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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1dbr:B (2.4) BS01 MG 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 8836106
    202 1dbr:D (2.4) BS01 MG 2.4.2.22
    2.4.2.8    		 GO:0000166 ... Q26997 8836106
    203 1dcm:B (3.0) BS01 MG ? GO:0000160 ... P10958 10647182
    204 1dek:A (2.0) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    205 1dek:B (2.0) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    206 1del:A (2.2) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    207 1del:B (2.2) BS01 MG 2.7.4.13 GO:0005524 ... P04531 8670851
    208 1dgm:A (1.8) BS01 MG 2.7.1.20 GO:0004001 ... Q9TVW2 10794412
    209 1die:A (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    210 1die:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    211 1die:B (2.5) BS01 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    212 1die:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2304904
    213 1doa:A (2.6) BS01 MG 3.6.5.2 GO:0000139 ... P60953 10676816
    214 1dp0:A (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    215 1dp0:A (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    216 1dp0:B (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    217 1dp0:B (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    218 1dp0:C (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    219 1dp0:C (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    220 1dp0:D (1.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    221 1dp0:D (1.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    222 1dqn:A (1.75) BS01 MG 2.4.2.8 GO:0000166 ... Q24973 10841757
    223 1dqv:A (3.2) BS01 MG ? GO:0016020 ... P40748 10545502
    224 1ds5:B (3.16) BS03 MG 2.7.11.1 GO:0004672 ... P28523 10931203
    225 1ds6:A (2.35) BS01 MG ? GO:0003924 ... P15153 10655614
    226 1dtn:A (2.1) BS01 MG 5.1.2.2 GO:0000287 ... P11444 7893689
    227 1dtw:A (2.7) BS01 MG 1.2.4.4 GO:0003863 ... P12694 10745006
    228 1dxe:A (1.8) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    229 1dxe:B (1.8) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    230 1dxf:A (2.6) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    231 1dxf:B (2.6) BS02 MG 4.1.2.20 GO:0000287 ... P23522 10921867
    232 1dxi:A (2.6) BS01 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    233 1dxi:A (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    234 1dxi:B (2.6) BS01 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    235 1dxi:B (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P37031 15299450
    236 1dy3:A (2.0) BS03 MG 2.7.6.3 GO:0000287 ... P26281 10452528
    237 1dy3:A (2.0) BS04 MG 2.7.6.3 GO:0000287 ... P26281 10452528
    238 1e0a:A (-1.00) BS02 MG 3.6.5.2 GO:0000139 ... P60953 10802735
    239 1e1t:A (2.4) BS03 MG 6.1.1.6 GO:0000049 ... P0A8N5 10913247
    240 1e1z:P (2.4) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11124905
    241 1e22:A (2.43) BS03 MG 6.1.1.6 GO:0000049 ... P0A8N5 10913247
    242 1e2s:P (2.35) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11124905
    243 1e33:P (2.5) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11777924
    244 1e3c:P (2.65) BS01 MG 3.1.6.8 GO:0004065 ... P15289 11124905
    245 1e3d:B (1.8) BS03 MG ? GO:0008901 ... Q9L868 11191224
    246 1e3d:D (1.8) BS03 MG ? GO:0008901 ... Q9L868 11191224
    247 1e3m:A (2.2) BS04 MG ? GO:0000018 ... P23909 11048711
    248 1e4e:A (2.5) BS03 MG 6.1.2.1 GO:0003824 ... P25051 10908650
    249 1e4e:B (2.5) BS03 MG 6.1.2.1 GO:0003824 ... P25051 10908650
    250 1e96:A (2.4) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11090627
    251 1e9i:A (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    252 1e9i:B (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    253 1e9i:C (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    254 1e9i:D (2.48) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 11676541
    255 1ebg:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8049235
    256 1ebg:B (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8049235
    257 1ebh:A (1.9) BS01 MG 4.2.1.11 GO:0000015 ... P00924 7703246
    258 1ebh:B (1.9) BS01 MG 4.2.1.11 GO:0000015 ... P00924 7703246
    259 1ec7:A (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    260 1ec7:B (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    261 1ec7:C (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    262 1ec7:D (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    263 1ec8:A (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    264 1ec8:B (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    265 1ec8:C (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    266 1ec8:D (1.9) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    267 1ec9:A (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    268 1ec9:B (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    269 1ec9:C (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    270 1ec9:D (2.0) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    271 1ecb:A (2.7) BS01 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    272 1ecb:B (2.7) BS02 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    273 1ecb:C (2.7) BS01 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    274 1ecb:D (2.7) BS02 MG 2.4.2.14 GO:0000287 ... P0AG16 9333323
