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BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41201 7ye2:D (3.8) BS05 MG 2.7.7.6 GO:0000287 ... A0A0H3C4W8 N/A
    41202 7yf6:B (2.01) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 36262395
    41203 7yfq:A (3.2) BS03 MG ? GO:0003676 ... D5MRY8 38658622
    41204 7yfq:A (3.2) BS04 MG ? GO:0003676 ... D5MRY8 38658622
    41205 7yfx:A (3.4) BS02 MG 3.1.26.- GO:0003676 ... Q8TC59 38658622
    41206 7yfx:A (3.4) BS03 MG 3.1.26.- GO:0003676 ... Q8TC59 38658622
    41207 7yfy:A (3.4) BS03 MG 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    41208 7yfy:A (3.4) BS04 MG 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    41209 7yg6:A (3.2) BS02 MG ? GO:0003676 ... D5MRY8 38658622
    41210 7yg6:A (3.2) BS03 MG ? GO:0003676 ... D5MRY8 38658622
    41211 7ygn:A (3.0) BS02 MG 3.1.26.- GO:0003676 ... Q8CDG1 38658622
    41212 7yh5:A (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    41213 7yh5:B (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    41214 7yh5:C (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    41215 7yh5:E (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    41216 7yh5:F (2.7) BS01 MG 3.6.1.8 N/A P96379 36937295
    41217 7yhn:A (2.6) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    41218 7yhn:C (2.6) BS01 MG 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    41219 7yhn:C (2.6) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 36511661
    41220 7yia:A (2.428) BS01 MG 3.1.-.- GO:0000166 ... P0DUD5 36796558
    41221 7yiv:A (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41222 7yiv:B (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41223 7yiv:C (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41224 7yiv:D (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41225 7yiv:E (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41226 7yiv:F (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41227 7yiv:G (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41228 7yiv:H (3.18) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41229 7yiw:A (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41230 7yiw:B (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41231 7yiw:C (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41232 7yiw:D (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41233 7yiw:E (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41234 7yiw:F (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41235 7yiw:G (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41236 7yiw:H (2.89) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41237 7yix:A (2.96) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41238 7yix:B (2.96) BS01 MG 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    41239 7yke:A (1.88) BS04 MG 4.2.2.20 GO:0003824 ... P59807 36478634
    41240 7yla:6 (2.52) BS03 MG ? GO:0003924 ... P25519 N/A
    41241 7yll:A (2.60001) BS01 MG 2.7.7.7 GO:0000287 ... P58965 37683741
    41242 7ylw:D (3.39) BS02 MG ? GO:0005524 ... P39078 36921056
    41243 7ylw:d (3.39) BS02 MG ? GO:0005524 ... P39078 36921056
    41244 7ylx:D (3.2) BS02 MG ? GO:0005524 ... P39078 36921056
    41245 7ylx:d (3.2) BS02 MG ? GO:0005524 ... P39078 36921056
    41246 7yly:D (3.05) BS02 MG ? GO:0005524 ... P39078 36921056
    41247 7yly:d (3.05) BS02 MG ? GO:0005524 ... P39078 36921056
    41248 7ynz:A (3.5) BS01 MG ? GO:0005216 ... Q12791 N/A
    41249 7ynz:C (3.5) BS02 MG ? GO:0005216 ... Q12791 N/A
    41250 7ynz:G (3.5) BS02 MG ? GO:0005216 ... Q12791 N/A
    41251 7yo1:A (3.6) BS01 MG ? GO:0005216 ... Q12791 N/A
    41252 7yo1:G (3.6) BS02 MG ? GO:0005216 ... Q12791 N/A
    41253 7yo3:A (3.1) BS01 MG ? GO:0005216 ... Q12791 N/A
    41254 7ypa:D (3.05) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    41255 7ypb:D (3.48) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    41256 7ypy:A (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    41257 7ypy:N (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    41258 7ypz:A (2.15) BS01 MG 3.6.5.- GO:0000054 ... P62826 36622814
    41259 7yq2:J (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    41260 7yq2:j (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    41261 7yq7:J (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    41262 7yq7:j (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    41263 7yq8:A (3.9) BS03 MG 5.6.2.2 GO:0000712 ... Q02880 38097570
    41264 7yq8:B (3.9) BS03 MG 5.6.2.2 GO:0000712 ... Q02880 38097570
    41265 7yqa:A (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    41266 7yqa:B (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    41267 7yqa:C (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    41268 7yqa:D (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    41269 7yse:A (2.907) BS03 MG 6.1.1.14 GO:0000166 ... P00960 36753552
