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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40201 7u2j:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 35766409
    40202 7u2j:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 35766409
    40203 7u2j:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 35766409
    40204 7u2j:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 35766409
    40205 7u2j:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 35766409
    40206 7u2j:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 35766409
    40207 7u2j:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 35766409
    40208 7u2j:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 35766409
    40209 7u2j:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 35766409
    40210 7u2j:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 35766409
    40211 7u2j:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 35766409
    40212 7u2j:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 35766409
    40213 7u2j:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 35766409
    40214 7u2j:1I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 35766409
    40215 7u2j:1N (2.55) BS02 MG ? GO:0003729 ... P60488 35766409
    40216 7u2j:1N (2.55) BS03 MG ? GO:0003729 ... P60488 35766409
    40217 7u2j:1N (2.55) BS04 MG ? GO:0003729 ... P60488 35766409
    40218 7u2j:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 35766409
    40219 7u2j:1O (2.55) BS04 MG ? GO:0003735 ... Q5SHP8 35766409
    40220 7u2j:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 35766409
    40221 7u2j:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 35766409
    40222 7u2j:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 35766409
    40223 7u2j:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 35766409
    40224 7u2j:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 35766409
    40225 7u2j:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 35766409
    40226 7u2j:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 35766409
    40227 7u2j:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 35766409
    40228 7u2j:1Q (2.55) BS09 MG ? GO:0000049 ... P60489 35766409
    40229 7u2j:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 35766409
    40230 7u2j:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 35766409
    40231 7u2j:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 35766409
    40232 7u2j:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 35766409
    40233 7u2j:1T (2.55) BS03 MG ? GO:0003735 ... P60490 35766409
    40234 7u2j:1U (2.55) BS02 MG ? GO:0000027 ... P60491 35766409
    40235 7u2j:1U (2.55) BS03 MG ? GO:0000027 ... P60491 35766409
    40236 7u2j:1U (2.55) BS04 MG ? GO:0000027 ... P60491 35766409
    40237 7u2j:1U (2.55) BS05 MG ? GO:0000027 ... P60491 35766409
    40238 7u2j:1U (2.55) BS06 MG ? GO:0000027 ... P60491 35766409
    40239 7u2j:1U (2.55) BS07 MG ? GO:0000027 ... P60491 35766409
    40240 7u2j:1U (2.55) BS08 MG ? GO:0000027 ... P60491 35766409
    40241 7u2j:1U (2.55) BS09 MG ? GO:0000027 ... P60491 35766409
    40242 7u2j:1U (2.55) BS10 MG ? GO:0000027 ... P60491 35766409
    40243 7u2j:1V (2.55) BS02 MG ? GO:0003723 ... P60492 35766409
    40244 7u2j:1V (2.55) BS03 MG ? GO:0003723 ... P60492 35766409
    40245 7u2j:1V (2.55) BS04 MG ? GO:0003723 ... P60492 35766409
    40246 7u2j:1V (2.55) BS05 MG ? GO:0003723 ... P60492 35766409
    40247 7u2j:1V (2.55) BS06 MG ? GO:0003723 ... P60492 35766409
    40248 7u2j:1V (2.55) BS07 MG ? GO:0003723 ... P60492 35766409
    40249 7u2j:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 35766409
    40250 7u2j:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 35766409
    40251 7u2j:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 35766409
    40252 7u2j:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 35766409
    40253 7u2j:1W (2.55) BS06 MG ? GO:0003735 ... Q5SHP3 35766409
    40254 7u2j:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 35766409
    40255 7u2j:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 35766409
    40256 7u2j:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 35766409
    40257 7u2j:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 35766409
    40258 7u2j:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 35766409
    40259 7u2j:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 35766409
    40260 7u2j:1b (2.55) BS02 MG ? GO:0003735 ... P80371 35766409
    40261 7u2j:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 35766409
    40262 7u2j:1e (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 35766409
    40263 7u2j:1k (2.55) BS02 MG ? GO:0003735 ... P80376 35766409
    40264 7u2j:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 35766409
