N/A A0A1D8PK71 N/A
    42452 8cqw:j (3.05) BS03 MG N/A N/A A0A8H6F1X9 N/A
    42453 8cqw:k (3.05) BS02 MG N/A N/A Q59LS1 N/A
    42454 8cqw:k (3.05) BS03 MG N/A N/A Q59LS1 N/A
    42455 8cqw:k (3.05) BS04 MG N/A N/A Q59LS1 N/A
    42456 8cqw:r (3.05) BS03 MG N/A N/A Q5AIB8 N/A
    42457 8cqw:r (3.05) BS04 MG N/A N/A Q5AIB8 N/A
    42458 8cqw:v (3.05) BS03 MG N/A N/A Q5A6R1 N/A
    42459 8cqw:v (3.05) BS04 MG N/A N/A Q5A6R1 N/A
    42460 8cqw:w (3.05) BS02 MG N/A N/A A0A8H6BZ56 N/A
    42461 8cqw:x (3.05) BS03 MG N/A N/A A0A8H6BUG0 N/A
    42462 8cqw:x (3.05) BS04 MG N/A N/A A0A8H6BUG0 N/A
    42463 8cqw:z (3.05) BS03 MG N/A N/A A0A1D8PK40 N/A
    42464 8cqx:A (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    42465 8cqx:B (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    42466 8cqx:C (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    42467 8cre:AB (3.0) BS02 MG N/A N/A A0A8H6BVY8 N/A
    42468 8cre:AE (3.0) BS02 MG N/A N/A A0A8H6F1M1 N/A
    42469 8cre:AF (3.0) BS02 MG N/A N/A O94008 N/A
    42470 8cre:AG (3.0) BS02 MG N/A N/A A0A8H6BW57 N/A
    42471 8cre:AG (3.0) BS03 MG N/A N/A A0A8H6BW57 N/A
    42472 8cre:AH (3.0) BS02 MG N/A N/A A0A8H6F171 N/A
    42473 8cre:AH (3.0) BS04 MG N/A N/A A0A8H6F171 N/A
    42474 8cre:AM (3.0) BS03 MG N/A N/A Q96W55 N/A
    42475 8cre:AP (3.0) BS04 MG N/A N/A A0A8H6BR69 N/A
    42476 8cre:AW (3.0) BS02 MG N/A N/A A0A8H6F1X9 N/A
    42477 8cre:AW (3.0) BS03 MG N/A N/A A0A8H6F1X9 N/A
    42478 8cre:AW (3.0) BS04 MG N/A N/A A0A8H6F1X9 N/A
    42479 8cre:AZ (3.0) BS03 MG N/A N/A G1UAA6 N/A
    42480 8cre:BB (3.0) BS03 MG N/A N/A A0A8H6BVN2 N/A
    42481 8cre:BE (3.0) BS03 MG N/A N/A Q5AIB8 N/A
    42482 8cre:BJ (3.0) BS02 MG N/A N/A A0A8H6BZ56 N/A
    42483 8cre:BQ (3.0) BS02 MG N/A N/A A0A8H6C444 N/A
    42484 8cre:BZ (3.0) BS02 MG N/A N/A O94008 N/A
    42485 8cre:DB (3.0) BS02 MG N/A N/A A0A8H6F0V4 N/A
    42486 8cre:DC (3.0) BS02 MG N/A N/A A0A1D8PK22 N/A
    42487 8cre:DG (3.0) BS02 MG N/A N/A A0A8H6C5L4 N/A
    42488 8cre:DQ (3.0) BS02 MG N/A N/A A0A1D8PTR4 N/A
    42489 8cre:G (3.0) BS02 MG N/A N/A A0A1D8PCI6 N/A
    42490 8cre:J (3.0) BS02 MG N/A N/A A0A8H6C655 N/A
    42491 8cre:K (3.0) BS03 MG N/A N/A A0A8H6F0S0 N/A
    42492 8cre:Q (3.0) BS02 MG N/A N/A A0A8H6F0V4 N/A
    42493 8cre:R (3.0) BS03 MG N/A N/A A0A1D8PK22 N/A
    42494 8cre:V (3.0) BS02 MG N/A N/A A0A8H6C5L4 N/A
    42495 8cre:Y (3.0) BS02 MG N/A N/A A0A8H6F0N4 N/A
    42496 8cre:i (3.0) BS03 MG N/A N/A A0A1D8PK71 N/A
    42497 8cre:j (3.0) BS03 MG N/A N/A A0A8H6F1X9 N/A
    42498 8cre:k (3.0) BS02 MG N/A N/A Q59LS1 N/A
    42499 8cre:k (3.0) BS03 MG N/A N/A Q59LS1 N/A
    42500 8cre:k (3.0) BS04 MG N/A N/A Q59LS1 N/A
    42501 8cre:r (3.0) BS03 MG N/A N/A Q5AIB8 N/A
    42502 8cre:r (3.0) BS04 MG N/A N/A Q5AIB8 N/A
    42503 8cre:v (3.0) BS03 MG N/A N/A Q5A6R1 N/A
    42504 8cre:v (3.0) BS04 MG N/A N/A Q5A6R1 N/A
    42505 8cre:w (3.0) BS02 MG N/A N/A A0A8H6BZ56 N/A
    42506 8cre:x (3.0) BS03 MG N/A N/A A0A8H6BUG0 N/A
    42507 8cre:x (3.0) BS04 MG N/A N/A A0A8H6BUG0 N/A
    42508 8cre:z (3.0) BS03 MG N/A N/A A0A1D8PK40 N/A
