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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49779 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39201 7rqe:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    39202 7rqe:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    39203 7rqe:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    39204 7rqe:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    39205 7rqe:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    39206 7rqe:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    39207 7rqe:1F (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    39208 7rqe:1F (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    39209 7rqe:1F (2.4) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    39210 7rqe:1G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    39211 7rqe:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    39212 7rqe:1N (2.4) BS02 MG ? GO:0003729 ... P60488 35165455
    39213 7rqe:1N (2.4) BS03 MG ? GO:0003729 ... P60488 35165455
    39214 7rqe:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    39215 7rqe:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    39216 7rqe:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    39217 7rqe:1Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    39218 7rqe:1Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    39219 7rqe:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 35165455
    39220 7rqe:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 35165455
    39221 7rqe:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    39222 7rqe:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    39223 7rqe:1R (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 35165455
    39224 7rqe:1R (2.4) BS05 MG ? GO:0003735 ... Q9Z9H5 35165455
    39225 7rqe:1U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    39226 7rqe:1U (2.4) BS03 MG ? GO:0000027 ... P60491 35165455
    39227 7rqe:1U (2.4) BS04 MG ? GO:0000027 ... P60491 35165455
    39228 7rqe:1U (2.4) BS05 MG ? GO:0000027 ... P60491 35165455
    39229 7rqe:1U (2.4) BS06 MG ? GO:0000027 ... P60491 35165455
    39230 7rqe:1V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    39231 7rqe:1V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    39232 7rqe:1V (2.4) BS04 MG ? GO:0003723 ... P60492 35165455
    39233 7rqe:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    39234 7rqe:1W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    39235 7rqe:1d (2.4) BS02 MG ? GO:0003723 ... P80373 35165455
    39236 7rqe:1d (2.4) BS03 MG ? GO:0003723 ... P80373 35165455
    39237 7rqe:1k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    39238 7rqe:1l (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    39239 7rqe:1m (2.4) BS03 MG ? GO:0000049 ... P80377 35165455
    39240 7rqe:1n (2.4) BS02 MG ? GO:0003735 ... P0DOY6 35165455
    39241 7rqe:1t (2.4) BS02 MG ? GO:0003723 ... P80380 35165455
    39242 7rqe:1y (2.4) BS02 MG ? GO:0005515 ... P0AD49 35165455
    39243 7rqe:20 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    39244 7rqe:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    39245 7rqe:25 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    39246 7rqe:25 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    39247 7rqe:26 (2.4) BS02 MG ? GO:0000049 ... P35871 35165455
    39248 7rqe:27 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    39249 7rqe:2D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    39250 7rqe:2D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    39251 7rqe:2D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    39252 7rqe:2D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    39253 7rqe:2D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    39254 7rqe:2D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    39255 7rqe:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    39256 7rqe:2E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    39257 7rqe:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    39258 7rqe:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    39259 7rqe:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    39260 7rqe:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    39261 7rqe:2Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    39262 7rqe:2Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    39263 7rqe:2R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    39264 7rqe:2U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    39265 7rqe:2V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    39266 7rqe:2V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    39267 7rqe:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    39268 7rqe:2W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    39269 7rqe:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    39270 7rqe:2k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    39271 7rqe:2l (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    39272 7rqe:2t (2.4) BS02 MG ? GO:0003723 ... P80380 35165455
    39273 7rqs:A (3.57) BS01 MG 2.7.7.48 GO:0003723 ... O82504 34903670
    39274 7rr4:A (1.86) BS01 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 N/A
    39275 7rr4:A (1.86) BS02 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 N/A
    39276 7rr5:LA (3.23) BS03 MG N/A GO:0003735 ... N/A 34706231
    39277 7rr5:Le (3.23) BS02 MG ? GO:0003735 ... N/A 34706231
    39278 7rro:CC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39279 7rro:CI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39280 7rro:CK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39281 7rro:DA (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39282 7rro:DC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39283 7rro:DE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39284 7rro:DI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39285 7rro:DK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39286 7rro:DM (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39287 7rro:EC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39288 7rro:EE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39289 7rro:EI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39290 7rro:FC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39291 7rro:FE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39292 7rro:FK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39293 7rro:FM (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39294 7rro:GM (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39295 7rro:HE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39296 7rro:II (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39297 7rro:IK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39298 7rro:JG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39299 7rro:JI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39300 7rro:JK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39301 