    40265 7u2j:1m (2.55) BS05 MG ? GO:0000049 ... P80377 35766409
    40266 7u2j:1n (2.55) BS02 MG ? GO:0003735 ... P0DOY6 35766409
    40267 7u2j:23 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 35766409
    40268 7u2j:25 (2.55) BS02 MG ? GO:0003735 ... P80339 35766409
    40269 7u2j:25 (2.55) BS03 MG ? GO:0003735 ... P80339 35766409
    40270 7u2j:25 (2.55) BS04 MG ? GO:0003735 ... P80339 35766409
    40271 7u2j:27 (2.55) BS02 MG ? GO:0003735 ... P80340 35766409
    40272 7u2j:2D (2.55) BS03 MG ? GO:0002181 ... P60405 35766409
    40273 7u2j:2D (2.55) BS04 MG ? GO:0002181 ... P60405 35766409
    40274 7u2j:2D (2.55) BS05 MG ? GO:0002181 ... P60405 35766409
    40275 7u2j:2D (2.55) BS06 MG ? GO:0002181 ... P60405 35766409
    40276 7u2j:2E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 35766409
    40277 7u2j:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 35766409
    40278 7u2j:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 35766409
    40279 7u2j:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 35766409
    40280 7u2j:2F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 35766409
    40281 7u2j:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 35766409
    40282 7u2j:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 35766409
    40283 7u2j:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 35766409
    40284 7u2j:2U (2.55) BS02 MG ? GO:0000027 ... P60491 35766409
    40285 7u2j:2V (2.55) BS02 MG ? GO:0003723 ... P60492 35766409
    40286 7u2j:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 35766409
    40287 7u2j:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 35766409
    40288 7u2j:2W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 35766409
    40289 7u2j:2d (2.55) BS02 MG ? GO:0003723 ... P80373 35766409
    40290 7u2j:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 35766409
    40291 7u2j:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 35766409
    40292 7u2j:2j (2.55) BS02 MG ? GO:0000049 ... Q5SHN7 35766409
    40293 7u2j:2k (2.55) BS02 MG ? GO:0003735 ... P80376 35766409
    40294 7u2j:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 35766409
    40295 7u2j:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 35766409
    40296 7u2j:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 35766409
    40297 7u2j:2q (2.55) BS03 MG ? GO:0003735 ... P0DOY7 35766409
    40298 7u4h:A (3.1) BS01 MG N/A GO:0008658 ... N/A N/A
    40299 7u4h:B (3.1) BS01 MG N/A GO:0008658 ... N/A N/A
    40300 7u66:A (3.1) BS01 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40301 7u66:B (3.1) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40302 7u66:C (3.1) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40303 7u66:D (3.1) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40304 7u66:E (3.1) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40305 7u66:F (3.1) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40306 7u67:A (2.5) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40307 7u67:B (2.5) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40308 7u67:C (2.5) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40309 7u67:D (2.5) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40310 7u67:E (2.5) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40311 7u67:F (2.5) BS02 MG 3.1.5.1 GO:0000287 ... P15723 36067314
    40312 7u6k:C (2.38) BS03 MG ? GO:0003677 ... P03856 37407546
    40313 7u77:A (1.58) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40314 7u77:A (1.58) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40315 7u78:A (1.61) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40316 7u78:A (1.61) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40317 7u79:A (1.69) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40318 7u79:A (1.69) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40319 7u7a:A (1.58) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40320 7u7a:A (1.58) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40321 7u7b:A (1.58) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40322 7u7b:A (1.58) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40323 7u7c:A (1.55) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40324 7u7c:A (1.55) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40325 7u7l:A (1.47) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40326 7u7o:C (2.97) BS03 MG ? GO:0003677 ... P03856 37407546