    42509 8cro:A (3.1) BS05 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    42510 8crx:1 (2.78) BS02 MG ? GO:0003735 ... A0A2B7IDI8 36864821
    42511 8crx:c (2.78) BS02 MG ? GO:0002181 ... A0A2B7JMV5 36864821
    42512 8crx:k (2.78) BS02 MG ? GO:0003735 ... A0A2B7IUA0 36864821
    42513 8csp:B (2.66) BS03 MG ? GO:0003735 ... Q9Y399 36482135
    42514 8csq:B (2.54) BS03 MG ? GO:0003735 ... Q9Y399 36482135
    42515 8csr:B (2.54) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    42516 8css:B (2.36) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    42517 8cst:B (2.85) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    42518 8csu:B (3.03) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    42519 8csz:D (3.2) BS04 MG N/A N/A N/A 35617371
    42520 8csz:D (3.2) BS05 MG N/A N/A N/A 35617371
    42521 8cvj:10 (2.4) BS04 MG ? GO:0003735 ... P60493 36316410
    42522 8cvj:10 (2.4) BS05 MG ? GO:0003735 ... P60493 36316410
    42523 8cvj:10 (2.4) BS06 MG ? GO:0003735 ... P60493 36316410
    42524 8cvj:11 (2.4) BS03 MG ? GO:0003735 ... P60494 36316410
    42525 8cvj:11 (2.4) BS04 MG ? GO:0003735 ... P60494 36316410
    42526 8cvj:12 (2.4) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    42527 8cvj:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    42528 8cvj:15 (2.4) BS02 MG ? GO:0003735 ... P80339 36316410
    42529 8cvj:15 (2.4) BS03 MG ? GO:0003735 ... P80339 36316410
    42530 8cvj:16 (2.4) BS02 MG ? GO:0000049 ... P35871 36316410
    42531 8cvj:16 (2.4) BS03 MG ? GO:0000049 ... P35871 36316410
    42532 8cvj:17 (2.4) BS02 MG ? GO:0003735 ... P80340 36316410
    42533 8cvj:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    42534 8cvj:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    42535 8cvj:18 (2.4) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    42536 8cvj:1D (2.4) BS03 MG ? GO:0002181 ... P60405 36316410
    42537 8cvj:1D (2.4) BS04 MG ? GO:0002181 ... P60405 36316410
    42538 8cvj:1D (2.4) BS05 MG ? GO:0002181 ... P60405 36316410
    42539 8cvj:1D (2.4) BS06 MG ? GO:0002181 ... P60405 36316410
    42540 8cvj:1D (2.4) BS07 MG ? GO:0002181 ... P60405 36316410
    42541 8cvj:1D (2.4) BS08 MG ? GO:0002181 ... P60405 36316410
    42542 8cvj:1D (2.4) BS09 MG ? GO:0002181 ... P60405 36316410
    42543 8cvj:1D (2.4) BS10 MG ? GO:0002181 ... P60405 36316410
    42544 8cvj:1D (2.4) BS11 MG ? GO:0002181 ... P60405 36316410
    42545 8cvj:1D (2.4) BS12 MG ? GO:0002181 ... P60405 36316410
    42546 8cvj:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    42547 8cvj:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    42548 8cvj:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    42549 8cvj:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    42550 8cvj:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    42551 8cvj:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    42552 8cvj:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    42553 8cvj:1F (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    42554 8cvj:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    42555 8cvj:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    42556 8cvj:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    42557 8cvj:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 36316410