    41270 7yse:B (2.907) BS03 MG 6.1.1.14 GO:0000166 ... P00960 36753552
    41271 7yua:A (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    41272 7yua:A (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    41273 7yua:A (2.5) BS04 MG ? GO:0046872 ... G8HX37 N/A
    41274 7yua:B (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    41275 7yua:B (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    41276 7yua:B (2.5) BS04 MG ? GO:0046872 ... G8HX37 N/A
    41277 7yua:C (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    41278 7yua:D (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    41279 7yua:D (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    41280 7yxh:A (2.3) BS02 MG 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    41281 7yxl:B (2.2) BS02 MG 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    41282 7yxm:B (1.7) BS01 MG ? GO:0016746 ... Q39VG1 35313080
    41283 7yy3:A (1.535) BS02 MG 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    41284 7yy3:B (1.535) BS02 MG 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    41285 7yy3:C (1.535) BS02 MG 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    41286 7yzn:A (1.7) BS01 MG ? GO:0003743 ... Q9UZK7 35694843
    41287 7yzo:C (3.4) BS04 MG ? GO:0000014 ... P13458 35987200
    41288 7yzo:D (3.4) BS05 MG ? GO:0000014 ... P13458 35987200
    41289 7yzp:C (4.0) BS03 MG ? GO:0000014 ... P13458 35987200
    41290 7yzr:A (6.92) BS01 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    41291 7yzr:C (6.92) BS01 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    41292 7yzz:A (1.29) BS03 MG ? GO:0004035 ... Q93P54 36194497
    41293 7yzz:A (1.29) BS06 MG ? GO:0004035 ... Q93P54 36194497
    41294 7yzz:B (1.29) BS03 MG ? GO:0004035 ... Q93P54 36194497
    41295 7yzz:B (1.29) BS05 MG ? GO:0004035 ... Q93P54 36194497
    41296 7z00:B (2.6) BS03 MG ? GO:0004035 ... Q93P54 36194497
    41297 7z02:A (2.36) BS02 MG 3.6.5.- GO:0000226 ... P81947 35290733
    41298 7z03:C (3.7) BS03 MG ? GO:0000014 ... P13458 35987200
    41299 7z03:D (3.7) BS05 MG ? GO:0000014 ... P13458 35987200
    41300 7z04:A (7.5) BS02 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    41301 7z04:C (7.5) BS02 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    41302 7z0h:A (2.6) BS03 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41303 7z0h:A (2.6) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41304 7z0h:I (2.6) BS01 MG ? GO:0000428 ... Q04307 36977686
    41305 7z15:I (1.93) BS02 MG ? GO:0000166 ... P16678 36813778
    41306 7z15:J (1.93) BS03 MG ? GO:0000166 ... P16678 36813778
    41307 7z18:I (1.98) BS02 MG ? GO:0000166 ... P16678 36813778
    41308 7z18:J (1.98) BS03 MG ? GO:0000166 ... P16678 36813778
    41309 7z1l:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... P04051 36070694
    41310 7z1m:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04051 36070694
    41311 7z1o:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... P04051 36070694
    41312 7z2b:K (3.3) BS02 MG ? GO:0003777 ... A0A509AB64 36384964
    41313 7z2z:A (3.07) BS07 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41314 7z2z:A (3.07) BS09 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41315 7z2z:I (3.07) BS01 MG ? GO:0000428 ... Q04307 36977686
    41316 7z30:A (2.9) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41317 7z30:A (2.9) BS05 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41318 7z30:I (2.9) BS01 MG ? GO:0000428 ... Q04307 36977686
    41319 7z31:A (2.76) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    41320 7z34:b (3.8) BS02 MG ? GO:0000054 ... Q02892 36097293
    41321 7z3n:LB (3.2) BS02 MG ? GO:0003723 ... G0RXW1 37081320
    41322 7z3n:LP (3.2) BS03 MG ? GO:0002181 ... G0SGY1 37081320
    41323 7z3n:SO (3.2) BS02 MG ? GO:0000028 ... G0SFL1 37081320
    41324 7z3o:LB (3.3) BS02 MG ? GO:0003723 ... G0RXW1 37081320
    41325 7z4j:B (2.99) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 36002571
    41326 7z4j:B (2.99) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 36002571
    41327 7z4j:B (2.99) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 36002571
    41328 7z4m:A (1.9) BS01 MG 2.7.1.40 GO:0000287 ... C6KTA4 35998635
    41329 7z4n:A (1.8) BS01 MG 2.7.1.40 GO:0000287 ... C6KTA4 35998635
    41330 7z4o:BBB (3.412) BS02 MG 2.7.7.48 GO:0000166 ... A0A024E3M6 35605026
    41331 7z4o:EEE (3.412) BS02 MG 2.7.7.48 GO:0000166 ... A0A024E3M6 35605026
    41332 7z4r:A (2.0) BS01 MG 2.7.1.40 GO:0000287 ... C6KTA4 35998635
    41333 7z5j:A (2.58) BS03 MG ? GO:0005737 ... P84308 35779405
    41334 7z5j:C (2.58) BS03 MG ? GO:0005737 ... P84308 35779405