    275 1ecq:A (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    276 1ecq:B (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    277 1ecq:C (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    278 1ecq:D (2.0) BS02 MG 4.2.1.40 GO:0000287 ... P0AES2 10769114
    279 1ed8:A (1.75) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    280 1ed8:B (1.75) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    281 1ed9:A (1.75) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    282 1ed9:B (1.75) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10873454
    283 1efk:A (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    284 1efk:B (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    285 1efk:C (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    286 1efk:D (2.6) BS02 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    287 1efl:A (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    288 1efl:B (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    289 1efl:C (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    290 1efl:D (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    291 1eft:A (2.5) BS01 MG ? GO:0003746 ... Q01698 8069622
    292 1ehi:A (2.38) BS01 MG 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    293 1ek0:A (1.48) BS01 MG ? GO:0003924 ... P36017 10756108
    294 1elx:A (2.6) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    295 1elx:B (2.6) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    296 1ely:A (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    297 1ely:B (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    298 1elz:A (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    299 1elz:B (2.8) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9533886
    300 1eo3:A (2.0) BS03 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    301 1eo3:A (2.0) BS04 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    302 1eo3:B (2.0) BS03 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    303 1eo3:B (2.0) BS04 MG 3.1.21.4 GO:0003677 ... P04390 N/A
    304 1eqm:A (1.5) BS01 MG 2.7.6.3 GO:0000287 ... P26281 11546767
    305 1esn:A (2.6) BS01 MG 2.7.1.33 GO:0004594 ... P0A6I3 10862768
    306 1evw:B (3.1) BS05 MG 3.1.-.- GO:0004519 ... Q94702 10891275
    307 1evw:C (3.1) BS03 MG 3.1.-.- GO:0004519 ... Q94702 10891275
    308 1ew2:A (1.82) BS03 MG 3.1.3.1 GO:0000287 ... P05187 11124260
    309 1ew2:A (1.82) BS04 MG 3.1.3.1 GO:0000287 ... P05187 11124260
    310 1ew8:A (2.2) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    311 1ew8:B (2.2) BS04 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    312 1ew9:A (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    313 1ew9:B (2.0) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10850800
    314 1ewk:A (2.2) BS01 MG ? GO:0004930 ... P23385 11069170
    315 1ewk:B (2.2) BS01 MG ? GO:0004930 ... P23385 11069170
    316 1exm:A (1.7) BS01 MG ? GO:0003746 ... P60338 N/A
    317 1eye:A (1.7) BS01 MG 2.5.1.15 GO:0004156 ... P9WND1 11007651
    318 1eyi:A (2.32) BS02 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    319 1eyi:A (2.32) BS03 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    320 1eyj:A (2.28) BS02 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    321 1eyj:B (2.28) BS02 MG 3.1.3.11 GO:0005737 ... P00636 10913263
    322 1eyz:A (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    323 1eyz:B (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    324 1ez1:A (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    325 1ez1:B (1.75) BS01 MG 6.3.1.21 GO:0000287 ... P33221 10913290
    326 1ezw:A (1.65) BS01 MG 1.5.98.2 GO:0005737 ... Q8TXY4 10891279
    327 1f1z:A (2.4) BS01 MG 3.1.21.- GO:0003676 ... P13988 10911996
    328 1f1z:B (2.4) BS01 MG 3.1.21.- GO:0003676 ... P13988 10911996
    329 1f2u:A (1.6) BS01 MG ? GO:0006302 ... P58301 10892749
    330 1f2u:C (1.6) BS01 MG ? GO:0006302 ... P58301 10892749
    331 1f48:A (2.3) BS04 MG 7.3.2.7 GO:0005524 ... P08690 10970874