    42558 8cvj:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    42559 8cvj:1G (2.4) BS05 MG ? GO:0000049 ... Q5SHQ0 36316410
    42560 8cvj:1I (2.4) BS02 MG ? GO:0003735 ... Q5SLQ1 36316410
    42561 8cvj:1N (2.4) BS02 MG ? GO:0003729 ... P60488 36316410
    42562 8cvj:1N (2.4) BS03 MG ? GO:0003729 ... P60488 36316410
    42563 8cvj:1N (2.4) BS04 MG ? GO:0003729 ... P60488 36316410
    42564 8cvj:1O (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    42565 8cvj:1O (2.4) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    42566 8cvj:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    42567 8cvj:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    42568 8cvj:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    42569 8cvj:1P (2.4) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    42570 8cvj:1P (2.4) BS06 MG ? GO:0003735 ... Q5SHQ7 36316410
    42571 8cvj:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 36316410
    42572 8cvj:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 36316410
    42573 8cvj:1Q (2.4) BS07 MG ? GO:0000049 ... P60489 36316410
    42574 8cvj:1Q (2.4) BS08 MG ? GO:0000049 ... P60489 36316410
    42575 8cvj:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    42576 8cvj:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    42577 8cvj:1S (2.4) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    42578 8cvj:1S (2.4) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    42579 8cvj:1U (2.4) BS02 MG ? GO:0000027 ... P60491 36316410
    42580 8cvj:1U (2.4) BS03 MG ? GO:0000027 ... P60491 36316410
    42581 8cvj:1U (2.4) BS04 MG ? GO:0000027 ... P60491 36316410
    42582 8cvj:1U (2.4) BS05 MG ? GO:0000027 ... P60491 36316410
    42583 8cvj:1U (2.4) BS06 MG ? GO:0000027 ... P60491 36316410
    42584 8cvj:1U (2.4) BS07 MG ? GO:0000027 ... P60491 36316410
    42585 8cvj:1U (2.4) BS08 MG ? GO:0000027 ... P60491 36316410
    42586 8cvj:1U (2.4) BS09 MG ? GO:0000027 ... P60491 36316410
    42587 8cvj:1V (2.4) BS02 MG ? GO:0003723 ... P60492 36316410
    42588 8cvj:1V (2.4) BS03 MG ? GO:0003723 ... P60492 36316410
    42589 8cvj:1V (2.4) BS04 MG ? GO:0003723 ... P60492 36316410
    42590 8cvj:1V (2.4) BS05 MG ? GO:0003723 ... P60492 36316410
    42591 8cvj:1V (2.4) BS06 MG ? GO:0003723 ... P60492 36316410
    42592 8cvj:1V (2.4) BS07 MG ? GO:0003723 ... P60492 36316410
    42593 8cvj:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    42594 8cvj:1W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    42595 8cvj:1W (2.4) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    42596 8cvj:1X (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    42597 8cvj:1X (2.4) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    42598 8cvj:1X (2.4) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    42599 8cvj:1Y (2.4) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    42600 8cvj:1Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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