7rro:JM (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39302 7rro:LE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39303 7rro:LI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39304 7rro:MC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39305 7rro:ME (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39306 7rro:MG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39307 7rro:MI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39308 7rro:OC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39309 7rro:OG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39310 7rro:PA (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39311 7rro:PI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39312 7rro:QA (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39313 7rro:QE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39314 7rro:QG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39315 7rro:QI (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39316 7rro:QK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39317 7rro:RA (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39318 7rro:RC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39319 7rro:RK (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39320 7rro:RM (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39321 7rro:SA (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39322 7rro:SE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39323 7rro:SG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39324 7rro:SM (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39325 7rro:TC (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39326 7rro:TG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39327 7rro:VE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39328 7rro:WE (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39329 7rro:WG (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2HJ86 34715025
    39330 7rs5:K (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39331 7rs5:a (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39332 7rs5:b (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39333 7rs5:c (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39334 7rs5:d (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39335 7rs5:e (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39336 7rs5:f (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39337 7rs5:g (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39338 7rs5:h (3.9) BS02 MG N/A GO:0003777 ... N/A N/A
    39339 7rs6:K (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39340 7rs6:a (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39341 7rs6:b (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39342 7rs6:c (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39343 7rs6:d (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39344 7rs6:e (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39345 7rs6:f (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39346 7rs6:g (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39347 7rs6:h (4.1) BS02 MG N/A GO:0003777 ... N/A N/A
    39348 7rsc:A (-1.00) BS02 MG 3.6.5.2 GO:0000139 ... P01116 34703570
    39349 7rsc:B (-1.00) BS04 MG 3.6.5.2 GO:0000139 ... P01116 34703570
    39350 7rse:A (-1.00) BS02 MG 3.6.5.2 GO:0000139 ... P01116 34703570
    39351 7ru9:A (3.3) BS02 MG 3.6.-.- GO:0005524 ... Q6IQE5 34887561
    39352 7ru9:B (3.3) BS03 MG 3.6.-.- GO:0005524 ... Q6IQE5 34887561
    39353 7rua:A (3.4) BS02 MG 3.6.-.- GO:0005524 ... Q6IQE5 34887561
    39354 7rua:B (3.4) BS03 MG 3.6.-.- GO:0005524 ... Q6IQE5 34887561
    39355 7ruc:B (3.6) BS03 MG 3.6.-.- GO:0005524 ... Q6IQE5 34887561
    39356 7rva:C (1.89) BS05 MG ? GO:0003677 ... P03856 N/A
    39357 7rwh:A (1.17) BS03 MG 2.5.1.6 GO:0004478 ... P31153 35293760
    39358 7rwk:A (2.39) BS02 MG ? GO:0046872 ... V4NUN3 34737303
    39359 7rwk:B (2.39) BS02 MG ? GO:0046872 ... V4NUN3 34737303
    39360 7rxf:A (1.16) BS01 MG 5.3.3.1 GO:0004769 ... P07445 36240280
    39361 7rzk:A (1.9) BS02 MG ? GO:0004371 ... Q2FZ58 N/A
    39362 7rzk:A (1.9) BS03 MG ? GO:0004371 ... Q2FZ58 N/A
    39363 7s04:A (2.52) BS02 MG 1.1.1.267 GO:0008299 ... B7H1U5 34672535
    39364 7s0s:D (3.05) BS02 MG ? GO:0002181 ... A0QSD4 35357969
    39365 7s0s:D (3.05) BS03 MG ? GO:0002181 ... A0QSD4 35357969
    39366 7s0s:D (3.05) BS04 MG ? GO:0002181 ... A0QSD4 35357969
    39367 7s0s:O (3.05) BS02 MG ? GO:0000049 ... A0QSD8 35357969
    39368 7s0z:A (2.34) BS03 MG 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 34678063
    39369 7s1g:K (2.48) BS03 MG ? GO:0000027 ... P60422 35165456
    39370 7s1h:K (2.35) BS02 MG ? GO:0000027 ... P60422 35165456
    39371 7s1i:K (2.48) BS03 MG ? GO:0000027 ... P60422 35165456
    39372 7s1j:v (2.47) BS02 MG ? GO:0000028 ... P0AG59 35165456
    39373 7s1k:v (2.42) BS02 MG ? GO:0000028 ... P0AG59 35165456
    39374 7s4x:A (2.76) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 35236982
    39375 7s4x:A (2.76) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 35236982
    39376 7s5v:E (3.3) BS02 MG ? GO:0001508 ... Q09428 34815345
    39377 7s5x:E (3.7) BS02 MG ? GO:0001508 ... Q09428 34815345
    39378 7s5x:E (3.7) BS03 MG ? GO:0001508 ... Q09428 34815345
    39379 7s5y:E (3.9) BS02 MG ? GO:0001508 ... Q09428 34815345
    39380 7s5z:E (3.9) BS02 MG ? GO:0001508 ... Q09428 34815345
    39381 7s60:E (3.7) BS02 MG ? GO:0001508 ... Q09428 34815345
    39382 7s61:E (4.0) BS02 MG ? GO:0001508 ... Q09428 34815345
    39383 7s61:E (4.0) BS03 MG ? GO:0001508 ... Q09428 34815345
    39384 7s65:B (3.2) BS02 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35864165
    39385 7s65:E (3.2) BS02 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 35864165
    39386 7s8w:A (2.9) BS02 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 34845903
    39387 7s8w:B (2.9) BS02 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 34845903
    39388 7s8w:C (2.9) BS02 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 34845903
    39389 7s8w:D (2.9) BS02 MG 4.2.1.113
    5.1.1.-    		 GO:0003824 ... Q44244 34845903
    39390 7s9h:A (1.45) BS02 MG 3.6.4.10 GO:0005524 ... P07900 35648650
    39391 7s9q:A (1.9) BS09 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35499923
    39392 7sa4:U (2.55) BS02 MG ? GO:0000027 ... P60624 35858322
    39393 7sa4:i (2.55) BS02 MG ? GO:0000028 ... P0A7V8 35858322
    39394 7sa4:r (2.55) BS03 MG ? GO:0000049 ... P0A7S9 35858322
    39395 7scw:A (1.98) BS01 MG 3.6.5.2 GO:0000139 ... P01116 35257782
    39396 7scx:A (1.96) BS01 MG 3.6.5.2 GO:0000139 ... P01116 35257782
    39397 7sd0:B (2.95) BS01 MG 3.6.5.2 GO:0003924 ... O14807 35768504
    39398 7sdp:C (3.01) BS05 MG ? GO:0003677 ... P03856 37407546
    39399 7sf0:A (1.95) BS02 MG 3.1.3.- GO:0016787 ... P04311 35290794
    39400 7sf2:A (2.75) BS01 MG ? GO:0004553 ... E2NBY7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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