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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42201 8ckb:E369 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42202 8ckb:E378 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42203 8ckb:E386 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42204 8ckb:E395 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42205 8ckb:E404 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42206 8ckb:E418 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42207 8ckb:E427 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42208 8ckb:E436 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42209 8ckb:E440 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42210 8ckb:E449 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42211 8ckb:E458 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42212 8ckb:E471 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42213 8ckb:E480 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42214 8ckb:E489 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42215 8ckb:E491 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42216 8ckb:E492 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42217 8ckb:E493 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42218 8ckb:E494 (4.39) BS02 MG ? GO:0019028 ... A0A385DVU6 N/A
    42219 8ckb:E497 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42220 8ckb:E499 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42221 8ckb:E503 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42222 8ckb:E505 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42223 8ckb:E506 (4.39) BS02 MG ? GO:0019028 ... A0A385DVU6 N/A
    42224 8ckb:E507 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42225 8ckb:E508 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42226 8ckb:E509 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42227 8ckb:E512 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42228 8ckb:E513 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42229 8ckb:E515 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42230 8ckb:E517 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42231 8ckb:E530 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    42232 8ckb:H001 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42233 8ckb:H002 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42234 8ckb:H003 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42235 8ckb:H004 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42236 8ckb:H005 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42237 8ckb:H006 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42238 8ckb:H007 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42239 8ckb:H008 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42240 8ckb:H009 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42241 8ckb:H010 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42242 8ckb:H011 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42243 8ckb:H012 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    42244 8cku:Aa (3.11) BS04 MG ? GO:0003924 ... N/A 38030725
    42245 8cku:EE (3.11) BS03 MG ? GO:0002181 ... P0CX45 38030725
    42246 8clb:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    42247 8clb:C (3.0) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    42248 8clf:C (2.7) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    42249 8clf:D (2.7) BS02 MG ? GO:0000226 ... Q6B856 38042952
    42250 8clg:A (2.8) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    42251 8clg:C (2.8) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    42252 8cn4:A (1.67) BS01 MG 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    42253 8cng:A (2.1) BS01 MG 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    42254 8cnj:A (1.35) BS03 MG 3.6.5.2 GO:0003924 ... P01112 38297137
    42255 8cnj:B (1.35) BS03 MG 3.6.5.2 GO:0003924 ... P01112 38297137
    42256 8cnn:A (1.48) BS03 MG 3.6.5.2 GO:0003924 ... P01112 38297137
    42257 8cnr:A (1.45) BS01 MG N/A GO:0003824 ... N/A 37250035
    42258 8cns:A (1.36) BS01 MG N/A GO:0003824 ... N/A 37250035
    42259 8co5:A (2.42) BS02 MG 2.7.13.3 GO:0006355 ... Q7CY45 N/A
    42260 8cps:1 (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42261 8cps:2 (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42262 8cps:4 (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42263 8cps:A (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42264 8cps:B (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42265 8cps:E (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42266 8cps:F (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42267 8cps:H (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42268 8cps:I (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42269 8cps:K (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42270 8cps:O (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42271 8cps:P (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42272 8cps:S (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42273 8cps:U (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42274 8cps:X (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42275 8cps:Y (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42276 8cps:e (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42277 8cps:r (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42278 8cpt:1 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42279 8cpt:2 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42280 8cpt:4 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42281 8cpt:A (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42282 8cpt:B (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42283 8cpt:E (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42284 8cpt:F (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42285 8cpt:H (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42286 8cpt:I (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42287 8cpt:K (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42288 8cpt:O (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42289 8cpt:P (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42290 8cpt:S (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42291 8cpt:U (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42292 8cpt:X (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42293 8cpt:Y (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42294 8cpt:e (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42295 