    41335 7z5j:E (2.58) BS04 MG ? GO:0005737 ... P84308 35779405
    41336 7z5j:G (2.58) BS04 MG ? GO:0005737 ... P84308 35779405
    41337 7z5j:I (2.58) BS03 MG ? GO:0005737 ... P84308 35779405
    41338 7z5j:K (2.58) BS04 MG ? GO:0005737 ... P84308 35779405
    41339 7z67:A (2.65) BS02 MG 3.6.1.1 GO:0005524 ... Q9C9B9 N/A
    41340 7z8g:A (3.52) BS03 MG ? GO:0003723 ... Q14204 36071160
    41341 7z8h:A (3.41) BS04 MG ? GO:0003723 ... Q14204 36071160
    41342 7z8m:I (3.37) BS03 MG ? N/A F2Z5G5 36071160
    41343 7z8q:d (4.08) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    41344 7zah:7 (2.7) BS05 MG ? GO:0003743 ... Q9UZK7 35694843
    41345 7zak:A (1.62) BS02 MG N/A GO:0006955 ... N/A 37023751
    41346 7zak:B (1.62) BS02 MG N/A GO:0006955 ... N/A 37023751
    41347 7zb2:CCC (1.94) BS01 MG N/A GO:0004252 ... N/A N/A
    41348 7zb2:CCC (1.94) BS02 MG N/A GO:0004252 ... N/A N/A
    41349 7zb2:FFF (1.94) BS01 MG N/A GO:0004252 ... N/A N/A
    41350 7zbp:A (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    41351 7zbp:B (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    41352 7zbp:C (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    41353 7zbp:D (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    41354 7zcl:A (1.95) BS02 MG N/A GO:0004601 ... N/A 35624755
    41355 7zcl:B (1.95) BS01 MG N/A GO:0004601 ... N/A 35624755
    41356 7zda:C (3.17) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41357 7zda:D (3.17) BS01 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41358 7zdb:C (3.35) BS02 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41359 7zdc:D (3.13) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41360 7zdf:D (2.94) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41361 7zdk:C (3.01) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41362 7zdk:D (3.01) BS01 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41363 7zdl:C (3.35) BS02 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41364 7zdl:D (3.35) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41365 7zdt:C (2.71) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41366 7zdu:C (2.98) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41367 7zdu:D (2.98) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41368 7zdw:D (3.35) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41369 7ze5:C (2.94) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    41370 7ze5:D (2.94) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41371 7zec:D (3.05) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    41372 7zee:A (1.36) BS01 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41373 7zeg:A (1.56) BS02 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41374 7zeg:B (1.56) BS02 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41375 7zeh:A (1.5) BS03 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41376 7zeh:B (1.5) BS03 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41377 7zeh:C (1.5) BS03 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41378 7zeh:D (1.5) BS03 MG 3.1.3.5
    3.1.3.91    		 GO:0000166 ... Q969T7 35631380
    41379 7zel:A (2.8) BS02 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    41380 7zel:B (2.8) BS02 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    41381 7zes:A (3.1) BS02 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    41382 7zes:B (3.1) BS03 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    41383 7zf2:D (3.86) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 36717560
    41384 7zjw:LD (2.8) BS03 MG ? GO:0002181 ... A0A8B8VPA8 35709277
    41385 7zjw:Lj (2.8) BS02 MG ? GO:0003735 ... G1TXG5 35709277
    41386 7zk4:A (2.6) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41387 7zk4:A (2.6) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41388 7zk5:A (2.6) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41389 7zk5:A (2.6) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41390 7zk6:A (3.1) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41391 7zk6:A (3.1) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41392 7zk8:A (3.0) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41393 7zk8:A (3.0) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41394 7zka:A (2.9) BS03 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41395 7zka:A (2.9) BS05 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    41396 7zki:7 (3.6) BS04 MG ? GO:0003743 ... Q9UZK7 35694843
    41397 7zmf:A (2.21) BS01 MG ? N/A C0ZGQ6 36129979
    41398 7zmf:B (2.21) BS01 MG ? N/A C0ZGQ6 36129979
    41399 7zmw:A (1.8) BS02 MG ? GO:0000122 ... P31947 36425501
    41400 7znm:A (2.01) BS02 MG N/A GO:0004601 ... N/A 36374006
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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