    40327 7u7s:A (1.6) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40328 7u7s:A (1.6) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40329 7u7t:A (1.55) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40330 7u7t:A (1.55) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40331 7u7u:A (1.54) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40332 7u7u:A (1.54) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40333 7u7v:A (1.65) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40334 7u7v:A (1.65) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40335 7u7w:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40336 7u7w:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40337 7u7x:A (1.65) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40338 7u7x:A (1.65) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    40339 7u9k:B (2.0) BS02 MG 6.3.2.4 GO:0003824 ... Q2FWH3 37948922
    40340 7ubm:D (3.13) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 35951650
    40341 7ubn:D (3.36) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 35951650
    40342 7uc3:A (1.442) BS01 MG ? N/A U2Q1B9 N/A
    40343 7ucj:FF (3.1) BS02 MG ? GO:0000028 ... G1TFM5 35679869
    40344 7ucj:g (3.1) BS02 MG ? GO:0003735 ... G1TXG5 35679869
    40345 7uck:A (2.8) BS03 MG ? GO:0002181 ... G1TT27 35679869
    40346 7uck:FF (2.8) BS02 MG ? GO:0000028 ... G1TFM5 35679869
    40347 7uck:LL (2.8) BS02 MG ? GO:0003735 ... G1TRM4 35679869
    40348 7uck:g (2.8) BS02 MG ? GO:0003735 ... G1TXG5 35679869
    40349 7udg:B (2.80007) BS01 MG ? N/A P05106 36113427
    40350 7udg:D (2.80007) BS01 MG ? N/A P05106 36113427
    40351 7ue0:B (2.74196) BS01 MG ? N/A P05106 36113427
    40352 7ue0:D (2.74196) BS01 MG ? N/A P05106 36113427
    40353 7uel:L (1.9) BS01 MG N/A N/A N/A 35867757
    40354 7ufx:C (2.8) BS03 MG ? GO:0003677 ... P03856 37407546
    40355 7ug6:m (2.9) BS03 MG ? GO:0000055 ... P53742 36536102
    40356 7ug7:LB (2.58) BS03 MG ? GO:0000027 ... P60422 35500116
    40357 7ug7:LB (2.58) BS04 MG ? GO:0000027 ... P60422 35500116
    40358 7ug7:LB (2.58) BS05 MG ? GO:0000027 ... P60422 35500116
    40359 7ug7:LB (2.58) BS06 MG ? GO:0000027 ... P60422 35500116
    40360 7ug7:LX (2.58) BS02 MG ? GO:0000027 ... P60624 35500116
    40361 7ugw:B (3.0) BS02 MG 5.6.2.2 GO:0003677 ... P9WG45 35996001
    40362 7uiv:C (3.38) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    40363 7uiv:D (3.38) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    40364 7uix:B (3.24) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    40365 7uix:C (3.24) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    40366 7uiy:B (3.22) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    40367 7uiz:C (3.24) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    40368 7uiz:E (3.24) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    40369 7uj0:A (3.26) BS03 MG ? GO:0004176 ... P0ABH9 36329286
    40370 7uj0:B (3.26) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    40371 7uj0:D (3.26) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    40372 7uj4:A (1.96) BS02 MG ? GO:0005634 ... O00255 36922589
    40373 7uj4:B (1.96) BS02 MG ? GO:0005634 ... O00255 36922589
    40374 7ujk:B (2.43266) BS01 MG ? N/A P05106 36113427
    40375 7ujk:D (2.43266) BS01 MG ? N/A P05106 36113427
    40376 7ujp:A (2.56) BS04 MG 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    40377 7ujp:B (2.56) BS04 MG 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    40378 7ujx:E (2.4) BS04 MG 2.7.11.11 GO:0000122 ... P05132 36601807
    40379 7uk7:A (1.95) BS02 MG 6.3.1.- GO:0005524 ... P33222 36745518
    40380 7uk7:A (1.95) BS03 MG 6.3.1.- GO:0005524 ... P33222 36745518
    40381 7umz:A (3.09) BS03 MG N/A GO:0005216 ... N/A N/A
    40382 7umz:B (3.09) BS03 MG N/A GO:0005216 ... N/A N/A
    40383 7umz:C (3.09) BS03 MG N/A GO:0005216 ... N/A N/A
    40384 7umz:D (3.09) BS04 MG N/A GO:0005216 ... N/A N/A
    40385 7un1:AC (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40386 7un1:CC (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40387 7un1:CG (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40388 7un1:DE (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40389 7un1:DG (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40390 7un1:FC (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40391 7un1:FE (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40392 7un1:GE (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40393 7un1:HE (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40394 7un1:HG (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40395 7un1:IC (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40396 7un1:IG (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40397 7un1:JC (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40398 7un1:JE (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40399 7un1:JG (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    40400 7un1:KC (6.0) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 36191189
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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