8cpt:r (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42296 8cpu:1 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42297 8cpu:2 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42298 8cpu:4 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42299 8cpu:A (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42300 8cpu:B (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42301 8cpu:E (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42302 8cpu:F (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42303 8cpu:H (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42304 8cpu:I (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42305 8cpu:K (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42306 8cpu:O (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42307 8cpu:P (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42308 8cpu:S (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42309 8cpu:U (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42310 8cpu:X (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42311 8cpu:Y (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42312 8cpu:e (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42313 8cpu:r (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42314 8cpw:1 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42315 8cpw:2 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42316 8cpw:4 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42317 8cpw:A (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42318 8cpw:B (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42319 8cpw:E (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42320 8cpw:F (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42321 8cpw:H (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42322 8cpw:I (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42323 8cpw:K (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42324 8cpw:O (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42325 8cpw:P (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42326 8cpw:S (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42327 8cpw:U (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42328 8cpw:X (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42329 8cpw:Y (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42330 8cpw:e (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42331 8cpw:r (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42332 8cpx:1 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42333 8cpx:2 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42334 8cpx:4 (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42335 8cpx:A (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42336 8cpx:B (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42337 8cpx:E (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42338 8cpx:F (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42339 8cpx:H (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42340 8cpx:I (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42341 8cpx:K (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42342 8cpx:O (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42343 8cpx:P (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42344 8cpx:S (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42345 8cpx:U (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42346 8cpx:X (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42347 8cpx:Y (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42348 8cpx:e (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42349 8cpx:r (1.76) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    42350 8cq7:AB (3.2) BS02 MG N/A N/A A0A8H6BVY8 N/A
    42351 8cq7:AD (3.2) BS02 MG N/A N/A A0A1D8PM75 N/A
    42352 8cq7:AE (3.2) BS02 MG N/A N/A A0A8H6F1M1 N/A
    42353 8cq7:AF (3.2) BS02 MG N/A N/A O94008 N/A
    42354 8cq7:AF (3.2) BS03 MG N/A N/A O94008 N/A
    42355 8cq7:AG (3.2) BS02 MG N/A N/A A0A8H6BW57 N/A
    42356 8cq7:AG (3.2) BS03 MG N/A N/A A0A8H6BW57 N/A
    42357 8cq7:AH (3.2) BS02 MG N/A N/A A0A8H6F171 N/A
    42358 8cq7:AI (3.2) BS03 MG N/A N/A A0A8H6F6B7 N/A
    42359 8cq7:AJ (3.2) BS02 MG N/A N/A P47834 N/A
    42360 8cq7:AM (3.2) BS03 MG N/A N/A Q96W55 N/A
    42361 8cq7:AP (3.2) BS03 MG N/A N/A A0A8H6BR69 N/A
    42362 8cq7:AW (3.2) BS02 MG N/A N/A A0A8H6F1X9 N/A
    42363 8cq7:AW (3.2) BS03 MG N/A N/A A0A8H6F1X9 N/A
    42364 8cq7:AZ (3.2) BS03 MG N/A N/A G1UAA6 N/A
    42365 8cq7:BB (3.2) BS03 MG N/A N/A A0A8H6BVN2 N/A
    42366 8cq7:BE (3.2) BS03 MG N/A N/A Q5AIB8 N/A
    42367 8cq7:BJ (3.2) BS02 MG N/A N/A A0A8H6BZ56 N/A
    42368 8cq7:BJ (3.2) BS03 MG N/A N/A A0A8H6BZ56 N/A
    42369 8cq7:BK (3.2) BS03 MG N/A N/A A0A8H6BUG0 N/A
    42370 8cq7:BQ (3.2) BS02 MG N/A N/A A0A8H6C444 N/A
    42371 8cq7:BS (3.2) BS03 MG N/A N/A A0A8H6F6A1 N/A
    42372 8cq7:BS (3.2) BS04 MG N/A N/A A0A8H6F6A1 N/A
    42373 8cq7:BV (3.2) BS02 MG N/A N/A A0A8H6BVY8 N/A
    42374 8cq7:BZ (3.2) BS02 MG N/A N/A O94008 N/A
    42375 8cq7:BZ (3.2) BS03 MG N/A N/A O94008 N/A
    42376 8cq7:BZ (3.2) BS04 MG N/A N/A O94008 N/A
    42377 8cq7:CA (3.2) BS02 MG N/A N/A A0A8H6BW57 N/A
    42378 8cq7:CQ (3.2) BS02 MG N/A N/A A0A8H6BYS1 N/A
    42379 8cq7:CW (3.2) BS02 MG N/A N/A A0A8H6F1X2 N/A
    42380 8cq7:CY (3.2) BS02 MG N/A N/A A0A1D8PN83 N/A
    42381 8cq7:DB (3.2) BS02 MG N/A N/A A0A8H6F0V4 N/A
    42382 8cq7:DC (3.2) BS02 MG N/A N/A A0A1D8PK22 N/A
    42383 8cq7:DG (3.2) BS02 MG N/A N/A A0A8H6C5L4 N/A
    42384 8cq7:DG (3.2) BS03 MG N/A N/A A0A8H6C5L4 N/A
    42385 8cq7:DJ (3.2) BS02 MG N/A N/A A0A8H6F0N4 N/A
    42386 8cq7:DJ (3.2) BS03 MG N/A N/A A0A8H6F0N4 N/A
    42387 8cq7:DQ (3.2) BS02 MG N/A N/A A0A1D8PTR4 N/A
    42388 8cq7:G (3.2) BS02 MG N/A N/A A0A1D8PCI6 N/A
    42389 8cq7:H (3.2) BS02 MG N/A N/A A0A8H6BS29 N/A
    42390 8cq7:I (3.2) BS02 MG N/A N/A A0A8H6BZ37 N/A
    42391 8cq7:J (3.2) BS02 MG N/A N/A A0A8H6C655 N/A
    42392 8cq7:K (3.2) BS03 MG N/A N/A A0A8H6F0S0 N/A
    42393 8cq7:P0 (3.2) BS02 MG N/A N/A G1UA71 N/A
    42394 8cq7:Q (3.2) BS02 MG N/A N/A A0A8H6F0V4 N/A
    42395 8cq7:R (3.2) BS03 MG N/A N/A A0A1D8PK22 N/A
    42396 8cq7:Y (3.2) BS02 MG N/A N/A A0A8H6F0N4 N/A
    42397 8cq7:Z (3.2) BS02 MG N/A N/A A0A8H6F0V0 N/A
    42398 8cq7:c (3.2) BS03 MG N/A N/A A0A8H6BTS1 N/A
    42399 8cq7:i (3.2) BS03 MG N/A N/A A0A1D8PK71 N/A
    42400 8cq7:j (3.2) BS03 MG N/A N/A A0A8H6F1X9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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