    332 1f4a:A (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    333 1f4a:A (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    334 1f4a:B (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    335 1f4a:B (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    336 1f4a:C (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    337 1f4a:C (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    338 1f4a:D (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    339 1f4a:D (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    340 1f4h:A (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    341 1f4h:A (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    342 1f4h:B (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    343 1f4h:B (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    344 1f4h:C (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    345 1f4h:C (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    346 1f4h:D (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    347 1f4h:D (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11045615
    348 1f4v:A (2.22) BS03 MG ? GO:0000156 ... P0AE67 11135671
    349 1f4v:B (2.22) BS02 MG ? GO:0000156 ... P0AE67 11135671
    350 1f4v:C (2.22) BS03 MG ? GO:0000156 ... P0AE67 11135671
    351 1f51:E (3.0) BS01 MG 2.7.-.- GO:0000160 ... P06628 10997904
    352 1f5n:A (1.7) BS01 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 10970849
    353 1f5s:A (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 11342136
    354 1f5s:B (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 11342136
    355 1f61:A (2.0) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    356 1f61:B (2.0) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    357 1f6b:A (1.7) BS01 MG 3.6.5.2 GO:0003400 ... Q9QVY3 11739406
    358 1f9h:A (1.5) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    359 1f9h:A (1.5) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    360 1fbc:A (2.6) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    361 1fbc:B (2.6) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    362 1fbf:A (2.7) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    363 1fbf:B (2.7) BS01 MG 3.1.3.11 GO:0005737 ... P00636 8382525
    364 1fbp:A (2.5) BS02 MG 3.1.3.11 GO:0005737 ... P00636 2164670
    365 1fbp:B (2.5) BS02 MG 3.1.3.11 GO:0005737 ... P00636 2164670
    366 1fez:A (3.0) BS01 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    367 1fez:B (3.0) BS02 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    368 1fez:C (3.0) BS01 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    369 1fez:D (3.0) BS02 MG 3.11.1.1 GO:0000287 ... O31156 10956028
    370 1fgs:A (2.4) BS01 MG 6.3.2.17 GO:0004326 ... P15925 9618466
    371 1fhv:A (1.77) BS01 MG 4.2.1.113 GO:0000287 ... P29208 10978150
    372 1fiu:A (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    373 1fiu:B (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    374 1fiu:C (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    375 1fiu:D (1.6) BS04 MG 3.1.21.4 GO:0004519 ... P31032 10966652
    376 1fjg:D (3.0) BS02 MG ? GO:0003723 ... P80373 11014183
    377 1fmw:A (2.15) BS01 MG ? GO:0003774 ... P08799 10954715
    378 1fnt:H (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11081519
    379 1fnt:I (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11081519
    380 1fnt:J (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11081519
    381 1fnt:L (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11081519
    382 1fnt:V (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11081519
    383 1fnt:W (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11081519
    384 1fnt:X (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11081519
    385 1fnt:Z (3.2) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11081519
    386 1fnt:a (3.2) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11081519
    387 1fq1:B (3.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 11463386
    388 1fqj:A (2.02) BS01 MG ? GO:0003924 ... P04695
    P10824    		 11234020
    389 1fqj:D (2.02) BS01 MG ? GO:0003924 ... P04695
    P10824    		 11234020
    390 1fqk:A (2.3) BS01 MG ? GO:0003924 ... P04695
    P10824    		 11234020
    391 1fqk:C (2.3) BS01 MG ? GO:0003924 ... P04695
    P10824    		 11234020
    392 1frf:L (2.7) BS02 MG 1.12.2.1 GO:0008901 ... P18188 9751716
    393 1ftn:A (2.1) BS01 MG 3.6.5.2 GO:0000902 ... P61586 9302995
    394 1fvu:B (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    395 1fvu:D (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    396 1fx4:A (1.9) BS01 MG 4.6.1.1 GO:0009190 ... Q99280 11157750
    397 1g0u:2 (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    398 1g0u:G (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    399 1g0u:G (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    400 1g0u:H (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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